Drug1 | Resistance | Supporting Mutations (frequency) |
Isoniazid | ||
Rifampicin | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Ethionamide | ||
Fluoroquinolones | ||
Amikacin | ||
Capreomycin | ||
Kanamycin |
Lineage2 | Family | Main Spoligotype | RDS |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None |
lineage4.4.1 | Euro-American (S-type) | S;T | None |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 |
Gene | Chromosome Position | Mutation | Estimated fraction |
gyrB | 6319 | c.1080G>C | 1.000 |
gyrA | 8480 | c.1179C>T | 1.000 |
gyrA | 8486 | c.1185T>C | 1.000 |
gyrA | 8507 | c.1206C>T | 1.000 |
rpoB | 759571 | c.-236C>A | 1.000 |
rpoB | 759606 | c.-201T>C | 1.000 |
rpoB | 759629 | c.-178T>C | 1.000 |
rpoB | 760181 | c.375T>G | 1.000 |
rpoB | 760184 | c.378A>G | 1.000 |
rpoB | 760196 | c.390C>G | 1.000 |
rpoB | 760235 | c.429T>C | 1.000 |
rpoB | 760283 | c.477G>C | 1.000 |
rpoB | 760298 | c.492G>C | 1.000 |
rpoB | 760340 | c.534G>T | 1.000 |
rpoB | 760424 | c.618C>G | 1.000 |
rpoB | 760646 | c.840C>G | 1.000 |
rpoB | 760649 | c.843G>C | 1.000 |
rpoB | 760655 | c.849A>G | 1.000 |
rpoB | 760946 | c.1140A>G | 1.000 |
rpoB | 760982 | c.1176G>C | 1.000 |
rpoB | 760985 | c.1179G>C | 1.000 |
rpoB | 760991 | c.1185G>C | 1.000 |
rpoB | 761006 | c.1200C>T | 1.000 |
rpoB | 761015 | c.1209G>C | 1.000 |
rpoB | 761027 | c.1221A>G | 1.000 |
rpoB | 761036 | c.1230G>C | 1.000 |
rpoB | 761037 | c.1231T>C | 1.000 |
rpoB | 761057 | c.1251G>C | 1.000 |
rpoB | 761102 | c.1296A>G | 1.000 |
rpoB | 761129 | c.1323G>C | 1.000 |
rpoB | 761133 | c.1327T>C | 1.000 |
rpoB | 761150 | c.1344A>C | 0.857 |
rpoB | 761165 | c.1359G>C | 1.000 |
rpoB | 761180 | c.1374A>C | 1.000 |
rpoB | 761189 | c.1383T>C | 1.000 |
rpoB | 761195 | c.1389G>C | 1.000 |
rpoB | 761207 | c.1401C>T | 1.000 |
rpoB | 761213 | c.1407G>C | 1.000 |
rpoB | 761234 | c.1428G>C | 1.000 |
rpoB | 761249 | c.1443A>G | 1.000 |
rpoB | 761255 | c.1449T>G | 1.000 |
rpoB | 761261 | c.1455G>T | 1.000 |
rpoB | 761286 | c.1480C>T | 1.000 |
rpoB | 761289 | p.Ser495Ala | 1.000 |
rpoB | 761292 | p.Val496Thr | 1.000 |
rpoB | 761300 | c.1494G>C | 1.000 |
rpoB | 761327 | c.1521A>G | 1.000 |
rpoB | 761558 | c.1752C>G | 1.000 |
rpoB | 761579 | c.1773G>C | 1.000 |
rpoB | 761942 | c.2136C>T | 1.000 |
rpoB | 761948 | c.2142G>C | 1.000 |
rpoB | 761954 | c.2148C>G | 1.000 |
rpoB | 761999 | c.2193G>C | 1.000 |
rpoB | 762014 | c.2208C>T | 1.000 |
rpoB | 762017 | c.2211A>G | 1.000 |
rpoB | 762206 | c.2400C>G | 1.000 |
rpoB | 762212 | c.2406G>C | 1.000 |
rpoB | 762233 | c.2427G>C | 1.000 |
rpoB | 762254 | c.2448T>G | 1.000 |
rpoB | 762257 | c.2451C>G | 1.000 |
