Drug1 | Resistance | Supporting Mutations (frequency) |
Isoniazid | ||
Rifampicin | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Ethionamide | ||
Fluoroquinolones | ||
Amikacin | ||
Capreomycin | ||
Kanamycin |
Lineage2 | Family | Main Spoligotype | RDS |
lineage2 | East-Asian | Beijing | RD105 |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None |
lineage3.1.2.2 | East-African-Indian | CAS | RD750 |
Gene | Chromosome Position | Mutation | Estimated fraction |
gyrA | 7362 | p.Glu21Gln | 1.000 |
gyrA | 7391 | c.90C>T | 1.000 |
gyrA | 7394 | c.93T>C | 1.000 |
gyrA | 7397 | c.96G>C | 1.000 |
gyrA | 7406 | c.105G>C | 1.000 |
gyrA | 7412 | c.111C>G | 1.000 |
gyrA | 7418 | c.117C>T | 1.000 |
gyrA | 7433 | c.132G>A | 1.000 |
gyrA | 7442 | c.141G>C | 1.000 |
gyrA | 7457 | c.156T>C | 1.000 |
gyrA | 7463 | c.162G>C | 1.000 |
gyrA | 7472 | c.171T>C | 1.000 |
gyrA | 7475 | c.174A>G | 1.000 |
gyrA | 7480 | p.Phe60Tyr | 1.000 |
gyrA | 7484 | c.183T>C | 1.000 |
gyrA | 7499 | c.198G>C | 1.000 |
gyrA | 7526 | c.225G>C | 1.000 |
gyrA | 7532 | c.231T>G | 1.000 |
gyrA | 7541 | c.240C>G | 1.000 |
gyrA | 7547 | c.246C>T | 1.000 |
gyrA | 7565 | c.264C>T | 1.000 |
gyrA | 7569 | p.Ala90Ser | 1.000 |
gyrA | 7585 | p.Ser95Thr | 1.000 |
gyrA | 8294 | c.993T>C | 1.000 |
gyrA | 8324 | c.1023T>C | 1.000 |
gyrA | 8327 | c.1026C>G | 1.000 |
gyrA | 8339 | c.1038A>G | 1.000 |
gyrA | 8340 | p.Ala347Ser | 1.000 |
gyrA | 8354 | c.1053G>C | 1.000 |
gyrA | 8366 | c.1065G>C | 1.000 |
gyrA | 8372 | c.1071G>T | 1.000 |
rpoB | 760181 | c.375T>C | 1.000 |
rpoB | 760184 | c.378A>G | 1.000 |
rpoB | 760196 | c.390C>G | 1.000 |
rpoB | 760235 | c.429T>C | 1.000 |
rpoB | 760244 | c.438G>C | 1.000 |
rpoB | 760283 | c.477G>C | 1.000 |
rpoB | 760298 | c.492G>C | 1.000 |
rpoB | 760430 | c.624T>C | 1.000 |
rpoB | 760433 | c.627C>T | 1.000 |
rpoB | 760457 | c.651C>T | 1.000 |
rpoB | 760463 | c.657C>T | 1.000 |
rpoB | 761213 | c.1407G>C | 1.000 |
rpoB | 761249 | c.1443A>G | 1.000 |
rpoB | 761261 | c.1455G>T | 1.000 |
rpoB | 761264 | c.1458C>G | 1.000 |
rpoB | 761282 | c.1476C>T | 1.000 |
rpoB | 761288 | c.1482G>T | 1.000 |
rpoB | 761318 | c.1512G>T | 1.000 |
rpoB | 761327 | c.1521A>G | 1.000 |
rpoB | 761330 | c.1524G>C | 1.000 |
rpoB | 761552 | c.1746G>C | 1.000 |
rpoB | 761555 | c.1749G>C | 1.000 |
rpoB | 761558 | c.1752C>G | 1.000 |
rpoB | 761570 | c.1764T>C | 1.000 |
rpoB | 761573 | c.1767C>G | 1.000 |
rpoB | 761579 | c.1773G>C | 1.000 |
rpoB | 761606 | c.1800C>G | 1.000 |
rpoB | 761612 | c.1806G>T | 1.000 |
rpoB | 761615 | c.1809A>C | 1.000 |
rpoB | 761636 | c.1830G>T | 1.000 |
rpoB | 761969 | c.2163G>A | 1.000 |
rpoB | 762008 | c.2202C>T | 1.000 |
rpoB | 762014 | c.2208C>T | 1.000 |
