TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5cc827340f971
Sample: 5cc827340f971

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Summary
ID: 5cc827340f971
Date: Tue Apr 30 11:48:56 2019
Strain: lineage4.1.2.1;lineage1.1.3;lineage1.2.2
Drug-resistance: Drug-resistant

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkatG p.Ile335Thr (1.00), katG p.Ile317Leu (1.00)
Rifampicin
EthambutolRembB p.Ala356Val (1.00), embB p.Tyr384Asn (1.00), embB p.Asn399Asp (1.00)
Pyrazinamide
Streptomycin
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage4.1.2.1Euro-American (X-type)T1;H1RD182

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB5314c.75C>T1.000
gyrB5326c.87T>C1.000
gyrB5338c.99C>T1.000
gyrB5341c.102T>C1.000
gyrB5344c.105C>G1.000
gyrB5359c.120C>G1.000
gyrB5362c.123T>C1.000
gyrB5363c.124T>C1.000
gyrB5371c.132T>C1.000
gyrB5396p.Ala53Ser1.000
gyrB5767c.528C>T0.800
gyrB5772p.Ala178Glu0.800
gyrB5774p.Val179Ile0.800
gyrB5788c.549G>C0.857
gyrB5789p.Glu184Gln0.857
gyrB5803c.564A>G0.935
gyrB5806c.567C>G0.935
gyrB5809c.570C>G0.935
gyrB5812c.573C>G0.935
gyrB5819c.580C>T0.941
gyrB5824c.585A>G0.943
gyrB5827c.588G>A0.946
gyrB5848c.609G>C0.946
gyrB5863c.624G>C1.000
gyrB5893c.654C>G0.957
gyrB5899c.660C>T0.889
gyrB5902c.663A>G0.889
gyrB5908c.669C>T0.906
gyrB5915p.Val226Thr0.914
gyrB6082c.843G>A0.917
gyrB6085c.846C>A0.917
gyrB6091c.852G>C0.917
gyrB6097c.858G>A0.286
gyrB6100c.861G>C0.293
gyrB6115c.876A>G1.000
gyrB6123p.Ala295Gly0.390
gyrB6127c.888G>T0.392
gyrB6172c.933C>T0.521
gyrB6190c.951A>G1.000
gyrB6214c.975G>C1.000
gyrB6238c.999G>A1.000
gyrB6242p.Arg335Lys1.000
gyrB6253c.1014G>C1.000
gyrB6265c.1026C>T1.000
gyrB6280c.1041T>C1.000
gyrB6286c.1047T>C1.000
gyrB6292c.1053G>A1.000
gyrB6298c.1059C>G0.778
gyrB6307c.1068T>G1.000
gyrB6316c.1077G>C1.000
gyrB6337c.1098G>A0.872
gyrB6673c.1434A>C1.000
gyrB6674c.1435C>T0.980
gyrB6700c.1461T>C1.000
gyrB6703c.1464G>C1.000
gyrB6706c.1467G>A1.000
gyrB6709c.1470A>G1.000
gyrB6712c.1473G>C1.000
gyrB6730c.1491A>G0.879
gyrB6733c.1494G>A1.000
gyrB6745c.1506T>C1.000
gyrB6751c.1512G>C1.000
gyrB6760c.1521G>T0.438
gyrB6769c.1530C>T1.000
gyrB6775c.1536G>C1.000
gyrB6787c.1548G>A1.000
gyrB6808c.1569C>T0.600
gyrB6811c.1572C>T1.000
gyrB6892c.1653C>T1.000
gyrB6898c.1659G>T1.000
gyrB6902c.1663C>T1.000
gyrB6911p.Asn558His1.000
gyrB6931c.1692A>G1.000
gyrB6934c.1695A>G1.000
gyrB6949c.1710A>G1.000
gyrB6955c.1716G>A1.000
gyrB6967c.1728T>C1.000
gyrB6970c.1731C>T0.488
gyrB6976c.1737A>G1.000
gyrB6982c.1743A>C1.000
gyrB6985c.1746C>T0.568
gyrB6994c.1755C>G1.000
gyrB6997c.1758G>A1.000
gyrB7000c.1761C>T1.000
gyrB7003c.1764C>T1.000
gyrB7006c.1767T>G0.917
gyrB7007c.1768C>T1.000
gyrB7023p.Leu595Gln1.000
gyrB7048c.1809G>A1.000
gyrB7081c.1842T>G0.900
gyrB7090c.1851C>T1.000
gyrB7093c.1854T>C1.000
gyrB7099c.1860G>A1.000
gyrB7129c.1890T>G1.000
gyrB7132c.1893T>G1.000
gyrB7136c.1897T>C1.000
gyrB7141c.1902T>C1.000
gyrB7147c.1908G>C1.000
gyrB7150c.1911G>C1.000
gyrB7153c.1914G>T1.000
gyrB7156c.1917C>T1.000
gyrB7174c.1935C>T1.000
gyrB7177c.1938G>A1.000
gyrB7178c.1939T>C1.000
gyrB7201c.1962G>A0.979
gyrB7213c.1974G>C0.976
gyrB7216c.1977G>C0.974
gyrB7225c.1986T>C0.977
gyrA7349c.48A>G1.000
gyrA7361c.60C>T1.000
gyrA7362p.Glu21Gln1.000
gyrA7391c.90C>T1.000
gyrA7394c.93T>C1.000
gyrA7412c.111C>G1.000
gyrA7422c.121C>T1.000
gyrA7433c.132G>C1.000
gyrA7451c.150C>G0.949
gyrA7457c.156T>C0.951
gyrA7469c.168C>G0.939
gyrA7472c.171T>C0.939
gyrA7475c.174A>G0.939
gyrA7480p.Phe60Tyr0.949
gyrA7484c.183T>C0.951
gyrA7490c.189C>G0.959
gyrA7502c.201C>T0.980
gyrA7526c.225G>T0.980
gyrA7532c.231T>C0.979
gyrA7541c.240C>G0.980
gyrA7547c.246C>T0.980
gyrA7585p.Ser95Thr1.000
gyrA7601c.300C>G1.000
gyrA7626c.325C>T1.000
gyrA7631c.330G>C1.000
gyrA7643c.342C>T1.000
gyrA7646c.345C>T1.000
gyrA7655c.354G>C1.000
gyrA7658c.357A>G1.000
gyrA7661c.360C>T1.000
gyrA7664c.363T>C1.000
gyrA7670c.369A>G1.000
gyrA7673c.372G>A1.000
gyrA7676c.375G>C1.000
gyrA7679c.378G>C1.000
gyrA7697c.396C>G1.000
gyrA7706c.405C>G1.000
gyrA7725c.424C>T1.000
gyrA7728c.427A>C1.000
gyrA7742c.441G>A1.000
gyrA7769c.468C>T1.000
gyrA7787c.486G>A0.943
gyrA7793c.492G>C0.933
gyrA7797c.496C>T0.933
gyrA7820c.519G>C0.929
gyrA7832c.531G>T0.913
gyrA7835c.534A>G0.913
gyrA7859c.558A>C0.900
gyrA7865c.564T>C0.889
gyrA7868c.567C>T0.867
gyrA8121c.820T>C1.000
gyrA8126c.825G>C1.000
gyrA8156c.855T>C1.000
gyrA8159c.858G>C1.000
gyrA8168c.867A>G1.000
gyrA8177c.876A>C1.000
gyrA8189c.888G>C1.000
gyrA8192c.891C>G1.000
gyrA8198c.897T>C1.000
gyrA8201c.900C>G1.000
gyrA8207c.906T>C1.000
gyrA8219c.918T>C1.000
gyrA8222c.921C>T1.000
gyrA8225c.924T>C1.000
gyrA8231c.930C>G1.000
gyrA8234c.933T>G1.000
gyrA8235c.934T>C1.000
gyrA8253p.Ile318Leu1.000
gyrA8267c.966G>C1.000
gyrA8270c.969G>C1.000
gyrA8283p.Ile328Leu1.000
gyrA8288c.987T>C1.000
gyrA8294c.993T>C1.000
gyrA8324c.1023T>C1.000
gyrA8339c.1038A>G1.000
gyrA8340p.Ala347Ser1.000
gyrA8360c.1059G>A1.000
gyrA8372c.1071G>T1.000
gyrA8375c.1074G>C1.000
gyrA8382p.Leu361Met1.000
gyrA8391p.Tyr364Leu1.000
gyrA8399c.1098T>C1.000
gyrA8402p.Asp367Glu1.000
gyrA8408c.1107A>G1.000
gyrA8417c.1116C>G1.000
gyrA8420c.1119T>C1.000
gyrA8423c.1122G>T1.000
gyrA8426c.1125G>T1.000
gyrA8429c.1128C>G1.000
gyrA8442c.1141C>T1.000
gyrA8447c.1146C>A1.000
gyrA8450c.1149G>A0.941
gyrA8453c.1152A>C1.000
gyrA8462c.1161A>C1.000
gyrA8480c.1179C>T1.000
gyrA8486c.1185T>C1.000
gyrA8489c.1188A>G1.000
gyrA8492c.1191G>C1.000
gyrA8504c.1203G>C1.000
gyrA8516c.1215T>C1.000
gyrA8519c.1218A>G1.000
gyrA8520c.1219C>T1.000
gyrA8531c.1230G>T1.000
gyrA8535p.Glu412Gln1.000
gyrA8543c.1242C>T1.000
gyrA8546c.1245T>C1.000
gyrA8555c.1254G>C1.000
gyrA8561c.1260A>C1.000
gyrA8585c.1284C>T1.000
gyrA8588c.1287G>A1.000
gyrA8619c.1318T>C1.000
gyrA8624c.1323G>T1.000
gyrA8627c.1326C>A1.000
gyrA8633c.1332C>T1.000
gyrA8636c.1335A>C1.000
gyrA8642c.1341A>G1.000
gyrA8655p.Ile452Val1.000
gyrA8672c.1371A>G1.000
gyrA8678c.1377G>A1.000
gyrA8694c.1393C>T0.238
gyrA8870c.1569G>C1.000
gyrA8873c.1572A>T1.000
gyrA8888c.1587C>G1.000
gyrA8897c.1596T>C1.000
gyrA8903c.1602T>C1.000
gyrA8915c.1614A>G1.000
gyrA8924c.1623C>T1.000
gyrA8930c.1629C>G1.000
gyrA8933c.1632G>C1.000
gyrA8936c.1635G>A1.000
gyrA8939c.1638T>C1.000
gyrA8942c.1641G>C1.000
gyrA8946c.1645T>C1.000
gyrA8983p.Cys561Ser1.000
gyrA8987c.1686C>G1.000
gyrA8990c.1689C>G1.000
gyrA8996c.1695T>C1.000
gyrA8998p.Leu566Trp1.000
gyrA9003c.1702C>T1.000
gyrA9023c.1722A>C1.000
gyrA9029c.1728T>A1.000
gyrA9032c.1731T>C1.000
gyrA9035c.1734G>C1.000
gyrA9038c.1737C>G1.000
gyrA9050p.Asp583Glu1.000
gyrA9051c.1750T>C1.000
gyrA9062c.1761C>A1.000
gyrA9071c.1770G>C1.000
gyrA9074c.1773G>C1.000
gyrA9080c.1779G>T1.000
gyrA9089c.1788G>C1.000
gyrA9101c.1800A>G0.968
gyrA9104c.1803C>A0.969
gyrA9110c.1809G>A0.966
gyrA9128c.1827C>A0.926
gyrA9143c.1842T>C0.867
gyrA9147p.Gly616Ser0.857
gyrA9153p.Thr618Glu0.846
gyrA9161c.1860C>G0.846
gyrA9164c.1863G>C0.846
gyrA9167c.1866C>T0.857
gyrA9182c.1881T>C0.857
gyrA9183p.Arg628Lys0.857
gyrA9197c.1896G>C0.955
gyrA9230c.1929T>C0.951
gyrA9236c.1935G>C0.950
gyrA9242c.1941A>C0.946
gyrA9248c.1947G>C0.972
gyrA9252p.Val651Ile0.974
gyrA9266c.1965C>T0.971
gyrA9284c.1983T>C1.000
gyrA9287c.1986G>C1.000
gyrA9291c.1990C>T1.000
gyrA9296c.1995T>C1.000
gyrA9304p.Gly668Glu0.667
gyrA9308p.Asp669Glu0.667
gyrA9315c.2014C>T0.758
gyrA9326c.2025G>T1.000
gyrA9338c.2037G>A1.000
gyrA9341c.2040C>G1.000
gyrA9345c.2044A>C1.000
gyrA9383c.2082T>C1.000
gyrA9386c.2085T>C1.000
gyrA9395c.2094G>C1.000
gyrA9398c.2097T>C0.622
gyrA9419c.2118T>C1.000
gyrA9420p.Ile707Glu1.000
gyrA9435c.2134C>T1.000
gyrA9446c.2145C>T1.000