rpoB | 762260 | c.2454C>T | 1.000 |
rpoB | 762284 | c.2478G>C | 1.000 |
rpoB | 762293 | c.2487T>C | 1.000 |
rpoB | 762863 | c.3057T>C | 1.000 |
rpoB | 762929 | c.3123G>T | 1.000 |
rpoB | 762962 | c.3156C>T | 1.000 |
rpoB | 762971 | c.3165G>A | 1.000 |
rpoB | 762989 | c.3183G>C | 1.000 |
rpoB | 762995 | c.3189G>T | 1.000 |
rpoB | 763028 | c.3222T>C | 1.000 |
rpoB | 763031 | c.3225T>G | 1.000 |
rpoB | 763040 | c.3234C>G | 1.000 |
rpoB | 763070 | c.3264T>C | 1.000 |
rpoB | 763115 | c.3309T>C | 1.000 |
rpoB | 763136 | c.3330C>T | 1.000 |
rpoB | 763148 | c.3342G>C | 1.000 |
rpoB | 763158 | c.3352C>T | 1.000 |
rpoB | 763166 | c.3360A>G | 1.000 |
rpoC | 763351 | c.-19T>C | 1.000 |
rpoC | 763352 | c.-18T>A | 1.000 |
rpoC | 763402 | c.33C>A | 1.000 |
rpoC | 763411 | c.42T>G | 1.000 |
rpoC | 763414 | c.45T>C | 1.000 |
rpoC | 763594 | c.225C>T | 1.000 |
rpoC | 763603 | c.234C>T | 1.000 |
rpoC | 763660 | c.291T>G | 1.000 |
rpoC | 763675 | c.306C>G | 1.000 |
rpoC | 763696 | c.327T>C | 1.000 |
rpoC | 763702 | c.333C>G | 1.000 |
rpoC | 763717 | c.348T>C | 1.000 |
rpoC | 763723 | c.354G>C | 1.000 |
rpoC | 763732 | c.363C>G | 1.000 |
rpoC | 763741 | c.372C>T | 1.000 |
rpoC | 763744 | c.375G>C | 1.000 |
rpoC | 763765 | c.396T>C | 1.000 |
rpoC | 763774 | c.405G>C | 1.000 |
rpoC | 764140 | c.771C>T | 1.000 |
rpoC | 764257 | c.888G>C | 1.000 |
rpoC | 764665 | c.1296C>G | 1.000 |
rpoC | 764713 | c.1344G>C | 1.000 |
rpoC | 764716 | c.1347G>C | 1.000 |
rpoC | 764752 | c.1383G>C | 1.000 |
rpoC | 764764 | c.1395T>C | 1.000 |
rpoC | 764797 | c.1428G>C | 1.000 |
rpoC | 764803 | c.1434C>T | 1.000 |
rpoC | 764809 | c.1440C>T | 1.000 |
rpoC | 764815 | c.1446A>G | 1.000 |
rpoC | 764827 | c.1458G>C | 1.000 |
rpoC | 764858 | c.1489T>C | 1.000 |
rpoC | 764888 | c.1519T>C | 1.000 |
rpoC | 764893 | c.1524T>C | 1.000 |
rpoC | 764911 | c.1542A>G | 1.000 |
rpoC | 764932 | c.1563C>A | 0.947 |
rpoC | 764935 | c.1566T>C | 1.000 |
rpoC | 764948 | c.1579T>C | 1.000 |
rpoC | 764968 | c.1599T>C | 1.000 |
rpoC | 764995 | c.1626C>G | 1.000 |
rpoC | 765047 | c.1678T>C | 1.000 |
rpoC | 765055 | c.1686C>G | 1.000 |
rpoC | 765103 | c.1734G>T | 1.000 |
rpoC | 765478 | c.2109T>C | 1.000 |
rpoC | 765499 | c.2130C>G | 1.000 |
rpoC | 765508 | c.2139C>G | 1.000 |
rpoC | 765529 | c.2160C>T | 1.000 |
rpoC | 765541 | c.2172C>G | 1.000 |
rpoC | 765553 | c.2184C>T | 1.000 |
rpoC | 765556 | c.2187G>C | 1.000 |
rpoC | 765559 | c.2190G>C | 1.000 |
rpoC | 765580 | c.2211G>C | 1.000 |
rpoC | 765613 | p.His748Gln | 1.000 |
rpoC | 765658 | c.2289C>T | 1.000 |
rpoC | 765700 | c.2331T>C | 1.000 |
rpoC | 765734 | c.2365T>C | 1.000 |
rpoC | 765739 | c.2370G>T | 1.000 |
rpoC | 765751 | c.2382C>G | 1.000 |