rpoB | 762047 | c.2241G>A | 1.000 |
rpoB | 762053 | c.2247T>C | 1.000 |
rpoB | 762065 | c.2259T>C | 1.000 |
rpoB | 762083 | c.2277T>C | 1.000 |
rpoB | 762086 | c.2280G>C | 1.000 |
rpoB | 762101 | c.2295C>G | 1.000 |
rpoB | 762114 | p.Ile770Val | 1.000 |
rpoB | 762158 | c.2352G>C | 1.000 |
rpoB | 762185 | c.2379G>C | 1.000 |
rpoB | 762224 | c.2418C>G | 1.000 |
rpoB | 762233 | c.2427G>C | 1.000 |
rpoB | 762245 | c.2439G>C | 1.000 |
rpoB | 762833 | c.3027C>T | 1.000 |
rpoB | 762839 | c.3033G>A | 1.000 |
rpoB | 762857 | c.3051C>G | 1.000 |
rpoB | 762863 | c.3057T>C | 1.000 |
rpoB | 762879 | p.Met1025Leu | 1.000 |
rpoB | 762917 | c.3111C>G | 1.000 |
rpoB | 762920 | c.3114C>T | 1.000 |
rpoB | 762929 | c.3123G>C | 1.000 |
rpoB | 762959 | c.3153G>C | 1.000 |
rpoB | 762962 | c.3156C>T | 1.000 |
rpoB | 762995 | c.3189G>T | 0.917 |
rpoB | 763004 | c.3198G>A | 1.000 |
rpoB | 763007 | c.3201C>T | 1.000 |
rpoB | 763022 | c.3216C>G | 1.000 |
rpoB | 763028 | c.3222T>C | 1.000 |
rpoB | 763031 | c.3225T>G | 1.000 |
rpoB | 763053 | c.3247T>C | 1.000 |
rpoB | 763070 | c.3264T>C | 1.000 |
rpoB | 763085 | c.3279C>G | 1.000 |
rpoB | 763103 | c.3297G>C | 1.000 |
rpoB | 763115 | c.3309T>C | 1.000 |
rpoB | 763127 | c.3321G>C | 1.000 |
rpoB | 763130 | c.3324G>A | 1.000 |
rpoB | 763133 | c.3327G>C | 1.000 |
rpoB | 763136 | c.3330C>T | 1.000 |
rpoB | 763142 | c.3336C>G | 1.000 |
rpoB | 763160 | c.3354G>T | 1.000 |
rpoC | 763456 | c.87A>G | 1.000 |
rpoC | 763468 | c.99G>C | 1.000 |
rpoC | 763486 | c.117T>C | 1.000 |
rpoC | 763492 | c.123G>T | 1.000 |
rpoC | 763528 | c.159G>A | 1.000 |
rpoC | 763546 | c.177A>G | 1.000 |
rpoC | 763558 | c.189C>T | 1.000 |
rpoC | 763570 | c.201G>C | 1.000 |
rpoC | 763573 | c.204G>C | 1.000 |
rpoC | 763594 | c.225C>T | 1.000 |
rpoC | 763603 | c.234C>T | 1.000 |
rpoC | 763615 | c.246G>C | 1.000 |
rpoC | 763618 | c.249C>T | 1.000 |
rpoC | 763633 | c.264T>C | 1.000 |
rpoC | 763660 | c.291T>G | 1.000 |
rpoC | 763666 | c.297G>A | 1.000 |
rpoC | 763675 | c.306C>G | 1.000 |
rpoC | 763765 | c.396T>G | 1.000 |
rpoC | 763792 | p.Glu141Asp | 1.000 |
rpoC | 763807 | c.438T>C | 1.000 |
rpoC | 763813 | c.444C>G | 1.000 |
rpoC | 764500 | c.1131C>G | 1.000 |
rpoC | 764521 | c.1152T>C | 1.000 |
rpoC | 764536 | c.1167G>T | 1.000 |
rpoC | 764539 | c.1170C>G | 1.000 |
rpoC | 764575 | c.1206T>G | 1.000 |
rpoC | 764605 | c.1236G>C | 1.000 |
rpoC | 764611 | c.1242G>T | 1.000 |
rpoC | 764623 | c.1254C>G | 1.000 |
rpoC | 764626 | c.1257C>T | 1.000 |
rpoC | 764632 | c.1263T>C | 1.000 |
rpoC | 764650 | c.1281G>T | 1.000 |
rpoC | 764701 | c.1332C>G | 1.000 |
rpoC | 764713 | c.1344G>T | 1.000 |
rpoC | 764716 | c.1347G>C | 1.000 |
