TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5d25ac00746be
Sample: 5d25ac00746be

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Summary
ID: 5d25ac00746be
Date: Wed Jul 10 10:15:47 2019
Strain: lineage4.2.1;lineage2.2.1
Drug-resistance: Drug-resistant

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkatG p.Ala379Val (1.00)
Rifampicin
EthambutolRembB p.His312Arg (1.00), embB p.Tyr384Asn (1.00), embB p.Thr437Ala (0.98)
Pyrazinamide
Streptomycin
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage4.2.1Euro-American (TUR)H3;H4None
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB5238c.-2T>C1.000
gyrB5254c.15A>G1.000
gyrB5284c.45G>A1.000
gyrB5287c.48T>C1.000
gyrB5293c.54C>G1.000
gyrB5302c.63A>G1.000
gyrB5305c.66G>A1.000
gyrB5308c.69G>A1.000
gyrB5341c.102T>C1.000
gyrB5359c.120C>T1.000
gyrB5363c.124T>C1.000
gyrB5377c.138T>C1.000
gyrB5422c.183T>C0.976
gyrB5425c.186A>G0.976
gyrB5426p.Thr63Ala0.976
gyrB5431c.192A>C0.976
gyrB5434c.195G>A0.976
gyrB5436p.Asn66Ser0.976
gyrB5440c.201A>G0.976
gyrB5449c.210T>C0.982
gyrB5455c.216T>C0.982
gyrB5470c.231C>G0.980
gyrB5485c.246C>T0.976
gyrB5488c.249C>A0.976
gyrB5491c.252T>C0.975
gyrB5500c.261C>A1.000
gyrB5502p.Thr88Met1.000
gyrB5527c.288C>G1.000
gyrB5542c.303A>C1.000
gyrB5545c.306A>G0.944
gyrB5548c.309A>G0.944
gyrB5551c.312T>C0.944
gyrB5560c.321C>G0.938
gyrB5767c.528C>T1.000
gyrB5771p.Ala178Asn1.000
gyrB5779c.540C>T1.000
gyrB5782c.543A>G1.000
gyrB5788c.549G>C1.000
gyrB5791c.552A>G1.000
gyrB5812c.573C>A1.000
gyrB5815c.576C>A1.000
gyrB5819c.580C>T1.000
gyrB5824c.585A>G1.000
gyrB5836c.597C>T1.000
gyrB5851c.612G>C1.000
gyrB5860c.621C>T1.000
gyrB5869c.630C>T1.000
gyrB5870p.Glu211Gln1.000
gyrB5873c.634A>C1.000
gyrB5884c.645A>G1.000
gyrB5902c.663A>G1.000
gyrB5926c.687G>C1.000
gyrB5929c.690G>A1.000
gyrB6067c.828G>C1.000
gyrB6073c.834T>C1.000
gyrB6079c.840C>T1.000
gyrB6085c.846C>A1.000
gyrB6086p.Thr283Pro1.000
gyrB6091c.852G>C1.000
gyrB6097c.858G>A1.000
gyrB6115c.876A>G0.963
gyrB6121c.882C>T0.969
gyrB6127c.888G>C0.973
gyrB6145c.906C>T0.977
gyrB6178c.939C>T0.978
gyrB6181c.942C>G1.000
gyrB6196c.957C>G1.000
gyrB6214c.975G>C1.000
gyrB6247c.1008G>A1.000
gyrB6250c.1011A>G1.000
gyrB6253c.1014G>C1.000
gyrB6259p.Asp340Glu1.000
gyrB6280c.1041T>C1.000
gyrB6286c.1047T>C1.000
gyrB6298c.1059C>G1.000
gyrB6299c.1060C>T1.000
gyrB6307c.1068T>G1.000
gyrB6313c.1074C>T1.000
gyrB6319c.1080G>C1.000
gyrB6331c.1092A>G0.981
gyrB6358c.1119C>G0.977