rpoC | 765753 | p.Asp795Ala | 1.000 |
rpoC | 765772 | c.2403C>G | 1.000 |
rpoC | 765784 | c.2415C>G | 1.000 |
rpoC | 765793 | c.2424C>G | 1.000 |
rpoC | 765796 | c.2427C>T | 1.000 |
rpoC | 765826 | c.2457T>C | 1.000 |
rpoC | 765835 | c.2466C>T | 1.000 |
rpoC | 765883 | c.2514C>G | 1.000 |
rpoC | 765886 | c.2517C>G | 1.000 |
rpoC | 765892 | c.2523T>C | 1.000 |
rpoC | 765967 | c.2598C>T | 1.000 |
rpoC | 765979 | c.2610C>G | 1.000 |
rpoC | 765982 | c.2613C>T | 1.000 |
rpoC | 765994 | c.2625A>T | 1.000 |
rpoC | 766009 | c.2640G>C | 1.000 |
rpoC | 766010 | c.2641T>A | 1.000 |
rpoC | 766021 | c.2652G>C | 1.000 |
rpoC | 766027 | c.2658G>C | 1.000 |
rpoC | 766043 | p.Gln892Glu | 1.000 |
rpoC | 766054 | c.2685C>G | 1.000 |
rpoC | 766061 | p.Val898Ile | 1.000 |
rpoC | 766408 | c.3039C>T | 1.000 |
rpoC | 766426 | c.3057C>T | 1.000 |
rpoC | 766447 | c.3078T>C | 1.000 |
rpoC | 766459 | c.3090G>T | 0.923 |
rpoC | 766483 | c.3114G>C | 1.000 |
rpoC | 766484 | p.Val1039Ile | 1.000 |
rpoC | 766492 | c.3123T>C | 1.000 |
rpoC | 766495 | c.3126C>T | 1.000 |
rpoC | 766522 | c.3153C>G | 1.000 |
rpoC | 766528 | c.3159T>C | 1.000 |
rpoC | 766531 | c.3162G>T | 1.000 |
rpoC | 766540 | p.Asp1057Glu | 1.000 |
rpoC | 766549 | c.3180G>C | 1.000 |
rpoC | 766726 | c.3357T>C | 1.000 |
rpoC | 766738 | c.3369G>C | 1.000 |
rpoC | 766801 | c.3432C>G | 1.000 |
rpoC | 766804 | c.3435A>G | 1.000 |
rpoC | 766861 | c.3492G>C | 1.000 |
rpoC | 766864 | c.3495G>C | 1.000 |
rpoC | 766894 | c.3525T>C | 1.000 |
rpoC | 766895 | c.3526T>C | 1.000 |
rpoC | 766900 | c.3531T>C | 1.000 |
rpoC | 766903 | c.3534C>T | 1.000 |
rpoC | 766918 | c.3549C>T | 1.000 |
rpoC | 766933 | c.3564A>G | 1.000 |
rpoC | 766945 | c.3576A>G | 1.000 |
rpoC | 766963 | c.3594T>C | 1.000 |
rpoC | 766972 | c.3603G>C | 1.000 |
rpoC | 766996 | c.3627C>T | 1.000 |
rpoC | 767032 | c.3663G>T | 1.000 |
rpoC | 767035 | c.3666G>T | 1.000 |
rpoC | 767059 | c.3690T>G | 1.000 |
rpoC | 767062 | c.3693C>A | 1.000 |
rpoC | 767098 | c.3729T>C | 1.000 |
rpoC | 767119 | c.3750A>G | 1.000 |
rpoC | 767134 | c.3765C>A | 1.000 |
rpoC | 767158 | c.3789T>C | 0.923 |
rpoC | 767167 | c.3798C>G | 1.000 |
rpoC | 767180 | p.Ala1271Gln | 1.000 |
rpoC | 767191 | c.3822C>G | 1.000 |
rpsL | 781649 | c.90T>C | 1.000 |
rpsL | 781655 | c.96T>C | 1.000 |
rpsL | 781700 | c.141G>C | 1.000 |
rpsL | 781703 | c.144G>T | 1.000 |
rpsL | 781715 | c.156T>C | 1.000 |
rpsL | 781728 | c.169T>C | 1.000 |
rpsL | 781736 | c.177T>C | 1.000 |
rpsL | 781742 | c.183C>T | 1.000 |
rpsL | 781754 | c.195G>C | 1.000 |
rpsL | 781760 | c.201T>C | 1.000 |
rpsL | 781769 | c.210G>A | 1.000 |
rpsL | 781772 | c.213C>T | 1.000 |