rpoC | 764746 | c.1377G>T | 1.000 |
rpoC | 764752 | c.1383G>C | 1.000 |
rpoC | 764758 | c.1389C>G | 1.000 |
rpoC | 764764 | c.1395T>C | 1.000 |
rpoC | 764803 | c.1434C>T | 1.000 |
rpoC | 764809 | c.1440C>T | 1.000 |
rpoC | 764815 | c.1446A>G | 1.000 |
rpoC | 764824 | c.1455T>C | 1.000 |
rpoC | 764827 | c.1458G>C | 1.000 |
rpoC | 764851 | c.1482C>T | 1.000 |
rpoC | 764858 | c.1489T>C | 1.000 |
rpoC | 764869 | c.1500C>T | 1.000 |
rpoC | 764875 | c.1506C>T | 1.000 |
rpoC | 764878 | c.1509C>G | 1.000 |
rpoC | 764887 | c.1518G>C | 1.000 |
rpoC | 764888 | c.1519T>C | 1.000 |
rpoC | 764911 | c.1542A>G | 1.000 |
rpoC | 764912 | p.Met515Gln | 1.000 |
rpoC | 764932 | c.1563C>A | 0.938 |
rpoC | 764935 | c.1566T>C | 1.000 |
rpoC | 764948 | c.1579T>C | 1.000 |
rpoC | 764968 | c.1599T>C | 1.000 |
rpoC | 765466 | c.2097C>T | 1.000 |
rpoC | 765478 | c.2109T>C | 1.000 |
rpoC | 765480 | p.Tyr704Phe | 1.000 |
rpoC | 765496 | c.2127C>G | 1.000 |
rpoC | 765811 | c.2442T>G | 1.000 |
rpoC | 765814 | c.2445A>C | 1.000 |
rpoC | 765817 | c.2448G>C | 1.000 |
rpoC | 765823 | c.2454C>A | 1.000 |
rpoC | 765826 | c.2457T>C | 1.000 |
rpoC | 765835 | c.2466C>T | 1.000 |
rpoC | 765871 | c.2502T>C | 1.000 |
rpoC | 765875 | p.Val836Ile | 1.000 |
rpoC | 765886 | c.2517C>G | 1.000 |
rpoC | 765904 | c.2535C>G | 1.000 |
rpoC | 765908 | c.2539C>T | 1.000 |
rpsL | 781628 | c.69T>C | 1.000 |
rpsL | 781631 | c.72G>C | 1.000 |
rpsL | 781649 | c.90T>C | 1.000 |
rpsL | 781655 | c.96T>C | 1.000 |
rpsL | 781658 | c.99A>G | 1.000 |
rpsL | 781682 | c.123T>C | 1.000 |
rpsL | 781709 | c.150G>C | 1.000 |
rpsL | 781715 | c.156T>C | 1.000 |
rpsL | 781760 | c.201T>C | 1.000 |
rpsL | 781772 | c.213C>T | 1.000 |
rpsL | 781808 | c.249C>T | 1.000 |
rpsL | 781814 | c.255C>T | 1.000 |
rpsL | 781817 | c.258G>T | 1.000 |
rpsL | 781829 | c.270G>C | 1.000 |
rpsL | 781832 | c.273T>C | 1.000 |
rpsL | 781838 | c.279G>C | 1.000 |
rpsL | 781841 | c.282C>T | 1.000 |
rpsL | 781859 | c.300T>G | 1.000 |
rpsL | 781865 | c.306G>C | 1.000 |
rpsL | 781868 | c.309T>C | 1.000 |
rpsL | 781871 | c.312G>C | 1.000 |
rpsL | 781892 | c.333A>G | 1.000 |
rpsL | 781898 | c.339A>C | 1.000 |
rpsL | 781901 | c.342C>T | 1.000 |
rpsL | 781907 | c.348T>C | 1.000 |
rpsL | 781916 | c.357T>C | 1.000 |
rpsL | 781929 | p.Gly124Ser | 1.000 |
rrs | 1471922 | r.77gt>g | 1.000 |
rrs | 1471925 | r.80t>c | 1.000 |
rrs | 1471931 | r.86ga>g | 1.000 |
rrs | 1471933 | r.88ga>g | 1.000 |
rrs | 1471934 | r.89a>g | 1.000 |
rrs | 1471986 | r.141c>t | 1.000 |
rrs | 1472019 | r.174g>a | 1.000 |
rrs | 1472023 | r.178g>t | 1.000 |
rrs | 1472031 | r.186g>c | 1.000 |
rrs | 1472053 | r.208agc>a | 1.000 |
rrs | 1472061 | r.216a>t | 1.000 |