gyrA9578c.2277C>T1.000
gyrA9584p.Arg761Ser1.000
gyrA9585c.2284T>C1.000
gyrA9590c.2289T>G1.000
gyrA9593c.2292G>A1.000
gyrA9602c.2301T>C1.000
gyrA9626c.2325T>C1.000
gyrA9629c.2328C>G1.000
gyrA9630p.Val777Ile1.000
gyrA9635c.2334T>C1.000
gyrA9638c.2337C>G1.000
gyrA9644c.2343T>C1.000
gyrA9650c.2349G>C1.000
gyrA9662c.2361G>C1.000
gyrA9665c.2364A>G1.000
gyrA9668c.2367C>G1.000
gyrA9674c.2373T>C1.000
gyrA9683c.2382G>C0.929
gyrA9689c.2388G>A0.929
gyrA9701c.2400T>C0.917
gyrA9704c.2403T>C0.917
gyrA9716c.2415T>C0.833
gyrA9722c.2421C>T0.818
rpoB759615c.-192A>AC0.897
rpoB759629c.-178T>C0.960
rpoB759641c.-166T>TC0.878
rpoB759647c.-160T>C1.000
rpoB759818c.12C>T1.000
rpoB759995c.189C>T0.217
rpoB760004c.198A>G0.217
rpoB760005p.Ser67Thr0.217
rpoB760056c.250C>T1.000
rpoB760070c.264T>G1.000
rpoB760091c.285G>C1.000
rpoB760101c.295T>C1.000
rpoB760112c.306T>C0.973
rpoB760118c.312T>C1.000
rpoB760121c.315T>C1.000
rpoB760130p.Asp108Glu1.000
rpoB760139c.333A>G1.000
rpoB760142c.336C>G1.000
rpoB760145c.339C>G1.000
rpoB760181c.375T>A1.000
rpoB760184c.378A>G1.000
rpoB760196c.390C>G1.000
rpoB760235c.429T>C1.000
rpoB760244c.438G>C1.000
rpoB760274c.468G>A1.000
rpoB760295c.489C>T1.000
rpoB760307c.501T>C1.000
rpoB760310c.504G>C1.000
rpoB760328c.522G>C1.000
rpoB760331c.525G>C1.000
rpoB760337c.531C>G0.957
rpoB760340c.534G>T0.959
rpoB760358c.552C>G1.000
rpoB760361c.555T>C1.000
rpoB760370c.564C>G1.000
rpoB760376p.Asp190Glu1.000
rpoB760380p.Thr192Leu1.000
rpoB760403c.597C>T1.000
rpoB760412c.606C>T1.000
rpoB760418c.612G>C1.000
rpoB760424c.618C>G1.000
rpoB760430c.624T>C1.000
rpoB760457c.651C>T1.000
rpoB760472c.666C>T1.000
rpoB760475c.669A>G1.000
rpoB760478c.672C>T1.000
rpoB760481c.675G>T1.000
rpoB760484c.678A>G1.000
rpoB760493c.687C>G1.000
rpoB760520c.714C>G0.970
rpoB760522p.Ser239Asn0.970
rpoB760526c.720G>A0.970
rpoB760532c.726T>C0.969
rpoB760533p.Val243Thr0.969
rpoB760547c.741G>C0.978
rpoB760563p.Arg253Met0.975
rpoB760591p.Val262Ala0.978
rpoB760601c.795C>T0.981
rpoB760611c.805T>C0.980
rpoB760622c.816C>T0.977
rpoB760646c.840C>G0.976
rpoB760649c.843G>C0.977
rpoB760655c.849A>G0.980
rpoB760661c.855A>C0.979
rpoB760670c.864G>C0.974
rpoB760674c.868T>C0.976
rpoB760679c.873A>G0.977
rpoB760683c.877T>C0.977
rpoB760724c.918T>C0.980
rpoB760730c.924T>C0.980
rpoB760748c.942C>G0.976
rpoB760757c.951T>C0.976
rpoB760759p.Val318Ala0.974
rpoB760769c.963C>G0.977
rpoB760793c.987A>G1.000
rpoB760805c.999G>C1.000
rpoB760817c.1011A>G1.000
rpoB760820c.1014T>C1.000
rpoB760826c.1020C>G1.000
rpoB760830c.1024T>C1.000
rpoB760841c.1035T>C1.000
rpoB760845p.Thr347Pro1.000
rpoB760856c.1050C>G1.000
rpoB760886c.1080A>G1.000
rpoB760916c.1110C>G1.000
rpoB760919c.1113C>G1.000
rpoB760925c.1119T>C1.000
rpoB760928c.1122G>C1.000
rpoB760931c.1125C>G1.000
rpoB760937c.1131G>A1.000
rpoB760946c.1140A>G1.000
rpoB760973c.1167G>C1.000
rpoB760982c.1176G>T1.000
rpoB760985c.1179G>T1.000
rpoB760991c.1185G>T1.000
rpoB761006c.1200C>T1.000
rpoB761015c.1209G>C1.000
rpoB761021c.1215G>C1.000
rpoB761027c.1221A>G1.000
rpoB761036c.1230G>C0.960
rpoB761037c.1231T>C0.959
rpoB761051c.1245G>T0.962
rpoB761057c.1251G>C0.962
rpoB761060c.1254C>G0.962
rpoB761063c.1257C>G0.962
rpoB761096c.1290G>C0.935
rpoB761097c.1291A>T0.935
rpoB761102c.1296A>G0.941
rpoB761132c.1326G>T0.926
rpoB761133c.1327T>C0.926
rpoB761150c.1344A>C0.926
rpoB761168c.1362C>G0.949
rpoB761180c.1374A>C0.956
rpoB761189c.1383T>G0.953
rpoB761192c.1386C>G0.952
rpoB761195c.1389G>C0.952
rpoB761198c.1392G>C0.953
rpoB761240c.1434C>T1.000
rpoB761249c.1443A>G1.000
rpoB761255c.1449T>C1.000
rpoB761261c.1455G>T1.000
rpoB761264c.1458C>G1.000
rpoB761282c.1476C>G1.000
rpoB761327c.1521A>G1.000
rpoB761345c.1539G>T1.000
rpoB761354c.1548C>T1.000
rpoB761360c.1554T>C1.000
rpoB761362p.Ser519Thr1.000
rpoB761374p.Val523Glu1.000
rpoB761414c.1608A>G0.969
rpoB761423c.1617T>C0.969
rpoB761432c.1626C>T0.957
rpoB761435c.1629T>C0.956
rpoB761438c.1632G>C0.956
rpoB761444c.1638T>C0.955
rpoB761452p.Val549Glu0.955
rpoB761457p.Pro551Ser0.956
rpoB761465c.1659G>A0.952
rpoB761471c.1665C>T0.953
rpoB761477c.1671C>T0.957
rpoB761492c.1686G>C0.955
rpoB761504c.1698C>G0.956
rpoB761510c.1704T>C0.952
rpoB761531c.1725C>G1.000
rpoB761537c.1731C>G1.000
rpoB761558c.1752C>G1.000
rpoB761570c.1764T>C1.000
rpoB761573c.1767C>G0.956
rpoB761579c.1773G>C1.000
rpoB761606c.1800C>G0.976
rpoB761612c.1806G>T0.976
rpoB761615c.1809A>C0.978
rpoB761636c.1830G>T0.976
rpoB761645c.1839C>A0.976
rpoB761648c.1842T>C0.974
rpoB761666c.1860G>C1.000
rpoB761690c.1884G>C1.000
rpoB761725p.Glu640Ala1.000
rpoB761732c.1926C>G1.000
rpoB761735c.1929C>G1.000
rpoB761750c.1944G>C0.973
rpoB761765c.1959T>C0.971
rpoB761772p.His656Ala0.970
rpoB761778p.Asn658Asp0.970
rpoB761791p.Arg662His0.968
rpoB761813c.2007T>C0.967
rpoB761828c.2022C>T0.957
rpoB761834c.2028T>C0.955
rpoB761837c.2031C>T0.950
rpoB761848p.Cys681Ser0.909
rpoB761852c.2046C>G0.909
rpoB761858c.2052G>C0.909
rpoB761873c.2067A>C0.917
rpoB761885c.2079T>C0.941
rpoB761891c.2085G>C0.944
rpoB761909c.2103T>C0.917
rpoB761912c.2106T>C0.917
rpoB761913p.Asp703Gln0.917
rpoB761916p.Asp704Asn0.917
rpoB761921c.2115C>T0.923
rpoB761930c.2124G>C0.971
rpoB761954c.2148C>G0.976
rpoB762008c.2202C>G0.981
rpoB762014c.2208C>T0.981
rpoB762047c.2241G>A0.980
rpoB762053c.2247T>C0.978
rpoB762062c.2256T>C1.000
rpoB762065c.2259T>C1.000
rpoB762083c.2277T>C0.976
rpoB762086c.2280G>C0.976
rpoB762101c.2295C>G0.980
rpoB762114p.Ile770Val0.980
rpoB762131c.2325C>G0.980
rpoB762134c.2328C>G0.980
rpoB762143c.2337T>C0.959
rpoB762167c.2361T>C0.956
rpoB762185c.2379G>C0.951
rpoB762233c.2427G>T0.966
rpoB762254c.2448T>G1.000
rpoB762257c.2451C>G1.000
rpoB762266c.2460T>C0.960
rpoB762281c.2475G>A0.839
rpoB762284c.2478G>C0.853
rpoB762293c.2487T>C0.969
rpoB762317c.2511A>G0.970
rpoB762338c.2532T>C0.970
rpoB762341c.2535G>C0.971
rpoB762347c.2541T>C0.972
rpoB762362p.Glu852Asp0.971
rpoB762369c.2563T>C0.970
rpoB762395c.2589G>C1.000
rpoB762398c.2592T>C1.000
rpoB762401c.2595G>C1.000
rpoB762404c.2598T>C1.000
rpoB762410c.2604T>C1.000
rpoB762416c.2610A>G1.000
rpoB762431c.2625C>T1.000
rpoB762449c.2643C>A1.000
rpoB762470c.2664G>C1.000
rpoB762491c.2685T>C1.000
rpoB762509c.2703T>G1.000
rpoB762510p.Ala902Pro0.980
rpoB762533c.2727T>C1.000
rpoB762536c.2730T>C1.000
rpoB762537c.2731T>C1.000
rpoB762551c.2745C>T0.944
rpoB762563c.2757G>A1.000
rpoB762581c.2775T>C1.000
rpoB762587c.2781G>A1.000
rpoB762710c.2904G>T1.000
rpoB762729p.Gln975Lys1.000
rpoB762736p.Ala977Glu1.000
rpoB762749c.2943C>T1.000
rpoB762753c.2947T>C1.000
rpoB762756p.Ser984Gly0.400
rpoB762776c.2970C>G1.000
rpoB762782c.2976T>C1.000
rpoB762789p.Leu995Met1.000
rpoB762794c.2988C>G1.000
rpoB762795p.Asp997Asn1.000
rpoB762812c.3006C>G0.981
rpoB762813p.Met1003Val0.981
rpoB762818c.3012C>G0.982
rpoB762827c.3021G>C0.983
rpoB762833c.3027C>T0.983
rpoB762857c.3051C>G0.984
rpoB762860c.3054G>C0.983
rpoB762902c.3096C>T0.971
rpoB762917c.3111C>T0.971
rpoB762929c.3123G>T0.938
rpoB762962c.3156C>T1.000
rpoB762983c.3177C>G1.000
rpoB762995c.3189G>T1.000
rpoB763031c.3225T>C1.000
rpoB763034c.3228C>G1.000
rpoB763040c.3234C>G1.000
rpoB763070c.3264T>C1.000
rpoB763082c.3276C>T1.000
rpoB763085c.3279C>G1.000
rpoB763115c.3309T>C0.976
rpoB763166c.3360A>G0.966
rpoB763169c.3363A>G0.962
rpoB763202c.3396A>C0.944
rpoB763205c.3399G>T0.944
rpoB763206c.3400A>T0.914
rpoB763226c.3420A>G0.953
rpoB763238c.3432T>C0.897
rpoB763241c.3435G>A0.895
rpoB763250c.3444C>T0.879
rpoB763253c.3447G>T0.879
rpoB763262c.3456C>A0.935
rpoB763265c.3459G>A0.935
rpoB763283c.3477T>C0.905
rpoB763284c.3478C>T0.905
rpoB763289c.3483C>G0.905
rpoC763351c.-19T>C0.951
rpoC763352c.-18T>A0.952