rpsL | 781808 | c.249C>T | 1.000 |
rpsL | 781811 | c.252C>T | 1.000 |
rpsL | 781832 | c.273T>C | 1.000 |
rpsL | 781838 | c.279G>C | 1.000 |
rpsL | 781841 | c.282C>G | 1.000 |
rpsL | 781865 | c.306G>C | 1.000 |
rpsL | 781868 | c.309T>C | 1.000 |
rpsL | 781871 | c.312G>C | 1.000 |
rpsL | 781877 | c.318T>C | 1.000 |
rpsL | 781892 | c.333A>G | 1.000 |
rpsL | 781898 | c.339A>T | 1.000 |
rpsL | 781916 | c.357T>C | 1.000 |
rpsL | 781929 | p.Gly124Ser | 1.000 |
rplC | 800814 | c.6A>G | 1.000 |
rplC | 800817 | c.9A>T | 1.000 |
rrs | 1471923 | r.78t>c | 1.000 |
rrs | 1471925 | r.80t>c | 1.000 |
rrs | 1471932 | r.87a>g | 1.000 |
rrs | 1471934 | r.89a>g | 1.000 |
rrs | 1471969 | r.124t>c | 1.000 |
rrs | 1471970 | r.125g>a | 1.000 |
rrs | 1472028 | r.183a>t | 1.000 |
rrs | 1472029 | r.184c>t | 1.000 |
rrs | 1472030 | r.185g>t | 1.000 |
rrs | 1472031 | r.186g>a | 1.000 |
rrs | 1472034 | r.189t>c | 1.000 |
rrs | 1472044 | r.199g>t | 1.000 |
rrs | 1472053 | r.208agc>a | 1.000 |
rrs | 1472061 | r.216a>t | 1.000 |
rrs | 1472075 | r.230a>g | 1.000 |
rrs | 1472108 | r.263c>t | 1.000 |
rrs | 1472969 | r.1124a>g | 1.000 |
rrs | 1472970 | r.1125c>g | 1.000 |
rrs | 1472977 | r.1132g>c | 1.000 |
rrs | 1472978 | r.1133t>c | 1.000 |
rrs | 1473105 | r.1260g>a | 1.000 |
rrs | 1473120 | r.1275c>ct | 0.850 |
rrs | 1473123 | r.1278a>t | 0.947 |
rrs | 1473145 | r.1300c>t | 1.000 |
rrs | 1473166 | r.1321g>a | 1.000 |
rrs | 1473290 | r.1445c>t | 1.000 |
rrl | 1473668 | r.11c>t | 1.000 |
rrl | 1473756 | r.99g>a | 1.000 |
rrl | 1473758 | r.101g>t | 1.000 |
rrl | 1473806 | r.149c>t | 1.000 |
rrl | 1473877 | r.220g>a | 1.000 |
rrl | 1473898 | r.241c>t | 1.000 |
rrl | 1473899 | r.242a>c | 1.000 |
rrl | 1473938 | r.281g>a | 1.000 |
rrl | 1473939 | r.282c>t | 1.000 |
rrl | 1473943 | r.286g>t | 1.000 |
rrl | 1473986 | r.329t>c | 1.000 |
rrl | 1473995 | r.338g>t | 1.000 |
rrl | 1474001 | r.344c>t | 1.000 |
rrl | 1474009 | r.352a>g | 1.000 |
rrl | 1474012 | r.355c>t | 1.000 |
rrl | 1474044 | r.387c>t | 1.000 |
rrl | 1474054 | r.397t>c | 1.000 |
rrl | 1474093 | r.436g>t | 1.000 |
rrl | 1474099 | r.442g>a | 1.000 |
rrl | 1474103 | r.446a>t | 1.000 |
rrl | 1474140 | r.483c>t | 1.000 |
rrl | 1474151 | r.494c>t | 1.000 |
rrl | 1474181 | r.524c>t | 1.000 |
rrl | 1474249 | r.592g>t | 1.000 |
rrl | 1474291 | r.634tttcctctccggagga>t | 1.000 |
rrl | 1474356 | r.699t>c | 1.000 |
rrl | 1474362 | r.705a>g | 1.000 |
rrl | 1474376 | r.719t>c | 1.000 |
rrl | 1474639 | r.982g>a | 1.000 |
rrl | 1474794 | r.1137c>t | 1.000 |
rrl | 1474812 | r.1155g>a | 1.000 |
rrl | 1474823 | r.1166c>t | 1.000 |
rrl | 1474831 | r.1174a>g | 1.000 |
rrl | 1474904 | r.1247g>a | 1.000 |