rrs | 1472075 | r.230a>g | 1.000 |
rrs | 1472106 | r.261g>a | 1.000 |
rrs | 1472108 | r.263c>t | 1.000 |
rrs | 1472150 | r.305t>a | 1.000 |
rrs | 1472251 | r.406g>a | 1.000 |
rrs | 1472337 | r.492c>g | 1.000 |
rrs | 1472380 | r.535g>c | 1.000 |
rrs | 1472446 | r.601t>a | 0.950 |
rrs | 1472452 | r.607g>a | 0.974 |
rrs | 1472464 | r.619a>g | 1.000 |
rrs | 1472846 | r.1001c>a | 1.000 |
rrs | 1472847 | r.1002g>c | 0.941 |
rrs | 1472849 | r.1004c>g | 1.000 |
rrs | 1472850 | r.1005t>c | 1.000 |
rrs | 1472857 | r.1012a>g | 1.000 |
rrs | 1472858 | r.1013g>t | 1.000 |
rrs | 1472860 | r.1015c>g | 1.000 |
rrs | 1472861 | r.1016g>t | 1.000 |
rrs | 1472973 | r.1128a>t | 1.000 |
rrs | 1473104 | r.1259c>t | 0.972 |
rrs | 1473110 | r.1265t>g | 1.000 |
rrs | 1473111 | r.1266a>g | 1.000 |
rrs | 1473120 | r.1275c>ct | 0.865 |
rrs | 1473123 | r.1278a>c | 1.000 |
rrs | 1473276 | r.1431a>g | 1.000 |
rrs | 1473290 | r.1445c>t | 1.000 |
rrs | 1473291 | r.1446g>gt | 1.000 |
rrs | 1473301 | r.1456t>c | 1.000 |
rrl | 1473668 | r.11c>t | 1.000 |
rrl | 1473696 | r.39t>c | 1.000 |
rrl | 1473697 | r.40c>t | 1.000 |
rrl | 1473699 | r.42a>g | 1.000 |
rrl | 1473717 | r.60g>t | 0.963 |
rrl | 1473746 | r.89t>c | 1.000 |
rrl | 1473758 | r.101g>t | 1.000 |
rrl | 1473770 | r.113t>g | 1.000 |
rrl | 1473788 | r.131a>g | 1.000 |
rrl | 1473876 | r.219g>a | 1.000 |
rrl | 1473887 | r.230t>a | 1.000 |
rrl | 1473898 | r.241c>t | 1.000 |
rrl | 1473899 | r.242a>g | 1.000 |
rrl | 1473916 | r.259c>a | 1.000 |
rrl | 1474135 | r.478g>a | 0.957 |
rrl | 1474140 | r.483c>t | 0.957 |
rrl | 1474151 | r.494c>t | 0.960 |
rrl | 1474174 | r.517a>g | 0.962 |
rrl | 1474181 | r.524c>t | 1.000 |
rrl | 1474183 | r.526t>c | 1.000 |
rrl | 1474185 | r.528g>a | 1.000 |
rrl | 1474186 | r.529a>g | 1.000 |
rrl | 1474249 | r.592g>t | 1.000 |
rrl | 1474266 | r.609t>c | 1.000 |
rrl | 1474269 | r.612c>t | 1.000 |
rrl | 1474310 | r.653t>g | 1.000 |
rrl | 1474362 | r.705a>g | 1.000 |
rrl | 1474446 | r.789c>t | 1.000 |
rrl | 1474673 | r.1016t>c | 1.000 |
rrl | 1474676 | r.1019t>a | 1.000 |
rrl | 1474677 | r.1020a>g | 1.000 |
rrl | 1474720 | r.1063c>t | 1.000 |
rrl | 1474753 | r.1096a>g | 1.000 |
rrl | 1474760 | r.1103a>g | 1.000 |
rrl | 1474794 | r.1137c>t | 1.000 |
rrl | 1474803 | r.1146g>a | 1.000 |
rrl | 1474812 | r.1155g>a | 1.000 |
rrl | 1474830 | r.1173a>g | 1.000 |
rrl | 1474932 | r.1275c>t | 1.000 |
rrl | 1475031 | r.1374g>t | 1.000 |
rrl | 1475061 | r.1404c>a | 1.000 |
rrl | 1475062 | r.1405a>t | 1.000 |
rrl | 1475120 | r.1463g>t | 1.000 |
rrl | 1475315 | r.1658a>t | 1.000 |
rrl | 1475353 | r.1696a>t | 1.000 |
rrl | 1475354 | r.1697a>g | 1.000 |
rrl | 1475355 | r.1698c>t | 1.000 |
rrl | 1475363 | r.1706c>t | 1.000 |