rpoC763402c.33C>T1.000
rpoC763409c.40C>T1.000
rpoC763414c.45T>G1.000
rpoC763441c.72C>T1.000
rpoC763444c.75T>C1.000
rpoC763456c.87A>G1.000
rpoC763486c.117T>G1.000
rpoC763528c.159G>A0.984
rpoC763546c.177A>G0.985
rpoC763570c.201G>C0.985
rpoC763594c.225C>T0.984
rpoC763603c.234C>T0.985
rpoC763618c.249C>T0.984
rpoC763636c.267T>C0.982
rpoC763660c.291T>G0.981
rpoC763669c.300C>G0.981
rpoC763675c.306C>G0.983
rpoC763703c.334T>A0.977
rpoC763709c.340C>T0.978
rpoC763714c.345G>C1.000
rpoC763726c.357C>T0.981
rpoC763732c.363C>G0.981
rpoC763741c.372C>T0.981
rpoC763744c.375G>C1.000
rpoC763765c.396T>G1.000
rpoC763771c.402C>T1.000
rpoC763780c.411C>G1.000
rpoC763792p.Glu141Asp1.000
rpoC763801c.432C>G1.000
rpoC763807c.438T>C1.000
rpoC763836p.Ala156Val1.000
rpoC763851p.Ala161Gly1.000
rpoC763855c.486C>T1.000
rpoC763858c.489A>G1.000
rpoC763872p.Gly168Ala1.000
rpoC763876p.Glu169Asp1.000
rpoC763879c.510A>G1.000
rpoC763888c.519G>C1.000
rpoC763891c.522G>C1.000
rpoC763894c.525A>G1.000
rpoC763936c.567C>G1.000
rpoC763939c.570G>A1.000
rpoC763951c.582G>A1.000
rpoC763963c.594C>G1.000
rpoC763967p.Gly200Ser1.000
rpoC763972c.603C>T1.000
rpoC763987c.618C>T1.000
rpoC763993c.624C>A0.929
rpoC763996c.627T>C1.000
rpoC764005c.636G>C1.000
rpoC764011c.642T>C1.000
rpoC764024c.655T>C1.000
rpoC764040p.Ser224Thr1.000
rpoC764044c.675T>G1.000
rpoC764059c.690G>T1.000
rpoC764083c.714A>G1.000
rpoC764101c.732C>G1.000
rpoC764140c.771C>T1.000
rpoC764159c.790C>T1.000
rpoC764167c.798G>A1.000
rpoC764188c.819A>G0.964
rpoC764195p.Ser276Ile0.962
rpoC764215c.846A>C0.970
rpoC764218c.849C>T0.970
rpoC764242c.873C>T0.962
rpoC764245c.876C>A0.962
rpoC764246c.877C>T0.962
rpoC764263c.894G>C1.000
rpoC764266c.897T>C1.000
rpoC764278c.909A>G1.000
rpoC764293c.924G>C1.000
rpoC764317c.948C>G1.000
rpoC764320c.951C>G1.000
rpoC764365c.996C>T1.000
rpoC764377c.1008C>G1.000
rpoC764380c.1011G>C1.000
rpoC764381c.1012T>A1.000
rpoC764387c.1018T>C1.000
rpoC764405c.1036A>C1.000
rpoC764428c.1059G>C1.000
rpoC764431c.1062G>C1.000
rpoC764434c.1065A>G1.000
rpoC764446c.1077T>C0.642
rpoC764449c.1080G>C0.638
rpoC764452c.1083T>C0.638
rpoC764458c.1089G>C1.000
rpoC764461c.1092A>G1.000
rpoC764497c.1128A>G1.000
rpoC764503c.1134G>C1.000
rpoC764521c.1152T>C1.000
rpoC764527c.1158C>T1.000
rpoC764536c.1167G>T1.000
rpoC764539c.1170C>G0.980
rpoC764554c.1185C>T0.982
rpoC764575c.1206T>G0.979
rpoC764578c.1209C>G0.979
rpoC764593c.1224C>T0.981
rpoC764605c.1236G>A0.981
rpoC764626c.1257C>T0.980
rpoC764650c.1281G>T0.978
rpoC764668c.1299C>T0.977
rpoC764686c.1317C>T0.980
rpoC764696c.1327C>T1.000
rpoC764746c.1377G>C0.957
rpoC764749c.1380G>C0.956
rpoC764752c.1383G>C0.955
rpoC764764c.1395T>C0.952
rpoC764782c.1413C>T0.944
rpoC764797c.1428G>C0.944
rpoC764803c.1434C>G0.947
rpoC764809c.1440C>T0.951
rpoC764815c.1446A>G0.953
rpoC764858c.1489T>C0.974
rpoC764884c.1515C>T0.950
rpoC764887c.1518G>C1.000
rpoC764888c.1519T>C1.000
rpoC764896c.1527C>T1.000
rpoC764902c.1533C>T1.000
rpoC764911c.1542A>G1.000
rpoC764923c.1554A>G1.000
rpoC764932c.1563C>G1.000
rpoC764948c.1579T>C1.000
rpoC764968c.1599T>C1.000
rpoC765007c.1638T>G1.000
rpoC765008c.1639T>C1.000
rpoC765013c.1644C>T1.000
rpoC765019c.1650A>G1.000
rpoC765040c.1671T>C1.000
rpoC765041c.1672T>C1.000
rpoC765047c.1678T>C1.000
rpoC765052c.1683C>G1.000
rpoC765053c.1684T>A1.000
rpoC765065c.1696C>T1.000
rpoC765073c.1704G>C1.000
rpoC765076c.1707A>G1.000
rpoC765079c.1710T>C1.000
rpoC765082c.1713G>C1.000
rpoC765089c.1720T>C1.000
rpoC765103c.1734G>A1.000
rpoC765121c.1752G>T1.000
rpoC765208c.1839T>C1.000
rpoC765223c.1854G>C1.000
rpoC765233p.Ala622Ser1.000
rpoC765247c.1878C>G1.000
rpoC765248c.1879T>C1.000
rpoC765251c.1882A>T1.000
rpoC765278c.1909C>T1.000
rpoC765283c.1914C>G1.000
rpoC765316c.1947G>A1.000
rpoC765319c.1950A>G1.000
rpoC765328p.His653Gln1.000
rpoC765330p.Ser654Asn1.000
rpoC765334c.1965C>T1.000
rpoC765343c.1974G>A1.000
rpoC765352c.1983G>C1.000
rpoC765367c.1998C>G1.000
rpoC765370c.2001G>C1.000
rpoC765383p.Met672Leu1.000
rpoC765391c.2022C>T1.000
rpoC765406c.2037G>T1.000
rpoC765409c.2040T>C1.000
rpoC765412c.2043T>C1.000
rpoC765421c.2052C>G1.000
rpoC765452p.Ala695Ser1.000
rpoC765466c.2097C>T1.000
rpoC765478c.2109T>C1.000
rpoC765493c.2124G>C1.000
rpoC765499c.2130C>G1.000
rpoC765508c.2139C>G1.000
rpoC765517c.2148C>G1.000
rpoC765529c.2160C>T1.000
rpoC765541c.2172C>G1.000
rpoC765553c.2184C>T1.000
rpoC765556c.2187G>C1.000
rpoC765562c.2193G>C1.000
rpoC765578c.2209C>T1.000
rpoC765622p.Glu751Asp0.974
rpoC765625c.2256C>T0.970
rpoC765628c.2259G>C0.971
rpoC765658c.2289C>T0.973
rpoC765700c.2331T>C0.974
rpoC765728p.Gln787Lys0.957
rpoC765734c.2365T>C0.952
rpoC765739c.2370G>C0.950
rpoC765752p.Asp795Ser0.940
rpoC765772c.2403C>G0.977
rpoC765784c.2415C>G0.952
rpoC765790c.2421C>T0.950
rpoC765793c.2424C>G0.951
rpoC765796c.2427C>T0.951
rpoC765811c.2442T>A0.933
rpoC765814c.2445A>G0.956
rpoC765826c.2457T>C0.925
rpoC765835c.2466C>T0.963
rpoC765883c.2514C>G0.982
rpoC765886c.2517C>G0.983
rpoC765892c.2523T>C0.984
rpoC765934c.2565C>T1.000
rpoC765952c.2583G>T1.000
rpoC765967c.2598C>T1.000
rpoC765982c.2613C>G1.000
rpoC765994c.2625A>T1.000
rpoC766012c.2643C>G1.000
rpoC766021c.2652G>C1.000
rpoC766036c.2667C>T1.000
rpoC766061p.Val898Ile1.000
rpoC766082p.Ala905Gln1.000
rpoC766093c.2724C>A1.000
rpoC766095p.Thr909Ser1.000
rpoC766105c.2736C>T1.000
rpoC766123c.2754C>A1.000
rpoC766129c.2760C>G1.000
rpoC766135c.2766G>A1.000
rpoC766141c.2772C>T1.000
rpoC766142c.2773C>T1.000
rpoC766147c.2778C>T1.000
rpoC766148p.Thr927Ala1.000
rpoC766168c.2799C>G0.627
rpoC766270c.2901G>C1.000
rpoC766273c.2904T>C1.000
rpoC766274p.Ala969Thr1.000
rpoC766280p.Ser971Gly1.000
rpoC766288c.2919C>G1.000
rpoC766309c.2940G>A1.000
rpoC766315c.2946C>G1.000
rpoC766321c.2952C>G1.000
rpoC766348c.2979A>G1.000
rpoC766369c.3000C>G1.000
rpoC766381c.3012C>T1.000
rpoC766384c.3015A>G1.000
rpoC766393c.3024C>G1.000
rpoC766402c.3033C>G1.000
rpoC766408c.3039C>T1.000
rpoC766426c.3057C>T1.000
rpoC766456c.3087C>G1.000
rpoC766486c.3117A>G1.000
rpoC766492c.3123T>C1.000
rpoC766504c.3135G>C1.000
rpoC766522c.3153C>G1.000
rpoC766528c.3159T>C1.000
rpoC766530p.Arg1054Gln1.000
rpoC766549c.3180G>C1.000
rpoC766573c.3204T>C0.979
rpoC766585c.3216T>C0.978
rpoC766594c.3225G>C0.977
rpoC766607p.Ile1080Leu0.977
rpoC766630c.3261G>T0.976
rpoC766660c.3291G>A1.000
rpoC766666c.3297C>G1.000
rpoC766672c.3303T>C1.000
rpoC766700c.3331C>T1.000
rpoC766726c.3357T>C1.000
rpoC766733c.3364C>T1.000
rpoC766738c.3369G>C1.000
rpoC766741c.3372G>C1.000
rpoC766750c.3381C>G1.000
rpoC766765c.3396A>C0.953
rpoC766774c.3405T>C0.956
rpoC766798c.3429C>G0.959
rpoC766801c.3432C>G0.957
rpoC766804c.3435A>G0.958
rpoC766843c.3474T>G0.959
rpoC766864c.3495G>C1.000
rpoC766876c.3507C>T1.000
rpoC766883p.Ser1172Ala1.000
rpoC766894c.3525T>C1.000
rpoC766895c.3526T>C1.000
rpoC766900c.3531T>C1.000
rpoC766903c.3534C>T1.000
rpoC766918c.3549C>T1.000
rpoC766933c.3564A>G1.000
rpoC766945c.3576A>G1.000
rpoC766963c.3594T>C1.000
rpoC766996c.3627C>G0.955
rpoC767002c.3633G>C0.953
rpoC767009c.3640T>A0.935
rpoC767014c.3645G>C0.935
rpoC767033c.3664T>A0.949
rpoC767059c.3690T>G0.944
rpoC767062c.3693C>A0.946
rpoC767098c.3729T>C0.979
rpoC767119c.3750A>G1.000
rpoC767134c.3765C>A1.000
rpoC767149c.3780C>T1.000
rpoC767158c.3789T>A1.000
rpoC767167c.3798C>G1.000
rpoC767180p.Ala1271Gln1.000
rpoC767191c.3822C>G1.000
rpoC767206c.3837C>G1.000
rpoC767209c.3840T>C1.000
rpoC767221c.3852C>G1.000
rpoC767230c.3861G>C1.000
rpoC767233c.3864T>C1.000
rpoC767263c.3894T>G1.000
rpoC767264p.Ala1299Gln1.000
rpoC767278c.3909T>C1.000
rpoC767281c.3912C>G1.000
rpoC767284c.3915C>T1.000