rrl | 1474956 | r.1299c>t | 1.000 |
rrl | 1474960 | r.1303c>g | 1.000 |
rrl | 1474962 | r.1305t>c | 1.000 |
rrl | 1474963 | r.1306g>t | 1.000 |
rrl | 1474964 | r.1307t>a | 1.000 |
rrl | 1474965 | r.1308g>c | 1.000 |
rrl | 1474970 | r.1313g>a | 1.000 |
rrl | 1475006 | r.1349a>t | 1.000 |
rrl | 1475013 | r.1356g>a | 1.000 |
rrl | 1475061 | r.1404c>t | 1.000 |
rrl | 1475088 | r.1431a>t | 1.000 |
rrl | 1475199 | r.1542g>a | 1.000 |
rrl | 1475206 | r.1549c>t | 0.900 |
rrl | 1475291 | r.1634a>c | 1.000 |
rrl | 1475313 | r.1656g>a | 1.000 |
rrl | 1475315 | r.1658a>t | 1.000 |
rrl | 1475355 | r.1698c>t | 1.000 |
rrl | 1475369 | r.1712g>t | 1.000 |
rrl | 1475402 | r.1745c>t | 1.000 |
rrl | 1475419 | r.1762c>t | 1.000 |
rrl | 1475436 | r.1779c>t | 1.000 |
rrl | 1475483 | r.1826c>t | 1.000 |
rrl | 1475505 | r.1848g>a | 1.000 |
rrl | 1475526 | r.1869c>a | 1.000 |
rrl | 1475573 | r.1916g>a | 1.000 |
rrl | 1475599 | r.1942a>g | 1.000 |
rrl | 1475608 | r.1951t>c | 1.000 |
rrl | 1475642 | r.1985t>c | 1.000 |
rrl | 1475657 | r.2000a>g | 1.000 |
rrl | 1475659 | r.2002g>t | 1.000 |
rrl | 1475758 | r.2101ac>a | 1.000 |
rrl | 1475763 | r.2106c>t | 1.000 |
rrl | 1475765 | r.2108ag>a | 1.000 |
rrl | 1475881 | r.2224t>c | 1.000 |
rrl | 1476131 | r.2474c>t | 1.000 |
rrl | 1476183 | r.2526a>c | 1.000 |
rrl | 1476214 | r.2557g>t | 1.000 |
rrl | 1476215 | r.2558c>t | 1.000 |
rrl | 1476224 | r.2567a>g | 1.000 |
rrl | 1476281 | r.2624t>c | 1.000 |
rrl | 1476628 | r.2971t>a | 1.000 |
rrl | 1476689 | r.3032a>t | 1.000 |
rrl | 1476690 | r.3033c>t | 1.000 |
rrl | 1476693 | r.3036g>a | 1.000 |
rrl | 1476695 | r.3038t>a | 1.000 |
rrl | 1476716 | r.3059a>c | 1.000 |
inhA | 1674636 | c.435C>G | 1.000 |
inhA | 1674660 | c.459G>C | 1.000 |
rpsA | 1833589 | c.48A>T | 1.000 |
rpsA | 1833595 | c.54T>C | 1.000 |
rpsA | 1833610 | c.69C>T | 1.000 |
rpsA | 1833661 | c.120A>G | 1.000 |
rpsA | 1833667 | c.126C>G | 1.000 |
rpsA | 1833724 | c.183C>G | 1.000 |
rpsA | 1833727 | c.186G>C | 1.000 |
rpsA | 1833742 | c.201A>G | 1.000 |
rpsA | 1833745 | c.204G>C | 1.000 |
rpsA | 1833748 | c.207C>G | 1.000 |
rpsA | 1833772 | c.231C>T | 1.000 |
rpsA | 1833787 | c.246C>G | 1.000 |
rpsA | 1833790 | c.249T>C | 1.000 |
rpsA | 1833808 | c.267G>C | 1.000 |
rpsA | 1833811 | c.270G>T | 1.000 |
rpsA | 1833835 | c.294C>T | 1.000 |
rpsA | 1833838 | c.297G>C | 1.000 |
rpsA | 1833841 | c.300C>G | 1.000 |
rpsA | 1833847 | c.306C>G | 1.000 |
rpsA | 1833856 | c.315A>G | 1.000 |
rpsA | 1833868 | c.327C>T | 1.000 |
rpsA | 1833874 | c.333T>C | 1.000 |
rpsA | 1833928 | c.387G>C | 1.000 |
rpsA | 1833940 | c.399C>G | 1.000 |
rpsA | 1833971 | c.430C>T | 1.000 |
rpsA | 1833979 | c.438T>C | 1.000 |