rrl | 1475369 | r.1712g>t | 1.000 |
rrl | 1475419 | r.1762c>t | 1.000 |
rrl | 1475429 | r.1772g>t | 1.000 |
rrl | 1475452 | r.1795c>a | 1.000 |
rrl | 1475479 | r.1822c>g | 1.000 |
rrl | 1475483 | r.1826c>t | 1.000 |
rrl | 1475505 | r.1848g>a | 1.000 |
rrl | 1475526 | r.1869c>a | 1.000 |
rrl | 1475531 | r.1874c>t | 1.000 |
rrl | 1475544 | r.1887a>t | 1.000 |
rrl | 1475545 | r.1888t>g | 1.000 |
rrl | 1475659 | r.2002g>a | 1.000 |
rrl | 1475753 | r.2096c>t | 1.000 |
rrl | 1475762 | r.2105g>t | 1.000 |
rrl | 1475763 | r.2106c>t | 1.000 |
rrl | 1475764 | r.2107a>c | 1.000 |
rrl | 1475765 | r.2108a>g | 1.000 |
rrl | 1475775 | r.2118g>a | 1.000 |
rrl | 1475988 | r.2331a>g | 1.000 |
rrl | 1475991 | r.2334t>c | 1.000 |
rrl | 1475995 | r.2338g>a | 1.000 |
rrl | 1476088 | r.2431a>c | 0.947 |
rrl | 1476099 | r.2442a>g | 0.933 |
rrl | 1476103 | r.2446c>g | 0.933 |
rrl | 1476105 | r.2448g>a | 0.933 |
rrl | 1476106 | r.2449a>t | 0.933 |
rrl | 1476110 | r.2453g>c | 0.933 |
rrl | 1476115 | r.2458t>c | 0.941 |
rrl | 1476131 | r.2474c>t | 0.964 |
rrl | 1476160 | r.2503t>c | 1.000 |
rrl | 1476214 | r.2557g>t | 1.000 |
rrl | 1476215 | r.2558c>t | 1.000 |
rrl | 1476224 | r.2567a>g | 1.000 |
rrl | 1476251 | r.2594t>g | 0.971 |
rrl | 1476256 | r.2599a>t | 1.000 |
rrl | 1476260 | r.2603a>g | 1.000 |
rrl | 1476281 | r.2624t>c | 1.000 |
rrl | 1476297 | r.2640c>t | 1.000 |
rrl | 1476299 | r.2642c>t | 1.000 |
rrl | 1476529 | r.2872a>g | 1.000 |
rrl | 1476540 | r.2883c>t | 1.000 |
rrl | 1476583 | r.2926g>a | 1.000 |
rrl | 1476584 | r.2927c>t | 1.000 |
rrl | 1476594 | r.2937c>t | 1.000 |
rrl | 1476597 | r.2940g>a | 1.000 |
rrl | 1476603 | r.2946g>a | 1.000 |
rrl | 1476628 | r.2971t>a | 1.000 |
rrl | 1476664 | r.3007t>c | 1.000 |
rrl | 1476665 | r.3008t>c | 1.000 |
rrl | 1476674 | r.3017t>c | 1.000 |
rrl | 1476679 | r.3022t>c | 1.000 |
rrl | 1476689 | r.3032a>t | 1.000 |
rrl | 1476690 | r.3033c>t | 1.000 |
rrl | 1476693 | r.3036g>a | 1.000 |
rrl | 1476695 | r.3038t>a | 1.000 |
rpsA | 1833616 | c.75A>C | 1.000 |
rpsA | 1833619 | c.78A>C | 1.000 |
rpsA | 1833628 | c.87G>C | 1.000 |
rpsA | 1833634 | c.93G>A | 1.000 |
rpsA | 1833894 | p.Ala118Glu | 1.000 |
rpsA | 1833904 | c.363G>A | 1.000 |
rpsA | 1833928 | c.387G>C | 1.000 |
rpsA | 1833949 | c.408T>C | 1.000 |
rpsA | 1833970 | c.429G>T | 1.000 |
rpsA | 1833976 | c.435C>T | 1.000 |
rpsA | 1833979 | c.438T>C | 1.000 |
rpsA | 1833991 | c.450C>A | 1.000 |
rpsA | 1834000 | c.459G>C | 1.000 |
rpsA | 1834009 | c.468C>T | 1.000 |
rpsA | 1834012 | c.471G>T | 1.000 |
rpsA | 1834015 | c.474G>C | 1.000 |
rpsA | 1834021 | c.480C>T | 1.000 |
rpsA | 1834030 | c.489C>G | 1.000 |
rpsA | 1834078 | c.537C>T | 1.000 |