rpsL781353c.-207T>C0.882
rpsL781358c.-202G>C0.882
rpsL781372c.-188T>A0.929
rpsL781571c.12C>T0.930
rpsL781595c.36T>C0.917
rpsL781598c.39G>C0.917
rpsL781605p.Ile16Val0.939
rpsL781608p.Ser17Ala0.939
rpsL781616c.57C>T0.958
rpsL781628c.69T>C0.980
rpsL781655c.96T>C0.981
rpsL781658c.99A>G1.000
rpsL781682c.123T>C1.000
rpsL781715c.156T>C1.000
rpsL781718c.159C>G1.000
rpsL781721c.162C>T0.985
rpsL781728c.169T>C0.985
rpsL781736c.177T>C0.985
rpsL781751c.192G>C0.983
rpsL781754c.195G>C0.984
rpsL781760c.201T>C0.984
rpsL781766c.207C>T0.983
rpsL781772c.213C>G0.983
rpsL781781c.222G>A0.986
rpsL781793c.234G>C0.985
rpsL781808c.249C>T0.984
rpsL781832c.273T>G0.986
rpsL781835c.276T>C0.985
rpsL781859c.300T>G0.982
rpsL781865c.306G>C0.981
rpsL781868c.309T>C0.981
rpsL781871c.312G>C1.000
rpsL781883c.324G>A1.000
rpsL781886c.327C>T1.000
rpsL781892c.333A>G1.000
rpsL781898c.339A>T1.000
rpsL781916c.357T>C1.000
rpsL781929p.Gly124Ser0.980
rpsL781933374G>A0.980
rplC800801c.-8A>C0.923
rplC800806c.-3G>T0.923
rplC800814c.6A>G0.923
rplC800815c.7C>A0.923
rplC800820c.12G>A0.929
rplC800829c.21C>G0.982
rplC800844c.36T>C0.984
rplC800856c.48A>G0.982
rplC800865c.57A>G0.977
rplC800867p.Ser20Asn0.977
rplC800872c.64A>C0.977
rplC800877c.69A>C0.977
rplC800880c.72A>G0.977
rplC800901c.93C>G1.000
rplC800910c.102C>T1.000
rplC800913c.105G>A1.000
rplC800916c.108A>G1.000
rplC800919c.111C>G1.000
rplC800931c.123G>C1.000
rplC800934c.126C>G1.000
rplC800937c.129A>G1.000
rplC800946c.138T>A1.000
rplC800949c.141T>C1.000
rplC800962p.Leu52Val1.000
rplC800970c.162T>C1.000
rplC801180c.372C>G0.364
rplC801195c.387G>C0.440
rplC801201c.393C>T1.000
rplC801207c.399C>T1.000
rplC801210c.402T>C1.000
rplC801222c.414T>C1.000
rplC801228c.420T>C1.000
rplC801231c.423C>T1.000
rplC801246c.438C>T0.939
rplC801255c.447C>A0.943
rplC801267c.459A>C0.943
rplC801270c.462T>C0.943
rplC801273c.465C>G0.943
rplC801279c.471G>C0.949
rplC801285c.477G>A0.949
rplC801309c.501C>G1.000
rplC801312c.504G>C1.000
rplC801324c.516T>C1.000
rplC801330c.522G>T1.000
rplC801333c.525G>C1.000
rplC801339c.531T>G1.000
rplC801341p.Leu178Gln1.000
rplC801348c.540T>G1.000
rplC801349p.Leu181Val1.000
rplC801357c.549T>C1.000
rplC801372c.564G>A1.000
rplC801385c.577C>T1.000
rplC801402c.594T>C1.000
rplC801405c.597T>C1.000
rplC801408c.600C>A0.975
rplC801423c.615G>C1.000
rplC801426c.618C>T1.000
rplC801427p.Met207Val1.000
rplC801437p.Ser210Thr1.000
rplC801461653G>A1.000
embR1416247c.1101G>A0.833
embR1416256p.Asn364Lys0.846
embR1416259c.1089C>G0.846
embR1416262c.1086C>G0.846
embR1416266p.Val361Ala0.846
embR1416274c.1074G>C0.913
embR1416280c.1068T>C0.917
embR1416285p.Glu355Gln0.926
embR1416289c.1059C>T0.933
embR1416301c.1047G>T0.943
embR1416310c.1038C>G0.955
embR1416313c.1035T>C0.955
embR1416316c.1032G>C0.955
embR1416330p.Val340Ile0.955
embR1416332p.Tyr339Phe0.955
embR1416335p.Asn338Ser0.957
embR1416343c.1005C>G0.961
embR1416364c.984G>A0.983
embR1416386p.Asp321Ala0.977
embR1416388c.960T>C0.951
embR1416393p.Val319Ile0.951
embR1416880c.468G>A1.000
embR1416886c.462G>A0.677
embR1416892c.456G>A0.697
embR1416895p.Asp151Glu0.730
embR1416910c.438A>G1.000
embR1416921p.Arg143Ala1.000
embR1416924c.424A>G1.000
embR1416930p.Ala140Thr1.000
embR1416936c.412G>A1.000
embR1416940c.408G>A1.000
rrs1471923r.78t>c0.964
rrs1471925r.80t>c0.964
rrs1471932r.87a>g0.966
rrs1471934r.89a>g0.966
rrs1471970r.125g>a0.969
rrs1472030r.185g>t0.960
rrs1472031r.186g>t0.960
rrs1472033r.188a>g0.960
rrs1472034r.189t>c0.923
rrs1472040r.195t>c0.966
rrs1472053r.208agc>a0.969
rrs1472061r.216a>t0.969
rrs1472075r.230a>g0.986
rrs1472286r.441c>g1.000
rrs1472289r.444t>g1.000
rrs1472290r.445c>g1.000
rrs1472313r.468g>a1.000
rrs1472315r.470t>g1.000
rrs1472324r.479g>c1.000
rrs1472325r.480g>c1.000
rrs1472328r.483g>c1.000
rrs1472460r.615t>c1.000
rrs1472461r.616g>c1.000
rrs1472463r.618g>c1.000
rrs1472464r.619a>g1.000
rrs1472489r.644a>g1.000
rrs1472686r.841g>a0.966
rrs1472847r.1002g>c1.000
rrs1472848r.1003t>g1.000
rrs1472849r.1004c>g1.000
rrs1472850r.1005t>c1.000
rrs1472857r.1012a>g1.000
rrs1472858r.1013g>t1.000
rrs1472859r.1014g>c1.000
rrs1472860r.1015c>g1.000
rrs1472969r.1124a>g0.978
rrs1472970r.1125c>g0.978
rrs1472977r.1132g>c0.977
rrs1472978r.1133t>c0.977
rrs1473105r.1260g>a1.000
rrs1473120r.1275c>ct1.000
rrs1473123r.1278a>t1.000
rrs1473288r.1443c>t0.964
rrs1473290r.1445c>t0.964
rrs1473291r.1446g>t0.964
rrl1473396c.-262A>AG0.647
rrl1473401c.-257G>A1.000
rrl1473403c.-255C>T1.000
rrl1473408c.-250C>T1.000
rrl1473417c.-241C>T1.000
rrl1473420c.-238A>G1.000
rrl1473421c.-237G>A1.000
rrl1473437c.-221T>C1.000
rrl1473449c.-209G>A1.000
rrl1473454c.-204A>G1.000
rrl1473569c.-89A>T1.000
rrl1473571c.-87C>T1.000
rrl1473592c.-66C>CTA0.261
rrl1473659r.2t>c1.000
rrl1473668r.11c>t1.000
rrl1473676r.19g>a1.000
rrl1473758r.101g>t1.000
rrl1473797r.140g>t1.000
rrl1473806r.149c>t1.000
rrl1473813r.156c>t1.000
rrl1473831r.174g>a1.000
rrl1473876r.219g>a1.000
rrl1473887r.230t>a1.000
rrl1473888r.231t>a1.000
rrl1473899r.242a>t1.000
rrl1473918r.261c>t1.000
rrl1473924r.267a>t0.143
rrl1473924r.267a>at1.000
rrl1473943r.286g>c1.000
rrl1473945r.288t>a1.000
rrl1473946r.289a>t1.000
rrl1473981r.324g>t1.000
rrl1473986r.329t>c1.000
rrl1473994r.337c>t1.000
rrl1473995r.338g>t1.000
rrl1474001r.344c>t1.000
rrl1474009r.352a>g1.000
rrl1474011r.354g>a1.000
rrl1474018r.361g>a1.000
rrl1474030r.373g>a1.000
rrl1474061r.404t>c1.000
rrl1474089r.432c>t1.000
rrl1474093r.436g>a1.000
rrl1474100r.443c>t1.000
rrl1474103r.446a>t1.000
rrl1474105r.448t>g1.000
rrl1474110r.453a>c1.000
rrl1474111r.454t>c1.000
rrl1474130r.473c>t1.000
rrl1474140r.483c>t1.000
rrl1474151r.494c>t1.000
rrl1474181r.524c>t1.000
rrl1474249r.592g>t1.000
rrl1474291r.634tttcctctccggagga>t1.000
rrl1474308r.651g>t1.000
rrl1474310r.653t>g1.000
rrl1474433r.776g>t1.000
rrl1474447r.790g>a1.000
rrl1474627r.970g>a0.987
rrl1474632r.975g>t0.987
rrl1474639r.982g>a0.986
rrl1474717r.1060a>t0.951
rrl1474753r.1096a>g0.966
rrl1474760r.1103a>g0.967
rrl1474783r.1126g>a0.954
rrl1474794r.1137c>t0.959
rrl1474812r.1155g>a0.965
rrl1474831r.1174a>g0.966
rrl1474945r.1288c>t1.000
rrl1474991r.1334t>c1.000
rrl1474995r.1338t>g1.000
rrl1475005r.1348c>t1.000
rrl1475006r.1349a>g1.000
rrl1475007r.1350c>t1.000
rrl1475013r.1356g>a1.000
rrl1475018r.1361g>a1.000
rrl1475027r.1370g>t1.000
rrl1475028r.1371g>t1.000
rrl1475061r.1404c>t1.000
rrl1475199r.1542g>a0.900
rrl1475202r.1545g>a0.900
rrl1475313r.1656g>a0.983
rrl1475315r.1658a>t0.984
rrl1475355r.1698c>t0.986
rrl1475369r.1712g>t0.986
rrl1475404r.1747a>g0.979
rrl1475405r.1748a>t0.979
rrl1475419r.1762c>t0.984
rrl1475429r.1772g>a0.985
rrl1475453r.1796t>a0.983
rrl1475480r.1823a>g0.979
rrl1475483r.1826c>t0.939
rrl1475487r.1830c>t0.936
rrl1475505r.1848g>a0.964
rrl1475526r.1869c>a0.964
rrl1475599r.1942a>g0.956
rrl1475604r.1947a>c0.953
rrl1475605r.1948a>t0.953
rrl1475608r.1951t>c0.911
rrl1475617r.1960c>g1.000
rrl1475625r.1968g>c1.000
rrl1475637r.1980t>a1.000
rrl1475642r.1985t>c1.000
rrl1475657r.2000a>g1.000
rrl1475659r.2002g>a1.000
rrl1475760r.2103c>t1.000
rrl1475763r.2106c>t1.000
rrl1475881r.2224t>c1.000
rrl1475988r.2331a>g1.000
rrl1475999r.2342g>t1.000
rrl1476030r.2373a>g1.000
rrl1476032r.2375c>t1.000
rrl1476033r.2376t>c1.000
rrl1476034r.2377c>g1.000
rrl1476045r.2388g>c1.000
rrl1476047r.2390g>a1.000
rrl1476049r.2392c>t1.000
rrl1476077r.2420t>c1.000
rrl1476086r.2429g>a1.000
rrl1476089r.2432t>c1.000
rrl1476095r.2438c>t1.000
rrl1476104r.2447tg>t1.000
rrl1476106r.2449a>t1.000
rrl1476115r.2458t>c0.972
rrl1476214r.2557g>t0.983
rrl1476215r.2558c>t0.982
rrl1476251r.2594t>c0.959