gyrB6361c.1122G>A0.976
gyrB6362c.1123T>C0.976
gyrB6379c.1140C>G0.971
gyrB6382c.1143A>G0.970
gyrB6388c.1149T>C0.970
gyrB6400c.1161C>G0.962
gyrB6403c.1164T>C0.958
gyrB6415c.1176G>C0.947
gyrB6421c.1182C>T0.944
gyrB6427c.1188T>C0.944
gyrB6430c.1191A>G0.941
gyrB6655c.1416T>C1.000
gyrB6670c.1431G>C1.000
gyrB6673c.1434A>C1.000
gyrB6674c.1435C>T1.000
gyrB6680c.1441C>T1.000
gyrB6700c.1461T>C0.970
gyrB6703c.1464G>C0.970
gyrB6709c.1470A>G0.970
gyrB6712c.1473G>C0.970
gyrB6730c.1491A>G0.970
gyrB6745c.1506T>C0.966
gyrB6760c.1521G>C0.960
gyrB6764c.1525C>T1.000
gyrB6769c.1530C>T1.000
gyrB6775c.1536G>C1.000
gyrB6787c.1548G>A1.000
gyrB6808c.1569C>T1.000
gyrB6826c.1587G>C1.000
gyrB6841c.1602T>C1.000
gyrB6844c.1605T>C1.000
gyrB6853c.1614A>G1.000
gyrB6856c.1617T>C1.000
gyrB6859c.1620T>C1.000
gyrB6862c.1623C>G1.000
gyrB6866c.1627C>T1.000
gyrB6872c.1633T>C1.000
gyrB6886c.1647C>T1.000
gyrB6889c.1650G>C1.000
gyrB6898c.1659G>T0.957
gyrB7018c.1779G>A0.958
gyrB7024c.1785G>C0.931
gyrB7030c.1791C>A0.933
gyrB7033c.1794G>C0.935
gyrB7060c.1821T>C0.977
gyrB7066c.1827G>C0.978
gyrB7081c.1842T>C0.981
gyrB7090c.1851C>T0.982
gyrB7093c.1854T>C0.982
gyrB7099c.1860G>A0.984
gyrB7108c.1869G>A0.985
gyrB7120c.1881T>C0.986
gyrB7123c.1884C>G0.986
gyrB7129c.1890T>G0.986
gyrB7132c.1893T>G0.986
gyrB7141c.1902T>C0.988
gyrB7147c.1908G>C0.987
gyrB7151c.1912C>T0.986
gyrB7165c.1926C>A0.985
gyrB7178c.1939T>C1.000
gyrB7207c.1968C>G1.000
gyrB7210c.1971C>T1.000
gyrB7213c.1974G>A1.000
gyrB7216c.1977G>C1.000
gyrB7219c.1980C>A1.000
gyrB7231c.1992C>G1.000
gyrB7246c.2007T>C1.000
gyrB7252c.2013G>C1.000
gyrA7298c.-4A>T1.000
gyrA7317c.16T>C1.000
gyrA7325c.24T>C1.000
gyrA7329p.Asp10Asn1.000
gyrA7334c.33G>T1.000
gyrA7335p.Leu12Ala1.000
gyrA7340p.Asp13Glu0.962
gyrA7349c.48A>G0.973
gyrA7355c.54T>C0.973
gyrA7362p.Glu21Gln1.000
gyrA7391c.90C>T0.973
gyrA7394c.93T>C0.973
gyrA7406c.105G>C0.947
gyrA7418c.117C>T0.944
gyrA7422c.121C>T0.912
gyrA7430c.129G>A0.933
gyrA7523c.222C>A0.978
gyrA7532c.231T>C0.980
gyrA7541c.240C>G0.963
gyrA7547c.246C>T0.983
gyrA7585p.Ser95Thr1.000
gyrA7595c.294C>G0.986
gyrA7601c.300C>G0.986
gyrA7619c.318C>T0.984
gyrA7622c.321C>T0.984
gyrA7631c.330G>C0.983
gyrA7652c.351C>G0.960
gyrA7664c.363T>C0.950
gyrA7667c.366C>T0.950
gyrA7694c.393A>G0.962
gyrA7703c.402G>A0.969
gyrA7715c.414G>C0.974
gyrA7728c.427A>C0.978
gyrA7766c.465C>T0.981
gyrA7769c.468C>T0.981
gyrA7784c.483A>G0.983
gyrA7787c.486G>A0.983
gyrA7799c.498A>G0.984