rpsA | 1834000 | c.459G>C | 1.000 |
rpsA | 1834021 | c.480C>T | 1.000 |
rpsA | 1834030 | c.489C>G | 1.000 |
rpsA | 1834222 | c.681T>C | 1.000 |
rpsA | 1834249 | c.708T>C | 1.000 |
rpsA | 1834339 | c.798C>T | 1.000 |
rpsA | 1834639 | c.1098T>C | 1.000 |
rpsA | 1834780 | c.1239A>G | 1.000 |
rpsA | 1834789 | c.1248T>C | 1.000 |
rpsA | 1834792 | c.1251G>C | 1.000 |
ahpC | 2726638 | p.Ala149Val | 1.000 |
ahpC | 2726645 | c.453C>G | 1.000 |
ahpC | 2726657 | c.465A>C | 1.000 |
ahpC | 2726669 | p.Asp159Glu | 1.000 |
ahpC | 2726672 | c.480G>A | 1.000 |
ahpC | 2726675 | c.483A>G | 1.000 |
ahpC | 2726681 | c.489A>C | 1.000 |
ahpC | 2726693 | c.501C>A | 1.000 |
ahpC | 2726696 | c.504C>G | 1.000 |
ahpC | 2726717 | c.525A>G | 1.000 |
thyX | 3067316 | c.630T>C | 1.000 |
thyX | 3067325 | c.621T>C | 1.000 |
thyX | 3067349 | c.597C>G | 1.000 |
thyX | 3067355 | c.591T>G | 1.000 |
thyX | 3067367 | c.579C>G | 1.000 |
thyX | 3067391 | c.555C>G | 1.000 |
thyX | 3067394 | c.552C>G | 1.000 |
thyX | 3067898 | p.Asp16Glu | 1.000 |
thyA | 3073953 | c.519A>G | 1.000 |
thyA | 3073977 | c.495T>C | 1.000 |
thyA | 3073989 | c.483A>G | 1.000 |
thyA | 3074001 | c.471G>C | 1.000 |
thyA | 3074004 | c.468A>G | 1.000 |
embC | 4241107 | c.1245G>C | 1.000 |
embC | 4241131 | c.1269G>A | 1.000 |
embC | 4241140 | c.1278A>G | 1.000 |
embC | 4241146 | c.1284C>G | 1.000 |
embC | 4241158 | c.1296T>G | 1.000 |
embC | 4241161 | c.1299C>G | 1.000 |
embC | 4241162 | c.1300T>C | 1.000 |
embA | 4245137 | c.1905T>C | 1.000 |
embA | 4245153 | p.Ile641Val | 1.000 |
embB | 4248169 | c.1656C>G | 1.000 |
embB | 4248172 | c.1659G>C | 1.000 |
embB | 4248220 | c.1707A>T | 1.000 |
embB | 4248241 | c.1728C>T | 1.000 |
embB | 4249469 | p.Leu986Met | 1.000 |
embB | 4249486 | c.2973T>G | 1.000 |
TBProfiler Version: 2.1.1
Analysis | Program |
Mapping | bwa |
Variant Calling | BCFtools |
Drug1 | Sensitivity (%) | Specificity (%) |
Isoniazid | 92.8 (89.9-95.7) | 100 (100-100) |
Rifampicin | 96.2 (93.9-98.5) | 98.1 (96.8-99.4) |
Ethambutal | 88.7 (83.6-93.8) | 81.7 (77.6-85.8) |
Pyrazinamide | 70.9 (62.4-79.4) | 93.9 (90.6-97.2) |
Streptomycin | 87.1 (82.7-91.5) | 89.7 (86.0-93.4) |
Ethionamide | 73.6 (66.7-80.5) | 93.3 (89.6-97.0) |
Moxifloxacin | 60.0 (29.6-90.4) | 68.7 (52.6-84.8) |
Ofloxacin | 85.5 (79.1-91.9) | 94.9 (91.8-98.0) |
Amikacin | 82.9 (74.4-91.4) | 98.3 (96.0-100) |
Capreomycin | 60.7 (50.6-70.8) | 90.7 (87.2-94.2) |
Kanamycin | 87.3 (81.3-93.3) | 93.4 (89.9-96.9) |
Para-aminosalisylic acid | Not determined | Not determined |
Linezolid | Not determined | Not determined |
Clofazimine | Not determined | Not determined |
Bedaquiline | Not determined | Not determined |