rrl1476580r.2923g>a0.982
rrl1476597r.2940g>a0.980
rrl1476619r.2962c>t1.000
rrl1476628r.2971t>a1.000
rrl1476689r.3032a>t1.000
rrl1476690r.3033c>t1.000
rrl1476693r.3036g>a1.000
rrl1476695r.3038t>a1.000
rrl1476716r.3059a>c1.000
rrl1476723r.3066t>a1.000
rrl1476725r.3068c>t1.000
rrl1476726r.3069a>g1.000
rrl1476732r.3075t>c1.000
rrl1476750r.3093t>c0.976
rrl1476755r.3098g>a0.952
rrl1476759r.3102t>c0.913
rrl1476770r.3113t>c0.889
rrl1476771r.3114g>a0.889
fabG11673475c.36A>C1.000
fabG11673499c.60T>C1.000
fabG11673505c.66A>T1.000
fabG11673517c.78G>C1.000
fabG11673524c.85C>T1.000
fabG11673535c.96A>G1.000
fabG11673547c.108T>C1.000
fabG11673565c.126G>C1.000
fabG11673580c.141T>C1.000
fabG11673589c.150A>G1.000
fabG11673595c.156A>C1.000
fabG11673596p.Lys53Glu1.000
fabG11673657p.Thr73Lys1.000
fabG11673660p.Ala74Glu1.000
fabG11673664c.225A>C1.000
fabG11673667c.228A>G1.000
fabG11673679c.240T>C1.000
fabG11673697c.258G>C1.000
fabG11673710p.Leu91Ile1.000
fabG11673716p.Ala93Lys1.000
fabG11673724c.285A>C1.000
fabG11673730c.291C>G1.000
fabG11673733p.Met98Ile1.000
fabG11673745c.306G>A1.000
fabG11673748c.309A>G1.000
fabG11673749p.Lys104Arg1.000
fabG11673758p.Lys107Glu1.000
fabG11673784c.345G>C1.000
fabG11673799c.360T>C0.679
fabG11673802c.363A>G0.670
fabG11673808c.369A>G0.660
fabG11673829p.Asn130Lys1.000
fabG11673830p.Lys131Arg1.000
fabG11673838c.399T>C1.000
fabG11673841c.402A>G1.000
fabG11673844p.Met135Ile1.000
fabG11673847c.408A>C1.000
fabG11673853c.414A>C1.000
fabG11673856c.417T>G1.000
fabG11673865c.426C>G1.000
fabG11673870p.Ser144Met1.000
fabG11673877c.438C>T1.000
fabG11673901c.462A>C1.000
fabG11673904c.465C>G1.000
fabG11673905p.Ser156Ala1.000
fabG11673916c.477A>C1.000
fabG11673917p.Val160Leu1.000
fabG11673922c.483T>C1.000
fabG11673925c.486C>G1.000
fabG11673941p.Ala168Ser1.000
fabG11673946c.507C>G1.000
fabG11673955c.516G>C1.000
fabG11673961c.522A>C1.000
fabG11673962p.Asn175Gly1.000
fabG11673973c.534G>C1.000
fabG11673976c.537T>C1.000
fabG11673982c.543G>T1.000
fabG11673988c.549G>C1.000
fabG11674006p.Asp189Glu1.000
fabG11674015c.576C>G1.000
inhA1674199c.-3C>G1.000
inhA1674205p.Thr2Ala1.000
inhA1674216c.15G>C1.000
inhA1674231c.30T>C1.000
inhA1674237c.36T>C1.000
inhA1674239p.Ser13Thr1.000
inhA1674243c.42A>G1.000
inhA1674258c.57G>C1.000
inhA1674303c.102C>G1.000
inhA1674307c.106C>T1.000
inhA1674315c.114C>G1.000
inhA1674321c.120G>A1.000
inhA1674336c.135G>A1.000
inhA1674342c.141T>C1.000
inhA1674352p.Thr51Ala1.000
inhA1674357c.156C>T1.000
inhA1674367p.Ala56Gln1.000
inhA1674382p.Leu61Ile1.000
inhA1674463p.Leu88Ile1.000
inhA1674471c.270G>C1.000
inhA1674480c.279T>C1.000
inhA1674489c.288G>T1.000
inhA1674507c.306G>A1.000
inhA1674534c.333G>C1.000
inhA1674537c.336C>A1.000
inhA1674540c.339C>T1.000
inhA1674542p.Ala114Glu1.000
inhA1674549c.348G>C1.000
inhA1674555c.354G>A1.000
inhA1674561c.360C>T1.000
inhA1674582c.381T>C1.000
inhA1674585c.384T>C1.000
inhA1674588c.387G>A1.000
inhA1674589p.Met130Leu1.000
inhA1674601p.Leu134Val1.000
inhA1674618c.417C>T1.000
inhA1674624c.423A>T1.000
inhA1674627c.426T>C1.000
inhA1674655c.454A>T1.000
inhA1674669c.468G>C1.000
inhA1674687c.486G>A1.000
inhA1674690c.489C>G1.000
inhA1674693c.492C>T1.000
inhA1674696c.495G>A1.000
inhA1674703c.502T>C1.000
inhA1674718c.517A>C1.000
inhA1674729c.528G>A1.000
inhA1674745p.Tyr182Ala1.000
inhA1674756c.555T>C1.000
inhA1674759c.558G>C1.000
inhA1674765c.564C>T0.977
inhA1674774c.573A>C1.000
inhA1674777c.576C>A1.000
inhA1674780c.579T>G1.000
inhA1674792c.591G>C1.000
inhA1674801c.600T>C1.000
inhA1674820c.619C>T1.000
inhA1674828c.627G>A1.000
inhA1674846p.Ile215Met1.000
inhA1674870c.669T>C1.000
inhA1674876c.675C>G0.985
inhA1674879c.678T>C1.000
inhA1674888c.687C>T1.000
inhA1674904p.Ala235Pro1.000
inhA1674909c.708G>C1.000
inhA1674915c.714C>G1.000
inhA1674939c.738G>A0.984
inhA1674942c.741T>C0.985
inhA1674966c.765T>C0.968
inhA1674967p.Asp256Thr0.967
inhA1674993c.792G>C0.864
inhA1674994p.His265Ser0.864
inhA1675006c.805C>T0.927
rpsA1833517c.-25AC>A0.976
rpsA1833532c.-10A>C1.000
rpsA1833568c.27G>C1.000
rpsA1833589c.48A>T1.000
rpsA1833595c.54T>C1.000
rpsA1833613c.72C>A1.000
rpsA1833619c.78A>C1.000
rpsA1833661c.120A>G1.000
rpsA1833667c.126C>G1.000
rpsA1833703c.162C>T1.000
rpsA1833724c.183C>G1.000
rpsA1833727c.186G>C1.000
rpsA1833745c.204G>C1.000
rpsA1833760c.219C>T1.000
rpsA1833790c.249T>C0.968
rpsA1833793c.252C>T1.000
rpsA1833802c.261A>G1.000
rpsA1833808c.267G>C1.000
rpsA1833811c.270G>T1.000
rpsA1833832c.291G>A1.000
rpsA1833838c.297G>C1.000
rpsA1833841c.300C>G1.000
rpsA1833847c.306C>G1.000
rpsA1833856c.315A>G1.000
rpsA1833859c.318C>T1.000
rpsA1833874c.333T>C1.000
rpsA1833895c.354G>C1.000
rpsA1833928c.387G>C1.000
rpsA1833949c.408T>C0.953
rpsA1833970c.429G>A1.000
rpsA1833979c.438T>C1.000
rpsA1834000c.459G>C1.000
rpsA1834012c.471G>A1.000
rpsA1834015c.474G>C1.000
rpsA1834021c.480C>T1.000
rpsA1834102c.561T>C1.000
rpsA1834105c.564C>T1.000
rpsA1834150c.609G>C1.000
rpsA1834153c.612T>C1.000
rpsA1834154p.Asn205Gln1.000
rpsA1834157c.616T>C1.000
rpsA1834162c.621A>G1.000
rpsA1834165c.624A>G1.000
rpsA1834177c.636A>C1.000
rpsA1834186c.645C>G1.000
rpsA1834189c.648G>C1.000
rpsA1834195c.654G>C1.000
rpsA1834222c.681T>C0.714
rpsA1834225c.684C>G1.000
rpsA1834231c.690T>G1.000
rpsA1834249c.708T>C1.000
rpsA1834261c.720A>G1.000
rpsA1834264c.723G>C1.000
rpsA1834297c.756C>T1.000
rpsA1834303c.762T>G1.000
rpsA1834306c.765T>C1.000
rpsA1834336c.795C>G1.000
rpsA1834348c.807T>C1.000
rpsA1834357c.816T>C1.000
rpsA1834366c.825A>G1.000
rpsA1834375c.834G>A1.000
rpsA1834396c.855G>T1.000
rpsA1834411c.870T>C1.000
rpsA1834423c.882G>T1.000
rpsA1834451c.910T>C0.984
rpsA1834456c.915T>G0.985
rpsA1834465c.924T>C0.984
rpsA1834468c.927A>G0.985
rpsA1834477c.936C>T0.985
rpsA1834489c.948T>C0.985
rpsA1834519c.978G>C0.985
rpsA1834546c.1005T>C0.988
rpsA1834555c.1014T>G0.988
rpsA1834603c.1062G>A0.988
rpsA1834609c.1068T>C0.987
rpsA1834612c.1071G>A0.928
rpsA1834633c.1092A>G0.986
rpsA1834639c.1098T>C0.986
rpsA1834654c.1113G>A0.986
rpsA1834690c.1149T>C0.986
rpsA1834699p.Glu386Asp1.000
rpsA1834732c.1191T>C0.431
rpsA1834747c.1206A>G1.000
rpsA1834751p.Leu404Met1.000
rpsA1834756c.1215G>A1.000
rpsA1834759c.1218A>C1.000
rpsA1834765p.Glu408Asp1.000
rpsA1834766p.Lys409Ala1.000
rpsA1834775p.Ala412Gln1.000
rpsA1834780c.1239A>G1.000
rpsA1834789c.1248T>C1.000
rpsA1834792c.1251G>C1.000
rpsA1834852c.1311C>G1.000
rpsA1834858c.1317G>A1.000
tlyA1917940p.Val1Met1.000
tlyA1917945c.6A>G1.000
tlyA1917948c.9A>G1.000
tlyA1917951c.12T>C1.000
tlyA1917957c.18C>T1.000
tlyA1917972c.33A>G1.000
tlyA1918029c.90C>G1.000
tlyA1918047c.108G>C1.000
tlyA1918048p.Leu37Met1.000
tlyA1918377c.438T>G0.944
tlyA1918380c.441C>T0.944
tlyA1918390p.Val151Ile0.943
tlyA1918395c.456G>C0.946
tlyA1918410c.471C>T0.952
tlyA1918420p.Ala161Ser1.000
tlyA1918442p.Val168Ala1.000
tlyA1918446c.507A>T1.000
tlyA1918452c.513T>G0.963
tlyA1918454p.Ser172Trp0.962
tlyA1918457p.Arg173Pro0.962
tlyA1918460p.Asp174Gly0.963
tlyA1918464c.525C>G0.964
tlyA1918476c.537A>C0.978
tlyA1918477p.Leu180Met0.978
katG2154858c.1254T>G1.000
katG2154866p.Ile416Leu1.000
katG2154892p.Glu407Ala1.000
katG2155017c.1095C>G1.000
katG2155026c.1086G>C1.000
katG2155047c.1065G>C1.000
katG2155054p.Tyr353Phe1.000
katG2155056c.1056T>C1.000
katG2155062c.1050A>G1.000
katG2155068c.1044A>C1.000
katG2155071c.1041A>C1.000
katG2155080c.1032C>G0.604
katG2155083c.1029C>G0.600
katG2155086c.1026C>T0.596
katG2155119c.993A>G1.000
katG2155131c.981T>C1.000
katG2155134c.978C>G1.000
katG2155140c.972G>C1.000
katG2155145p.Asn323Pro1.000
katG2155152c.960T>C1.000