gyrA7832c.531G>T1.000
gyrA7835c.534A>C1.000
gyrA7838c.537C>T1.000
gyrA7850c.549C>G1.000
gyrA7859c.558A>C1.000
gyrA7886c.585T>C1.000
gyrA7889c.588G>A1.000
gyrA7892c.591G>C1.000
gyrA7919p.Glu206Asp0.981
gyrA7923p.His208Tyr0.980
gyrA7940c.639G>A0.968
gyrA7941p.Glu214Thr0.968
gyrA7946c.645C>G0.968
gyrA7958c.657C>G0.966
gyrA7963p.Gly221Glu0.962
gyrA7970c.669T>C0.962
gyrA7973c.672A>G0.962
gyrA7979c.678G>C0.962
gyrA7988c.687G>C0.952
gyrA7997c.696A>G0.941
gyrA8000c.699G>C0.944
gyrA8048c.747C>T0.909
gyrA8054c.753T>C1.000
gyrA8057c.756A>G1.000
gyrA8069c.768T>C1.000
gyrA8078c.777A>G1.000
gyrA8084c.783G>A1.000
gyrA8090c.789C>G1.000
gyrA8096c.795T>C1.000
gyrA8099c.798T>C1.000
gyrA8105c.804G>T1.000
gyrA8111c.810G>C1.000
gyrA8121c.820T>C1.000
gyrA8156c.855T>C1.000
gyrA8168c.867A>G1.000
gyrA8174c.873C>G1.000
gyrA8177c.876A>C1.000
gyrA8189c.888G>T1.000
gyrA8195c.894C>T1.000
gyrA8198c.897T>C1.000
gyrA8199p.Ser300Ala1.000
gyrA8207c.906T>C1.000
gyrA8217p.Ser306Gly1.000
gyrA8225p.Asp308Glu1.000
gyrA8235p.Leu312Val1.000
gyrA8247p.Ile316Val1.000
gyrA8253p.Ile318Leu1.000
gyrA8258c.957G>A1.000
gyrA8264c.963T>C1.000
gyrA8267c.966G>C1.000
gyrA8282c.981G>A1.000
gyrA8283p.Ile328Leu1.000
gyrA8288c.987T>C0.966
gyrA8294c.993T>C0.970
gyrA8315c.1014G>A0.976
gyrA8318c.1017C>G0.977
gyrA8324c.1023T>C0.979
gyrA8339c.1038A>G0.980
gyrA8340p.Ala347Ser0.980
gyrA8375c.1074G>C0.958
gyrA8382p.Leu361Met0.958
gyrA8393c.1092T>C0.960
gyrA8399c.1098T>C0.959
gyrA8402p.Asp367Glu0.960
gyrA8420c.1119T>C0.955
gyrA8421p.Val374Ile0.952
gyrA8433p.Thr378Arg0.955
gyrA8447c.1146C>A0.970
gyrA8450c.1149G>A0.970
gyrA8453c.1152A>C0.972
gyrA8462c.1161A>G0.973
gyrA8471c.1170T>C0.958
gyrA8486c.1185T>C0.960
gyrA8510c.1209G>A0.949
gyrA8513c.1212C>G0.949
gyrA8516c.1215T>C0.949
gyrA8519c.1218A>C0.968
gyrA8531c.1230G>A0.959
gyrA8546c.1245T>C0.955
gyrA8561c.1260A>G0.967
gyrA8562c.1261C>T0.967
gyrA8571c.1270C>T0.955
gyrA8603c.1302A>G0.970
gyrA8609c.1308G>C0.970
gyrA8619c.1318T>C0.984
gyrA8627c.1326C>T1.000
gyrA8633c.1332C>G1.000
gyrA8645c.1344C>T1.000
gyrA8655p.Ile452Val1.000
gyrA8666c.1365G>C1.000
gyrA8693c.1392T>C1.000
gyrA8694c.1393C>T1.000
gyrA8711c.1410A>C1.000
gyrA8723c.1422G>A1.000
gyrA8729c.1428T>C1.000
gyrA8732c.1431G>C1.000
gyrA8752p.Ala484Gly0.978
gyrA8756c.1455A>G0.978
gyrA8762c.1461G>C0.979
gyrA8767p.Arg489Lys0.980
gyrA8783c.1482G>T0.977
gyrA8786c.1485T>C0.978
gyrA8795c.1494C>T0.974
gyrA8796p.Ile499Val0.975
gyrA8801c.1500G>C0.975