Multi drug resistance | 91.2 (87.8-94.6) | 98.4 (97.2-99.6) |
Extremely drug resistance | 75.9 (64.5-87.3) | 98.4 (97.3-99.5) |
Lineage2 | Location | Strain | RD type |
lineage1 | Indo-Oceanic | EAI | RD239 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 |
lineage1.1.1 | Indo-Oceanic | EAI4;EAI5 | RD239 |
lineage1.1.1.1 | Indo-Oceanic | EAI4;ZERO | RD239 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 |
lineage1.1.3 | Indo-Oceanic | EAI6 | RD239 |
lineage1.2 | Indo-Oceanic | EAI1;EAI2 | RD239 |
lineage1.2.1 | Indo-Oceanic | EAI2 | RD239 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 |
lineage2 | East-Asian | Beijing | RD105 |
lineage2.1 | East-Asian (non-Beijing) | None | None |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 |
lineage2.2.2 | East-Asian (Beijing) | Beijing-RD105/RD207 | RD105;RD207 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 |
lineage2.2.1.2 | East-Asian (Beijing) | Beijing-RD142 | RD105;RD207;RD181;RD142 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 |
lineage3 | East-African-Indian | CAS | RD750 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 |
lineage3.1.2 | East-African-Indian | CAS;CAS2 | RD750 |
lineage3.1.2.1 | East-African-Indian | CAS2 | RD750 |
lineage3.1.2.2 | East-African-Indian | CAS | RD750 |
lineage4 | Euro-American | LAM;T;S;X;H | None |
lineage4.1 | Euro-American | T;X;H | None |
lineage4.1.2 | Euro-American (X-type) | T;H | None |
lineage4.1.2.1 | Euro-American (X-type) | T1;H1 | RD182 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None |
lineage4.1.1.1 | Euro-American (X-type) | X2 | RD183 |
lineage4.1.1.3 | Euro-American (Haarlem) | X1;X3 | RD193 |
lineage4.2 | Euro-American | H;T;LAM | None |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None |
lineage4.2.2.1 | Euro-American | LAM7-TUR | None |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 |
lineage4.4 | Euro-American | S;T | None |
lineage4.4.2 | Euro-American | T1;T2 | None |
lineage4.4.1 | Euro-American (S-type) | S;T | None |
lineage4.4.1.2 | Euro-American | T1 | None |
lineage4.4.1.1 | Euro-American | S;Orphans | None |
lineage4.5 | Euro-American | H;T | RD122 |
lineage4.6 | Euro-American | T;LAM | None |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 |
lineage4.6.1.2 | Euro-American | T2 | RD724 |
lineage4.6.2 | Euro-American | T;LAM | RD726 |
lineage4.6.2.1 | Euro-American | T3 | RD726 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None |
lineage5 | West-Africa 1 | AFRI_2;AFRI_3 | RD711 |
lineage6 | West-Africa 2 | AFRI_1 | RD702 |
lineage7 | Lineage 7 | None | None |
lineageBOV | M. bovis | BOV_1;BOV_2 | None |