katG2155155c.957G>C1.000
katG2155185c.927A>G1.000
katG2155189p.Thr308Lys1.000
katG2155191c.921T>G1.000
katG2155203c.909C>G1.000
katG2155320c.792C>G1.000
katG2155323c.789C>G1.000
katG2155326c.786T>C1.000
katG2155329c.783T>C1.000
katG2155333p.Val260Glu1.000
katG2155344c.768G>C1.000
katG2155350c.762G>C1.000
katG2155355p.Arg253Gly1.000
katG2155356c.756A>G1.000
katG2155566c.546C>G1.000
katG2155572c.540C>T1.000
katG2155581c.531G>T1.000
katG2155587c.525C>G1.000
katG2155590c.522T>C1.000
katG2155614c.498A>C1.000
katG2155619p.Ile165Leu1.000
katG2155626c.486C>G1.000
katG2155632c.480T>C1.000
katG2155637p.Leu159Ile1.000
katG2155641p.Lys157Asn1.000
katG2155656c.456C>T1.000
katG2155661p.Val151Ile1.000
katG2155680c.432C>G1.000
katG2155691c.421A>G1.000
katG2155695c.417G>C1.000
katG2155704c.408G>C1.000
katG2155716c.396A>G1.000
katG2155728c.384C>G1.000
kasA2518132c.18C>T1.000
kasA2518138c.24T>C1.000
kasA2518146p.Phe11Tyr1.000
kasA2518152p.Ser13Asn1.000
kasA2518162c.48G>A1.000
kasA2518169p.Val19Leu1.000
kasA2518172p.Thr20Ala1.000
kasA2518190p.Ser26Ala1.000
kasA2518199p.Ile29Val1.000
kasA2518219c.105T>C1.000
kasA2518220c.106C>T1.000
kasA2518245p.His44Arg1.000
kasA2518248p.Ala45Val1.000
kasA2518261p.Glu49Asp1.000
kasA2518273c.159G>A1.000
kasA2518279p.Asp55Glu1.000
kasA2518282c.168A>G1.000
kasA2518283p.Ala57Pro1.000
kasA2518289p.Lys59Gln1.000
kasA2518297c.183C>T1.000
kasA2518300c.186T>A1.000
kasA2518312p.Asp66Glu1.000
kasA2518316p.Val68Ile1.000
kasA2518321c.207C>T1.000
kasA2518323p.Ser70Asn1.000
kasA2518336c.222A>G1.000
kasA2518339c.225C>G1.000
kasA2518342c.228C>T1.000
kasA2518343p.Met77Leu1.000
kasA2518351c.237C>G1.000
kasA2518447c.333T>C1.000
kasA2518450c.336C>T1.000
kasA2518459c.345T>C1.000
kasA2518462c.348A>G1.000
kasA2518468c.354A>C1.000
kasA2518475c.361A>C1.000
kasA2518480c.366T>C1.000
kasA2518492c.378C>T1.000
kasA2518504c.390T>C1.000
kasA2518506p.Ala131Glu1.000
kasA2518519c.405G>C0.980
kasA2518528c.414C>G0.981
kasA2518534c.420G>C0.982
kasA2518561c.447T>C0.892
kasA2518567c.453G>C0.800
kasA2518570c.456G>C0.800
kasA2518573c.459G>C0.800
kasA2518574p.Ile154Val0.800
kasA2518582c.468G>C0.966
kasA2518583p.Gln157Glu0.966
kasA2518594c.480C>T0.976
kasA2518597c.483C>G0.978
kasA2518606c.492G>C0.958
kasA2518609p.Met165Ile0.941
kasA2518636c.522C>A0.943
kasA2518639c.525G>C0.939
kasA2518642c.528A>G0.939
kasA2518645c.531G>C0.939
kasA2518651c.537C>G0.943
kasA2518657c.543G>C0.943
kasA2518663c.549T>C0.943
kasA2518672c.558G>C0.943
kasA2518678c.564C>T0.864
kasA2518681c.567C>T0.882
kasA2518684c.570C>G0.875
kasA2518687p.Asp191Glu0.875
kasA2518693c.579C>G0.900
kasA2518702c.588C>T0.909
kasA2518711c.597A>G0.864
kasA2518714c.600A>C0.913
kasA2518717c.603C>G0.923
kasA2518723c.609G>A0.926
kasA2518735c.621C>T0.931
kasA2518747c.633C>G0.933
kasA2518768c.654C>G1.000
kasA2518783c.669T>C1.000
kasA2518789c.675G>C1.000
kasA2518795c.681C>A1.000
kasA2518798c.684G>C1.000
kasA2518825c.711T>C0.868
kasA2518840c.726C>G0.840
kasA2518843c.729T>G1.000
kasA2518846c.732G>C0.872
kasA2518855c.741C>G1.000
kasA2518864c.750G>C1.000
kasA2518879c.765A>G1.000
kasA2518885c.771T>C0.917
kasA2518894c.780G>A1.000
kasA2518898c.784T>C1.000
kasA2518906c.792A>G1.000
kasA2518907c.793T>C1.000
kasA2518910p.Leu266Met1.000
kasA2518915c.801T>C1.000
kasA2518930c.816G>C1.000
kasA2518939c.825T>C1.000
kasA2518942c.828T>C1.000
kasA2519072p.Ala320Thr1.000
kasA2519077c.963G>A1.000
kasA2519095c.981C>G1.000
kasA2519098c.984C>T1.000
kasA2519104c.990T>A1.000
kasA2519107c.993T>C1.000
kasA2519110p.Asp332Glu1.000
kasA2519112p.Gln333Arg1.000
kasA2519119c.1005G>C1.000
kasA2519134c.1020G>A1.000
kasA2519137c.1023T>G1.000
kasA2519140c.1026G>A1.000
kasA2519146c.1032C>A1.000
kasA2519152c.1038G>C1.000
kasA2519161c.1047G>A1.000
kasA2519167c.1053T>G1.000
kasA2519194c.1080G>T1.000
kasA2519195p.Thr361Ser1.000
kasA2519203c.1089C>G0.600
kasA2519206c.1092C>T0.600
kasA2519209c.1095C>T0.615
kasA2519215c.1101C>T0.667
kasA2519227c.1113G>C1.000
kasA2519236c.1122G>A1.000
kasA2519239c.1125A>C1.000
kasA2519257c.1143C>T1.000
kasA2519258c.1144C>T1.000
kasA2519263c.1149C>T1.000
kasA2519269c.1155C>T1.000
kasA2519272c.1158C>G1.000
kasA2519273p.Gly387Ser1.000
kasA2519278c.1164A>G1.000
kasA2519281c.1167G>T1.000
kasA2519287c.1173T>C1.000
kasA2519293c.1179T>C1.000
kasA2519295p.Tyr394Phe0.171
kasA2519305c.1191A>G1.000
kasA2519306p.Val398Ile1.000
kasA2519317c.1203G>A0.330
kasA2519338c.1224T>C1.000
kasA2519344c.1230G>C1.000
kasA2519347c.1233T>C1.000
kasA2519365r.1251a>ag1.000
ahpC2726591c.399C>G1.000
ahpC2726600c.408T>C1.000
ahpC2726627c.435G>A1.000
ahpC2726645c.453C>G1.000
ahpC2726654c.462G>C1.000
ahpC2726657c.465A>G1.000
ahpC2726660c.468C>T1.000
ahpC2726669c.477T>C1.000
ahpC2726675c.483A>G1.000
ahpC2726681c.489A>G1.000
ahpC2726687c.495C>G1.000
ahpC2726690c.498C>T1.000
ahpC2726693c.501C>T1.000
ahpC2726696c.504C>G1.000
ahpC2726699c.507G>A1.000
ahpC2726708c.516G>A1.000
ahpC2726717c.525A>C1.000
folC2747023c.576G>C1.000
folC2747032c.567T>C1.000
folC2747047c.552G>A1.000
folC2747053c.546G>A1.000
folC2747062c.537T>A1.000
folC2747086c.513T>G1.000
folC2747089c.510C>G1.000
folC2747092p.Asp169Glu1.000
folC2747098c.501G>C1.000
folC2747107c.492C>G1.000
folC2747110c.489A>G1.000
folC2747113c.486G>C1.000
folC2747133p.Thr156Val0.986
folC2747134c.465G>C0.986
folC2747137c.462C>G0.987
folC2747161c.438G>A0.985
thyX3067295c.651G>A1.000
thyX3067301c.645G>A1.000
thyX3067316c.630T>G1.000
thyX3067319c.627C>A1.000
thyX3067325c.621T>C1.000
thyX3067337c.609G>A1.000
thyX3067340c.606C>T1.000
thyX3067349c.597C>G1.000
thyX3067355c.591T>C1.000
thyX3067358c.588G>A1.000
thyX3067379c.567G>A0.565
thyX3067385c.561G>C0.552
thyX3067394c.552C>G0.538
thyX3067400c.546G>C1.000
thyX3067406c.540T>C1.000
thyX3067418c.528G>C1.000
thyX3067427c.519C>G1.000
thyX3067430c.516G>A1.000
thyX3067439c.507T>C1.000
thyX3067442c.504G>T1.000
thyX3067445c.501G>C1.000
thyX3067448c.498C>T1.000
thyX3067454c.492G>A1.000
thyX3067457c.489G>C1.000
thyX3067465p.Ile161Val1.000
thyX3067498c.448G>A0.843
thyX3067634c.312G>C1.000
thyX3067652c.294A>G1.000
thyX3067661c.285G>T1.000
thyX3067676c.270G>C1.000
thyX3067680p.Cys89Leu1.000
thyX3067685c.261T>C1.000
thyX3067693p.Ile85Val1.000
thyX3067694c.252C>G1.000
thyX3067718c.228G>C1.000
thyX3067727c.219T>G1.000
thyX3067739c.207A>G1.000
thyX3067742c.204T>G1.000
thyX3067762p.Arg62Lys1.000
thyX3067765p.Leu61Ile1.000
thyX3067781c.165G>C1.000
thyX3067793c.153A>G1.000
thyX3067802c.144G>C1.000
thyX3067814c.132A>G1.000
thyX3067817c.129G>A1.000
thyX3067841c.105C>A1.000
thyX3067849p.Pro33Ser1.000
thyX3067850c.96T>C1.000
thyX3067858p.Asp30Gln1.000
thyX3067869p.Thr26Ser1.000
thyX3067877c.69C>G1.000
thyX3067886c.60T>C1.000
thyX3067889c.57G>C1.000
thyX3067894c.52A>G1.000
thyX3067898p.Asp16Glu1.000
thyX3067901c.45G>C1.000
thyX3067935p.Thr4Ile1.000
thyX3067937c.9C>T1.000
thyX3067952c.-7G>A1.000
thyA3073686c.786C>A1.000
thyA3073692c.780T>G1.000
thyA3073695c.777A>C1.000
thyA3073710c.762A>G1.000
thyA3073722c.750G>A1.000
thyA3073728c.744C>G1.000
thyA3073731c.741A>G1.000
thyA3073736p.Ile246Val1.000
thyA3073743c.729A>G1.000
thyA3073752p.Glu240Asp1.000
thyA3073761c.711T>C1.000
thyA3073772p.Asp234His1.000
thyA3073776c.696T>A1.000
thyA3073781p.Leu231Phe1.000
thyA3073782c.690T>G1.000
thyA3073787p.Lys229Glu1.000
thyA3073794c.678T>C1.000
thyA3073820p.Leu218Ile1.000
thyA3073824c.648T>G1.000
thyA3073827c.645T>C1.000
thyA3073830p.Glu214Asp1.000
thyA3073836c.636G>A1.000
thyA3073839c.633A>G1.000
thyA3073854c.618G>A1.000
thyA3073863c.609A>G1.000
thyA3073889p.Ser195Asp1.000
thyA3073892c.580A>G1.000