gyrA8810c.1509A>C0.979
gyrA8813c.1512C>T0.978
gyrA8825c.1524G>A0.974
gyrA8828c.1527T>C0.974
gyrA8829c.1528T>C0.975
gyrA8852c.1551T>G0.976
gyrA8858c.1557T>C0.976
gyrA8870c.1569G>C0.974
gyrA8873c.1572A>C0.973
gyrA8876c.1575C>T0.974
gyrA8897c.1596T>C1.000
gyrA8903c.1602T>C1.000
gyrA8915c.1614A>G1.000
gyrA8924c.1623C>G1.000
gyrA8933c.1632G>A1.000
gyrA8939c.1638T>C1.000
gyrA8942c.1641G>C1.000
gyrA8945c.1644G>T1.000
gyrA8946c.1645T>C1.000
gyrA8981c.1680G>C0.983
gyrA8987c.1686C>G0.983
gyrA8998p.Leu566Trp0.984
gyrA9003c.1702C>T0.984
gyrA9017c.1716C>T0.986
gyrA9023c.1722A>C0.986
gyrA9029c.1728T>G0.985
gyrA9050p.Asp583Glu0.985
gyrA9065c.1764C>G0.985
gyrA9068c.1767G>C0.985
gyrA9071c.1770G>C0.985
gyrA9080c.1779G>C0.986
gyrA9089c.1788G>C0.985
gyrA9101c.1800A>G1.000
gyrA9119c.1818A>G1.000
gyrA9197c.1896G>C0.941
gyrA9200c.1899A>G0.950
gyrA9218c.1917C>T0.962
gyrA9230c.1929T>C0.967
gyrA9236c.1935G>C0.967
gyrA9242c.1941A>C0.969
gyrA9252p.Val651Ile0.973
gyrA9257c.1956C>T0.974
gyrA9284c.1983T>G0.979
gyrA9296c.1995T>C0.978
gyrA9304p.Gly668Glu1.000
gyrA9315c.2014C>T1.000
gyrA9323c.2022C>T1.000
gyrA9341c.2040C>G1.000
gyrA9345c.2044A>C1.000
gyrA9371c.2070G>A1.000
gyrA9374c.2073G>C1.000
gyrA9377c.2076A>G1.000
gyrA9383c.2082T>C1.000
gyrA9386c.2085T>G1.000
gyrA9395c.2094G>C1.000
gyrA9398c.2097T>G1.000
gyrA9401c.2100G>A1.000
gyrA9413c.2112G>A0.977
gyrA9419c.2118T>C0.974
gyrA9420p.Ile707Ala0.973
gyrA9449c.2148C>G0.983
gyrA9452c.2151G>C0.983
gyrA9476c.2175G>C0.978
gyrA9479c.2178G>T0.977
gyrA9485c.2184A>C0.975
gyrA9488c.2187G>C0.975
gyrA9491c.2190C>T0.975
gyrA9494c.2193T>C1.000
gyrA9497c.2196G>C1.000
gyrA9503c.2202T>C1.000
gyrA9518c.2217A>G1.000
gyrA9527c.2226A>G1.000
gyrA9542c.2241T>C1.000
gyrA9545c.2244A>G1.000
gyrA9551c.2250G>A0.979
gyrA9557c.2256G>C1.000
gyrA9560c.2259C>G1.000
gyrA9566c.2265C>T1.000
gyrA9585c.2284T>C1.000
gyrA9590c.2289T>G1.000
gyrA9593c.2292G>A0.980
gyrA9602c.2301T>C1.000
gyrA9604p.Val768Ala1.000
gyrA9626c.2325T>C0.980
gyrA9629c.2328C>A0.980
gyrA9630p.Val777Ile0.980
gyrA9635c.2334T>C0.981
gyrA9644c.2343T>C0.984
gyrA9650c.2349G>C0.984
gyrA9656c.2355C>G0.984
gyrA9659c.2358C>G0.985
gyrA9668c.2367C>A0.986
gyrA9689c.2388G>C0.985
gyrA9704c.2403T>C0.982
gyrA9707c.2406G>C0.981
gyrA9716c.2415T>C0.981
gyrA9722c.2421C>T0.979
gyrA9734c.2433A>T0.976
gyrA9749c.2448G>A0.974
gyrA9761c.2460A>G1.000
rpoB759583c.-224T>G1.000
rpoB759587c.-220T>A1.000
rpoB759606c.-201T>C1.000