rpsA | 1834097 | c.556T>A | 1.000 |
rpsA | 1834102 | c.561T>C | 1.000 |
rpsA | 1834177 | c.636A>C | 1.000 |
rpsA | 1834189 | c.648G>C | 1.000 |
rpsA | 1834213 | c.672G>C | 1.000 |
rpsA | 1834234 | c.693G>C | 1.000 |
rpsA | 1834240 | c.699T>C | 1.000 |
rpsA | 1834246 | c.705G>C | 1.000 |
rpsA | 1834249 | c.708T>C | 1.000 |
rpsA | 1834252 | c.711C>G | 1.000 |
rpsA | 1834261 | c.720A>G | 1.000 |
rpsA | 1834264 | c.723G>C | 1.000 |
rpsA | 1834279 | c.738C>T | 1.000 |
rpsA | 1834297 | c.756C>T | 1.000 |
rpsA | 1834303 | c.762T>G | 1.000 |
rpsA | 1834366 | c.825A>G | 1.000 |
rpsA | 1834411 | c.870T>C | 1.000 |
rpsA | 1834423 | c.882G>T | 1.000 |
rpsA | 1834451 | c.910T>C | 1.000 |
rpsA | 1834456 | c.915T>G | 1.000 |
rpsA | 1834606 | c.1065C>T | 1.000 |
rpsA | 1834609 | c.1068T>C | 1.000 |
rpsA | 1834619 | c.1078T>C | 1.000 |
rpsA | 1834622 | c.1081T>A | 1.000 |
rpsA | 1834633 | c.1092A>G | 1.000 |
rpsA | 1834639 | c.1098T>C | 1.000 |
rpsA | 1834666 | c.1125G>C | 1.000 |
rpsA | 1834667 | p.Ala376Ser | 1.000 |
rpsA | 1834690 | c.1149T>C | 1.000 |
rpsA | 1834732 | c.1191T>C | 1.000 |
rpsA | 1834738 | c.1197A>G | 1.000 |
rpsA | 1834753 | c.1212T>C | 1.000 |
rpsA | 1834756 | c.1215G>A | 1.000 |
rpsA | 1834759 | c.1218A>C | 1.000 |
rpsA | 1834765 | p.Glu408Asp | 1.000 |
rpsA | 1834774 | c.1233C>G | 1.000 |
rpsA | 1834776 | p.Ala412Glu | 1.000 |
rpsA | 1834780 | c.1239A>G | 1.000 |
rpsA | 1834786 | c.1245A>G | 1.000 |
rpsA | 1834789 | c.1248T>C | 1.000 |
rpsA | 1834792 | c.1251G>C | 1.000 |
embC | 4240717 | c.855T>C | 1.000 |
embC | 4240768 | c.906G>A | 1.000 |
embC | 4240780 | c.918T>C | 1.000 |
embC | 4240783 | c.921G>C | 1.000 |
embC | 4240786 | c.924C>T | 1.000 |
embC | 4240789 | c.927T>C | 1.000 |
embC | 4240819 | c.957A>C | 1.000 |
embC | 4240828 | c.966G>A | 1.000 |
embC | 4240831 | c.969T>G | 1.000 |
TBProfiler Version: 2.1.1
Analysis | Program |
Mapping | bwa |
Variant Calling | BCFtools |
Drug1 | Sensitivity (%) | Specificity (%) |
Isoniazid | 92.8 (89.9-95.7) | 100 (100-100) |
Rifampicin | 96.2 (93.9-98.5) | 98.1 (96.8-99.4) |
Ethambutal | 88.7 (83.6-93.8) | 81.7 (77.6-85.8) |
Pyrazinamide | 70.9 (62.4-79.4) | 93.9 (90.6-97.2) |
Streptomycin | 87.1 (82.7-91.5) | 89.7 (86.0-93.4) |
Ethionamide | 73.6 (66.7-80.5) | 93.3 (89.6-97.0) |
Moxifloxacin | 60.0 (29.6-90.4) | 68.7 (52.6-84.8) |
Ofloxacin | 85.5 (79.1-91.9) | 94.9 (91.8-98.0) |
Amikacin | 82.9 (74.4-91.4) | 98.3 (96.0-100) |
Capreomycin | 60.7 (50.6-70.8) | 90.7 (87.2-94.2) |
Kanamycin | 87.3 (81.3-93.3) | 93.4 (89.9-96.9) |
Para-aminosalisylic acid | Not determined | Not determined |
Linezolid | Not determined | Not determined |
Clofazimine | Not determined | Not determined |