thyA3073905c.567G>C1.000
thyA3073925c.547A>G1.000
thyA3073929c.543A>G1.000
thyA3073944c.528G>A1.000
thyA3073953c.519A>G1.000
thyA3073956c.516C>G1.000
thyA3073959c.513A>G1.000
thyA3073968c.504G>C1.000
thyA3073977c.495T>C1.000
thyA3073989c.483A>G1.000
thyA3074001c.471G>C1.000
thyA3074004c.468A>G1.000
thyA3074037c.435G>C1.000
thyA3074053p.Arg140Gln1.000
thyA3074057p.Glu139Pro1.000
thyA3074070c.402G>A1.000
thyA3074076c.396G>C1.000
thyA3074085c.387G>A1.000
thyA3074089p.Ile128Asn1.000
thyA3074244c.228T>G1.000
thyA3074250c.222C>T1.000
thyA3074256c.216C>T1.000
thyA3074267p.Ile69Val1.000
thyA3074268c.204A>G1.000
thyA3074274c.198A>G1.000
thyA3074280c.192G>A1.000
thyA3074297c.175G>A1.000
thyA3074301c.171G>A1.000
thyA3074305p.Ala56Val1.000
thyA3074307c.165T>C1.000
thyA3074313c.159T>C1.000
thyA3074316p.Phe52Leu1.000
thyA3074322c.150G>C1.000
thyA3074325c.147T>C1.000
thyA3074334c.138A>G1.000
thyA3074337c.135G>C1.000
thyA3074360c.112A>G1.000
thyA3074361c.111A>G1.000
thyA3074364c.108A>G1.000
thyA3074372p.Met34Leu0.969
thyA3074373c.99C>T0.969
ald3087629c.810C>T1.000
ald3087638c.819C>T1.000
ald3087641c.822T>C1.000
ald3087647c.828A>G1.000
ald3087649p.Gly277Asp1.000
ald3087653c.834A>G1.000
ald3087659c.840G>C1.000
ald3087672p.His285Asp1.000
ald3087686c.867C>G1.000
ald3087692c.873C>T1.000
ald3087699p.Leu294Met1.000
ald3087727p.Ala303Gly1.000
ald3087729p.Ser304Ala1.000
ald3087734c.915G>T1.000
ald3087743c.924G>C1.000
ald3087761c.942C>G1.000
ald3087767c.948G>C1.000
ald3087770c.951G>C1.000
fbiA3640347c.-196A>G1.000
fbiA3640365c.-178C>G1.000
fbiA3640989c.447T>C0.944
fbiA3640998c.456C>G0.952
fbiA3641004c.462A>G0.955
fbiA3641016c.474C>T0.783
fbiA3641019c.477G>C0.783
fbiA3641021p.Val160Ala0.783
fbiA3641028p.Glu162Asp0.783
fbiA3641035p.Lys165Arg0.947
fbiA3641046c.504T>C0.969
fbiA3641049c.507T>C0.970
fbiA3641070c.528C>T1.000
fbiA3641073c.531T>A1.000
fbiA3641077p.Gln179Lys1.000
fbiA3641088c.546G>C1.000
fbiA3641184c.642T>G1.000
fbiA3641190c.648G>A1.000
fbiA3641196c.654C>G1.000
fbiA3641200p.Ile220Val1.000
fbiA3641208c.666C>G1.000
fbiA3641271c.729C>T1.000
fbiA3641288p.Glu249Gly1.000
alr3840215c.1206A>G0.941
alr3840223c.1198T>G0.957
alr3840230c.1191A>C0.962
alr3840236c.1185T>C0.933
alr3840239c.1182C>T0.933
alr3840242c.1179G>A0.938
alr3840248c.1173G>C0.959
alr3840274p.Val383Leu0.962
alr3840275c.1146A>C0.962
alr3840287c.1134G>A0.960
alr3840382p.Met347Leu1.000
alr3840386c.1035C>T1.000
alr3840404c.1017C>T1.000
alr3840409p.Val338Ile1.000
alr3840410c.1011A>G1.000
alr3840418p.Cys335Arg1.000
alr3840419c.1002T>A1.000
alr3840424c.997T>C1.000
alr3840436c.985G>A1.000
alr3840437c.984C>A1.000
alr3840443c.978C>G1.000
alr3840452c.969G>A1.000
alr3840458c.963C>G1.000
alr3840469p.Val318Ile1.000
alr3840470c.951G>C1.000
alr3840476c.945T>G1.000
alr3840502p.Leu307Val1.000
alr3840504p.Asn306Thr1.000
alr3840517p.Pro302Glu1.000
alr3840518c.903C>G1.000
alr3840523p.Ile300Val1.000
alr3840527c.894T>G1.000
alr3840534p.Gly296Ala1.000
alr3840542c.879C>T1.000
alr3840548c.873C>T1.000
alr3840551c.870C>A1.000
alr3840554c.867C>G1.000
alr3840562p.Ile287Val1.000
alr3840566c.855T>C1.000
alr3840574c.847C>T1.000
alr3840578c.843A>C1.000
alr3840599c.822C>G1.000
alr3840607p.Val272Leu1.000
alr3840611c.810C>T1.000
alr3840624p.Leu266Arg1.000
alr3840627p.Ala265Glu1.000
alr3840632c.789T>C1.000
alr3840635c.786C>G1.000
alr3840638c.783G>A1.000
alr3840641c.780T>C1.000
alr3840644c.777C>G1.000
alr3840647c.774A>G1.000
alr3840662c.759C>G1.000
alr3840673p.Leu250Met1.000
alr3840682p.Thr247Ala1.000
alr3840944c.477A>G1.000
alr3840957p.Thr155Ser1.000
alr3840965c.456C>G1.000
alr3840968c.453C>G1.000
alr3840971c.450C>T1.000
alr3840974c.447G>T1.000
alr3840980c.441C>A1.000
alr3840989c.432C>G0.950
alr3840994p.His143Asp0.952
alr3840997c.424A>G0.957
alr3841001c.420T>C0.957
alr3841013c.408G>C0.967
alr3841018p.Leu135Val0.969
alr3841033p.Val130Ile0.968
alr3841036p.Gln129Glu0.968
alr3841037c.384C>G0.968
alr3841055c.366G>C0.971
alr3841079c.342A>G0.970
alr3841088c.333G>A0.971
alr3841100c.321T>C0.971
alr3841106c.315A>G0.970
alr3841113p.Asp103Ala0.962
alr3841115c.306A>C0.962
alr3841124c.297C>T0.963
alr3841127c.294T>C0.963
alr3841148c.273G>C0.305
alr3841154c.267G>C0.625
alr3841223c.198C>T0.923
alr3841229c.192C>G0.923
alr3841232c.189C>G0.923
alr3841240p.Leu61Val0.917
alr3841244c.177C>G0.917
alr3841249p.His58Ser0.917
alr3841250c.171G>A0.917
alr3841262c.159A>C0.923
alr3841274c.147C>T0.917
panD4043867p.Gly139Arg0.962
panD4044093c.189T>C1.000
panD4044096c.186G>A1.000
panD4044120c.162T>C1.000
panD4044123c.159A>G1.000
panD4044126c.156A>G1.000
panD4044138c.144A>G1.000
panD4044150c.132T>C1.000
panD4044156c.126T>C1.000
panD4044159c.123G>A1.000
panD4044162c.120T>C1.000
panD4044165c.117C>T1.000
panD4044177c.105G>C1.000
panD4044180c.102G>A1.000
panD4044188c.94A>G1.000
panD4044195c.87A>G1.000
panD4044225c.57G>A1.000
panD4044233p.Cys17Gln1.000
panD4044237c.45C>G1.000
panD4044264c.18C>G1.000
embC4240459c.597G>C0.333
embC4240471c.609C>T0.529
embC4240475p.Ala205Ser1.000
embC4240489c.627A>C1.000
embC4240490p.Pro210Ala1.000
embC4240495c.633T>C1.000
embC4240512p.Ser217Thr1.000
embC4240516c.654G>C1.000
embC4240519c.657T>C1.000
embC4240525c.663C>G1.000
embC4240561c.699C>G1.000
embC4240603c.741G>C0.154
embC4240615c.753G>C1.000
embC4240619p.Thr253Ser1.000
embC4240632p.Met257Thr1.000
embC4240639c.777C>T1.000
embC4240642c.780G>C1.000
embC4240645c.783G>C1.000
embC4240657c.795G>C1.000
embC4240660c.798C>G1.000
embC4240671p.Thr270Ile1.000
embC4240678c.816T>C1.000
embC4240681c.819G>C1.000
embC4240685p.Thr275Ala1.000
embC4240690c.828G>C1.000
embC4240693c.831T>C1.000
embC4240698p.Ala279Gly1.000
embC4240726c.864G>C0.610
embC4240729c.867C>G1.000
embC4240733p.Thr291Ser0.419
embC4240747c.885C>T0.556
embC4240756c.894G>C0.417
embC4240757p.Thr299Gly0.417
embC4240765c.903C>G0.583
embC4240771c.909G>C0.382
embC4240772p.Ser304Ala0.344
embC4240777p.Glu305Asp0.300
embC4240780c.918T>C0.321
embC4240783c.921G>C0.679
embC4240789c.927T>C1.000
embC4240793p.Ala311Ser0.360
embC4240803p.Tyr314Phe0.238
embC4240813p.Phe317Leu0.789
embC4240819c.957A>C1.000
embC4240822c.960C>T1.000
embC4240831c.969T>G1.000
embC4241059c.1197G>A1.000
embC4241071c.1209C>G1.000
embC4241086c.1224G>C1.000
embC4241095c.1233C>T1.000
embC4241101c.1239G>C1.000
embC4241121p.Ser420Asn1.000
embC4241137c.1275G>C1.000
embC4241146c.1284C>G1.000
embC4241153p.Ile431Val1.000
embC4241158c.1296T>C1.000
embC4241160p.Ala433Gly1.000
embC4241162c.1300T>C1.000
embC4241185c.1323G>C1.000
embC4241188c.1326C>T1.000
embC4241194c.1332C>G1.000
embC4241197c.1335G>C1.000
embC4241200c.1338C>T1.000
embC4241203c.1341T>C1.000
embC4241206c.1344G>C1.000
embC4241394p.Lys511Ser1.000
embC4241452c.1590G>C1.000
embC4241455c.1593C>T1.000
embC4241461c.1599C>G1.000
embC4241470c.1608C>G1.000
embC4241560c.1698C>T1.000
embC4241567p.Ile569Val1.000
embC4241572c.1710C>A1.000
embC4241578c.1716G>C1.000
embC4241584c.1722T>C1.000
embC4241587c.1725C>G1.000
embC4241593c.1731C>G1.000
embC4241611c.1749G>C1.000
embC4241614c.1752A>C1.000
embC4241623c.1761C>G1.000
embC4241644c.1782G>C1.000
embC4241648c.1786T>C1.000
embC4241656c.1794G>T1.000
embC4241665c.1803G>C1.000
embC4241668c.1806G>A1.000
embC4241671c.1809T>G1.000
embC4241689c.1827G>C1.000
embC4241690p.Gly610Ser1.000
embC4241694p.Ala611Val1.000
embC4241704c.1842C>T1.000
embC4241710c.1848G>C1.000
embC4241713c.1851G>C1.000
embC4241719c.1857G>C1.000
embC4241791c.1929G>C1.000
embC4241797c.1935C>T1.000
embC4241809c.1947A>C1.000
embC4241818c.1956C>T1.000
embC4242112c.2250G>C0.952
embC4242121c.2259A>G0.960