rpoB759635c.-172C>T1.000
rpoB759644c.-163T>A1.000
rpoB759647c.-160T>C1.000
rpoB759661c.-146G>C1.000
rpoB759670c.-137C>T1.000
rpoB759671c.-136G>T1.000
rpoB759675c.-132T>C1.000
rpoB759676c.-131A>G1.000
rpoB759701c.-106A>T1.000
rpoB759714c.-93CG>C1.000
rpoB759716c.-91A>T0.933
rpoB759725c.-82A>C1.000
rpoB759732c.-75C>CT1.000
rpoB760059p.Tyr85Asp1.000
rpoB760067c.261G>C1.000
rpoB760070c.264T>A0.975
rpoB760101c.295T>C1.000
rpoB760106c.300G>C1.000
rpoB760112c.306T>C1.000
rpoB760118c.312T>C1.000
rpoB760121c.315T>C1.000
rpoB760130p.Asp108Glu0.984
rpoB760142c.336C>G0.983
rpoB760172c.366G>C0.957
rpoB760181c.375T>C0.970
rpoB760184c.378A>G0.970
rpoB760193c.387C>G0.957
rpoB760196c.390C>G0.971
rpoB760202c.396G>A0.973
rpoB760223c.417T>C0.972
rpoB760235c.429T>C0.986
rpoB760256c.450C>T0.987
rpoB760298c.492G>C0.987
rpoB760307c.501T>C0.987
rpoB760328c.522G>C1.000
rpoB760340c.534G>T1.000
rpoB760343c.537G>C1.000
rpoB760361c.555T>C1.000
rpoB760406c.600G>C1.000
rpoB760409c.603C>T1.000
rpoB760412c.606C>G1.000
rpoB760415c.609C>G1.000
rpoB760418c.612G>C1.000
rpoB760424c.618C>G1.000
rpoB760430c.624T>C1.000
rpoB760445c.639C>T1.000
rpoB760475c.669A>G1.000
rpoB760484c.678A>G1.000
rpoB760508c.702G>C1.000
rpoB760511c.705G>C1.000
rpoB760528p.Gln241Arg0.978
rpoB760532c.726T>C0.977
rpoB760533p.Val243Thr0.977
rpoB760563p.Arg253Met0.975
rpoB760577c.771G>A0.958
rpoB760591p.Val262Ala0.980
rpoB760604c.798G>A0.958
rpoB760607c.801G>C0.956
rpoB760611c.805T>C0.977
rpoB760625c.819C>A0.958
rpoB760646c.840C>G0.957
rpoB760655c.849A>G0.956
rpoB760661c.855A>C0.943
rpoB760664c.858G>C0.914
rpoB760670c.864G>C0.970
rpoB760673c.867G>A0.939
rpoB760674c.868T>C0.970
rpoB760679c.873A>G0.969
rpoB760683c.877T>C0.969
rpoB760718c.912C>T0.923
rpoB760724c.918T>C0.895
rpoB760727c.921C>A0.895
rpoB760730c.924T>C0.895
rpoB760805c.999G>C0.980
rpoB760817c.1011A>G0.981
rpoB760830c.1024T>C0.984
rpoB760841c.1035T>C0.985
rpoB760845p.Thr347Ala0.971
rpoB760859c.1053T>G0.986
rpoB760868c.1062C>G0.973
rpoB760919c.1113C>G0.984
rpoB760920c.1114C>T0.984
rpoB760928c.1122G>C1.000
rpoB760946c.1140A>G1.000
rpoB760971c.1165C>A1.000
rpoB760994c.1188G>A1.000
rpoB761006c.1200C>T1.000
rpoB761015c.1209G>C1.000
rpoB761027c.1221A>G1.000
rpoB761036c.1230G>A1.000
rpoB761037c.1231T>C1.000
rpoB761051c.1245G>C1.000
rpoB761066c.1260G>C0.962
rpoB761096c.1290G>C0.976
rpoB761097c.1291A>T1.000
rpoB761102c.1296A>G1.000
rpoB761132c.1326G>C1.000
rpoB761133c.1327T>C1.000