Bedaquiline | Not determined | Not determined |
Multi drug resistance | 91.2 (87.8-94.6) | 98.4 (97.2-99.6) |
Extremely drug resistance | 75.9 (64.5-87.3) | 98.4 (97.3-99.5) |
Lineage2 | Location | Strain | RD type |
lineage1 | Indo-Oceanic | EAI | RD239 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 |
lineage1.1.1 | Indo-Oceanic | EAI4;EAI5 | RD239 |
lineage1.1.1.1 | Indo-Oceanic | EAI4;ZERO | RD239 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 |
lineage1.1.3 | Indo-Oceanic | EAI6 | RD239 |
lineage1.2 | Indo-Oceanic | EAI1;EAI2 | RD239 |
lineage1.2.1 | Indo-Oceanic | EAI2 | RD239 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 |
lineage2 | East-Asian | Beijing | RD105 |
lineage2.1 | East-Asian (non-Beijing) | None | None |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 |
lineage2.2.2 | East-Asian (Beijing) | Beijing-RD105/RD207 | RD105;RD207 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 |
lineage2.2.1.2 | East-Asian (Beijing) | Beijing-RD142 | RD105;RD207;RD181;RD142 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 |
lineage3 | East-African-Indian | CAS | RD750 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 |
lineage3.1.2 | East-African-Indian | CAS;CAS2 | RD750 |
lineage3.1.2.1 | East-African-Indian | CAS2 | RD750 |
lineage3.1.2.2 | East-African-Indian | CAS | RD750 |
lineage4 | Euro-American | LAM;T;S;X;H | None |
lineage4.1 | Euro-American | T;X;H | None |
lineage4.1.2 | Euro-American (X-type) | T;H | None |
lineage4.1.2.1 | Euro-American (X-type) | T1;H1 | RD182 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None |
lineage4.1.1.1 | Euro-American (X-type) | X2 | RD183 |
lineage4.1.1.3 | Euro-American (Haarlem) | X1;X3 | RD193 |
lineage4.2 | Euro-American | H;T;LAM | None |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None |
lineage4.2.2.1 | Euro-American | LAM7-TUR | None |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 |
lineage4.4 | Euro-American | S;T | None |
lineage4.4.2 | Euro-American | T1;T2 | None |
lineage4.4.1 | Euro-American (S-type) | S;T | None |
lineage4.4.1.2 | Euro-American | T1 | None |
lineage4.4.1.1 | Euro-American | S;Orphans | None |
lineage4.5 | Euro-American | H;T | RD122 |
lineage4.6 | Euro-American | T;LAM | None |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 |
lineage4.6.1.2 | Euro-American | T2 | RD724 |
lineage4.6.2 | Euro-American | T;LAM | RD726 |
lineage4.6.2.1 | Euro-American | T3 | RD726 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None |
lineage5 | West-Africa 1 | AFRI_2;AFRI_3 | RD711 |
lineage6 | West-Africa 2 | AFRI_1 | RD702 |
lineage7 | Lineage 7 | None | None |
lineageBOV | M. bovis | BOV_1;BOV_2 | None |