embC4242127c.2265G>C0.960
embC4242128p.Leu756Met0.960
embC4242136c.2274G>A0.966
embC4242138p.Leu759Gln0.966
embC4242142p.Asp760Glu1.000
embC4242151c.2289A>C1.000
embC4242154c.2292C>G1.000
embC4242573p.Glu904Ala0.385
embC4242575p.Gln905Glu0.333
embC4242583c.2721C>G0.385
embC4242625c.2763T>C0.543
embC4242629p.Ala923Ser0.543
embC4242682c.2820C>G1.000
embC4242691c.2829C>T1.000
embC4242704p.Asp948Asn1.000
embC4242709c.2847C>T1.000
embC4242710p.Gln950Glu1.000
embC4242715c.2853T>C1.000
embC4242716c.2854C>T1.000
embC4242739c.2877C>G1.000
embC4242740p.Leu960Val1.000
embC4242745c.2883A>G1.000
embC4242748c.2886A>G1.000
embA4243216c.-17G>C1.000
embA4243228c.-5G>A1.000
embA4243231c.-2T>C1.000
embA4244372c.1140T>C0.951
embA4244381c.1149G>A0.947
embA4244390c.1158G>C0.946
embA4245023c.1791A>G1.000
embA4245026c.1794T>C1.000
embA4245029c.1797T>C1.000
embA4245032c.1800A>G1.000
embA4245041c.1809C>G1.000
embA4245056c.1824C>G1.000
embA4245060c.1828T>C1.000
embA4245063c.1831C>T1.000
embA4245078p.Trp616Val1.000
embA4245083c.1851A>C1.000
embA4245089c.1857G>C1.000
embA4245093p.Ile621Val1.000
embA4245101c.1869G>C1.000
embA4245125c.1893G>C1.000
embA4245137c.1905T>C1.000
embA4245149c.1917C>G1.000
embA4245182c.1950T>C1.000
embA4245183c.1951C>T1.000
embA4245186p.Thr652Ala1.000
embA4245189c.1957C>T1.000
embA4245198p.Leu656Ala1.000
embA4245206c.1974A>C1.000
embA4245207c.1975T>C1.000
embA4245215c.1983A>C1.000
embA4245222p.Tyr664Leu1.000
embA4245245c.2013C>G1.000
embA4245257c.2025A>G1.000
embA4245258p.Val676Ile1.000
embA4245263c.2031A>G1.000
embA4245266p.Asp678Glu0.512
embA4245268p.Asn679Ser0.512
embA4245431c.2199T>C1.000
embA4245446c.2214C>T0.486
embA4245453p.Ala741Thr0.500
embA4245461c.2229C>A1.000
embA4245471p.Ala747Leu1.000
embA4245477p.Met749Leu1.000
embA4245497c.2265C>G1.000
embA4245506c.2274C>T1.000
embA4245518c.2286A>T1.000
embA4245524c.2292G>C1.000
embA4245530c.2298T>C1.000
embA4245531p.Ile767Val1.000
embA4245535p.Ser768Asn1.000
embA4245539c.2307C>G1.000
embA4245557p.Glu775Asp1.000
embA4245560c.2328C>G1.000
embA4245569p.Glu779Asp1.000
embA4245645p.Ala805Thr0.935
embA4245650p.Ile806Met0.939
embA4245740c.2508T>C0.700
embA4245743c.2511C>A0.700
embA4245980c.2748C>T0.905
embA4245987p.Gln919Glu0.905
embA4245992c.2760C>G0.913
embA4246010c.2778G>C0.938
embA4246013c.2781T>C0.939
embA4246020p.Ala930Thr0.950
embA4246041p.Asp937Asn0.952
embA4246049c.2817G>C0.952
embA4246055c.2823T>C0.949
embA4246058c.2826C>G0.946
embA4246064c.2832T>C0.970
embA4246076c.2844G>C1.000
embA4246079c.2847C>T1.000
embA4246080p.Pro950Ser1.000
embA4246085p.Glu951Asp1.000
embA4246088c.2856A>G1.000
embA4246097c.2865C>G1.000
embA4246109c.2877C>G1.000
embA4246115c.2883T>C1.000
embA4246164c.2932T>C1.000
embA4246184c.2952A>C1.000
embA4246187c.2955C>G1.000
embA4246196c.2964C>G1.000
embA4246205c.2973A>G1.000
embA4246211c.2979T>C1.000
embA4246217c.2985G>A1.000
embA4246220c.2988T>C1.000
embA4246223c.2991C>T1.000
embA4246227p.Ile999Val1.000
embA4246235c.3003G>A1.000
embA4246242p.Gln1004Ala1.000
embA4246253c.3021C>T1.000
embA4246277c.3045G>A1.000
embA4246278p.Ala1016Ser1.000
embA4246316c.3084T>C1.000
embA4246335p.Ala1035Thr1.000
embA4246338c.3106C>T1.000
embA4246341c.3109C>T1.000
embA4246355c.3123G>C0.967
embA4246359p.Ala1043Ser0.967
embA4246364c.3132G>C0.967
embA4246368c.3136C>T0.967
embA4246373c.3141T>C0.967
embA4246376c.3144G>C0.967
embA4246403c.3171G>C0.981
embB4246882c.369G>C1.000
embB4247059c.546C>T1.000
embB4247062c.549G>C1.000
embB4247065c.552G>A1.000
embB4247068c.555T>C1.000
embB4247089c.576G>C1.000
embB4247091p.Thr193Ser1.000
embB4247095c.582G>T1.000
embB4247101c.588G>C1.000
embB4247107c.594C>G1.000
embB4247114p.Ala201Asn1.000
embB4247117p.Val202Phe1.000
embB4247140c.627G>C1.000
embB4247425c.912G>C1.000
embB4247437c.924A>G1.000
embB4247452c.939C>G1.000
embB4247470c.957T>C1.000
embB4247497c.984T>C1.000
embB4247500c.987C>G0.972
embB4247506c.993C>G1.000
embB4247512c.999T>C1.000
embB4247527c.1014G>C1.000
embB4247539c.1026T>C1.000
embB4247550p.Ala346Asp1.000
embB4247554c.1041T>C1.000
embB4247566c.1053C>G1.000
embB4247572c.1059A>C1.000
embB4247590c.1077A>G1.000
embB4247629c.1116C>G1.000
embB4247632c.1119C>G1.000
embB4247638c.1125G>C1.000
embB4247645p.Glu378Thr0.923
embB4247648p.Ala379Ser1.000
embB4247656c.1143A>G1.000
embB4247657p.Pro382Ala1.000
embB4247662c.1149C>G1.000
embB4247677c.1164C>G1.000
embB4247684c.1171T>C1.000
embB4247722c.1209G>T1.000
embB4247725c.1212G>C1.000
embB4247729p.Gly406Pro1.000
embB4247753p.Val414Ile1.000
embB4247761c.1248T>C1.000
embB4247951p.Ser480Ala1.000
embB4247971c.1458C>A1.000
embB4247972p.Thr487Phe1.000
embB4247983c.1470G>C1.000
embB4248007c.1494C>A1.000
embB4248035p.Val508Ile1.000
embB4248041p.Ala510Thr1.000
embB4248044p.Lys511Ala1.000
embB4248055c.1542G>C1.000
embB4248064c.1551G>C1.000
embB4248070c.1557T>C1.000
embB4248085c.1572T>C1.000
embB4248097c.1584C>G1.000
embB4248118c.1605T>G1.000
embB4248127c.1614G>C1.000
embB4248130c.1617G>C1.000
embB4248133c.1620C>A1.000
embB4248139c.1626C>G1.000
embB4248142c.1629T>C1.000
embB4248143c.1630T>C1.000
embB4248146p.Ile545Leu1.000
embB4248149p.Thr546Ser1.000
embB4248157c.1644A>G1.000
embB4248161c.1648C>T1.000
embB4248169c.1656C>G1.000
embB4248190c.1677G>C1.000
embB4248200p.Ile563Val1.000
embB4248206p.Ser565Gly1.000
embB4248211c.1698G>A1.000
embB4248220c.1707A>C1.000
embB4248232c.1719G>A1.000
embB4248241c.1728C>T1.000
embB4248277c.1764G>C1.000
embB4248298c.1785C>T0.967
embB4248304c.1791G>C0.966
embB4248316c.1803C>G0.909
embB4248319c.1806A>G0.909
embB4248322c.1809G>C0.769
embB4248349c.1836G>C0.818
embB4248350c.1837T>C0.818
embB4248358c.1845C>G0.750
embB4248361c.1848A>C0.750
embB4248362p.Ser617Arg0.750
embB4248368c.1855C>T0.842
embB4248373c.1860C>T0.842
embB4248382c.1869C>T0.870
embB4248401p.Ala630Ser0.850
embB4248406c.1893G>A0.842
embB4248407p.Leu632Val0.842
embB4248410p.Phe633Met0.842
embB4248416p.Leu635Val0.842
embB4248419c.1906C>T0.941
embB4248425c.1912T>C0.944
embB4248432p.Trp640Phe0.842
embB4248472c.1959T>C0.906
embB4248943c.2430C>G1.000
embB4248967c.2454G>T1.000
embB4248968p.Thr819Leu1.000
embB4248981p.Ser823Lys1.000
embB4248985c.2472T>G1.000
embB4248994c.2481T>C1.000
embB4248997c.2484T>C1.000
embB4249000c.2487T>G1.000
embB4249018c.2505T>C1.000
embB4249117c.2604G>C1.000
embB4249123c.2610C>T1.000
embB4249126c.2613G>A1.000
embB4249129c.2616T>C1.000
embB4249136p.Val875Ile1.000
embB4249158p.Lys882Thr1.000
embB4249163p.Ala884Ser1.000
ethA4326253c.1221A>G1.000
ethA4326258c.1216A>G1.000
ethA4326262c.1212G>T1.000
ethA4326265c.1209A>G1.000
ethA4326271c.1203A>G1.000
ethA4326277c.1197C>G1.000
ethA4326280c.1194C>G1.000
ethA4326286c.1188G>A1.000
ethA4326295c.1179C>T1.000
ethA4326304c.1170G>A1.000
ethA4326307c.1167G>T1.000
ethA4326310c.1164A>G1.000
ethA4326847c.627G>C1.000
ethA4326850c.624T>C1.000
ethA4326964c.510G>A1.000
ethA4326976c.498G>A1.000
ethA4327061p.Ser138Thr1.000
ethA4327366c.108T>C0.900
ethA4327389p.Thr29Ser0.974
ethA4327396c.78A>C0.973
ethA4327399p.Asp25Glu0.971
ethA4327414c.60G>T1.000
ethA4327420c.54G>A1.000
ethA4327423c.51G>C1.000
ethA4327435c.39T>G1.000
ethA4327438c.36A>G1.000
ethA4327453c.21A>G1.000
ethA4327468c.6G>A1.000
ethR4327680c.132T>C1.000
ethR4327695c.147T>C1.000
ethR4327703p.Lys52Arg1.000
ethR4327713c.165T>G1.000
ethR4327714p.Ile56Leu1.000
ethR4327720c.172A>C1.000
gid4407603c.600C>T1.000
gid4407614p.Arg197Cys1.000
gid4407622p.Asn194Ser1.000
gid4407762c.441T>C0.375
gid4407770c.433A>G0.375

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
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