rpoB761150c.1344A>G1.000
rpoB761153c.1347G>T0.962
rpoB761168c.1362C>G0.960
rpoB761180c.1374A>C1.000
rpoB761183c.1377T>G0.986
rpoB761201c.1395G>A0.985
rpoB761204c.1398C>G0.985
rpoB761207c.1401C>T0.985
rpoB761234c.1428G>C1.000
rpoB761249c.1443A>G1.000
rpoB761255c.1449T>G1.000
rpoB761261c.1455G>T1.000
rpoB761273c.1467T>C1.000
rpoB761300c.1494G>A1.000
rpoB761318c.1512G>C1.000
rpoB761327c.1521A>G1.000
rpoB761346p.Val514Ile1.000
rpoB761354c.1548C>T1.000
rpoB761355p.Val517Leu1.000
rpoB761362p.Ser519Thr1.000
rpoB761366c.1560C>T1.000
rpoB761373p.Val523His0.957
rpoB761379c.1573C>T0.960
rpoB761384c.1578C>G0.963
rpoB761408c.1602G>C0.979
rpoB761423c.1617T>C0.978
rpoB761435c.1629T>C0.973
rpoB761438c.1632G>T0.972
rpoB761441p.Asp545Glu0.972
rpoB761444c.1638T>C0.972
rpoB761447c.1641C>G0.972
rpoB761471c.1665C>G0.980
rpoB761483c.1677G>C0.980
rpoB761492c.1686G>C0.980
rpoB761502p.Pro566Ala0.981
rpoB761510c.1704T>G0.981
rpoB761537c.1731C>G1.000
rpoB761561c.1755C>G0.983
rpoB761564c.1758G>C1.000
rpoB761573c.1767C>G1.000
rpoB761579c.1773G>C1.000
rpoB761600c.1794T>G0.985
rpoB761603c.1797C>T0.985
rpoB761606c.1800C>G0.985
rpoB761612c.1806G>T1.000
rpoB761615c.1809A>C1.000
rpoB761636c.1830G>T1.000
rpoB761645c.1839C>G1.000
rpoB761648c.1842T>C0.985
rpoB761657c.1851C>G1.000
rpoB761675c.1869G>C1.000
rpoB761682c.1876C>T1.000
rpoB761687c.1881C>T1.000
rpoB761693c.1887G>C1.000
rpoB761708c.1902C>T1.000
rpoB761721639EES>639EKS0.971
rpoB761732c.1926C>A1.000
rpoB761735c.1929C>G1.000
rpoB761750c.1944G>C1.000
rpoB761765c.1959T>C1.000
rpoB761772p.His656Ala1.000
rpoB761778p.Asn658Asp1.000
rpoB761791p.Arg662His1.000
rpoB761813c.2007T>C1.000
rpoB761819c.2013G>C1.000
rpoB761822c.2016C>G1.000
rpoB761834c.2028T>C0.975
rpoB761848p.Cys681Ser0.973
rpoB761852c.2046C>G0.974
rpoB761864c.2058G>C0.971
rpoB761867c.2061C>A0.970
rpoB761870p.Asp688Glu0.970
rpoB761873c.2067A>G0.970
rpoB761876c.2070C>A0.941
rpoB761885c.2079T>C0.956
rpoB761891c.2085G>C0.977
rpoB761906c.2100C>G0.977
rpoB761912c.2106T>C1.000
rpoB761913p.Asp703Gln0.977
rpoB761916p.Asp704Asn1.000
rpoB761954c.2148C>G0.982
rpoB761990c.2184G>C0.956
rpoB762008c.2202C>G0.969
rpoB762011c.2205G>C0.912
rpoB762017c.2211A>G0.939
rpoB762020c.2214G>A0.903
rpoB762024p.Val740Ile0.903
rpoB762053c.2247T>C0.980
rpoB762062c.2256T>C0.963
rpoB762065c.2259T>C0.981
rpoB762071c.2265C>T0.946
rpoB762083c.2277T>C0.981
rpoB762086c.2280G>C0.982
rpoB762114p.Ile770Val0.985
rpoB762119c.2313C>T0.972
rpoB762131c.2325C>G0.985
rpoB762134c.2328C>G0.986
rpoB762167c.2361T>C0.986
rpoB762185c.2379G>C0.987
rpoB762218c.2412T>G0.986
rpoB762224c.2418C>G0.986
rpoB762236c.2430G>A0.986
rpoB762254c.2448T>G0.985
rpoB762257c.2451C>G0.985
rpoB762266c.2460T>C1.000
rpoB762269c.2463G>A1.000
rpoB762278c.2472C>G1.000
rpoB762284c.2478G>C0.984
rpoB762293c.2487T>C0.983
rpoB762317c.2511A>G0.982
rpoB762338c.2532T>C0.980
rpoB762347c.2541T>C0.981
rpoB762362p.Glu852Asp0.979
rpoB762369c.2563T>C0.978
rpoB762374c.2568G>C0.978
rpoB762380c.2574T>C0.980
rpoB762395c.2589G>C0.976
rpoB762398c.2592T>C0.977
rpoB762401c.2595G>C0.932
rpoB762404c.2598T>C0.978
rpoB762410c.2604T>C0.981
rpoB762416c.2610A>G0.982
rpoB762434c.2628T>C0.948
rpoB762470c.2664G>C0.984
rpoB762486p.Pro894Ala0.942
rpoB762489p.Val895Gln0.941
rpoB762510p.Ala902Pro0.966
rpoB762518c.2712C>G0.931
rpoB762533c.2727T>C0.957
rpoB762536c.2730T>C0.955
rpoB762537c.2731T>C0.955
rpoB762551c.2745C>T0.953
rpoB762557c.2751G>C0.950
rpoB762581c.2775T>C0.885
rpoB762582c.2776T>C0.885
rpoB762587c.2781G>A0.885
rpoB762599c.2793T>A0.824
rpoB762605c.2799T>C0.824
rpoB762608c.2802C>G0.824
rpoB762710c.2904G>T0.917
rpoB762740c.2934G>A1.000
rpoB762749c.2943C>G1.000
rpoB762758c.2952G>A1.000
rpoB762760p.Cys985Ser1.000
rpoB762764c.2958G>A1.000
rpoB762765c.2959C>T1.000
rpoB762776c.2970C>T1.000
rpoB762782c.2976T>C1.000
rpoB762799p.Ala998Gly1.000
rpoB762812c.3006C>G1.000
rpoB762813p.Met1003Val1.000
rpoB762827c.3021G>C1.000
rpoB762830c.3024C>T1.000
rpoB762857c.3051C>G1.000
rpoB762860c.3054G>T1.000
rpoB762899c.3093G>C1.000
rpoB762929c.3123G>C1.000
rpoB762995c.3189G>C1.000
rpoB763028c.3222T>C1.000
rpoB763031c.3225T>G1.000
rpoB763034c.3228C>G1.000
rpoB763040c.3234C>G1.000
rpoB763050c.3244C>T0.979
rpoB763070c.3264T>C0.976
rpoB763076c.3270C>T0.977
rpoB763085c.3279C>G0.976
rpoB763094c.3288G>C0.978
rpoB763115c.3309T>C0.976
rpoB763124c.3318C>T0.933
rpoB763127c.3321G>C0.936
rpoB763169c.3363A>G0.980
rpoB763193c.3387C>G0.980
rpoB763202c.3396A>G1.000
rpoB763206c.3400A>T1.000
rpoB763214c.3408T>C1.000
rpoB763226c.3420A>G1.000
rpoB763238c.3432T>C1.000
rpoC763351c.-19T>C1.000
rpoC763352c.-18T>A1.000
rpoC763375c.6C>A0.972
rpoC763408c.39T>C0.972
rpoC763411c.42T>G0.972
rpoC763414c.45T>C0.972
rpoC763430c.61A>C0.977
rpoC763435c.66A>G0.977
rpoC763444c.75T>C0.976
rpoC763456c.87A>G0.979
rpoC763468c.99G>C0.978
rpoC763486c.117T>C0.980
rpoC763505c.136C>T0.984
rpoC763561c.192G>A0.986
rpoC763600c.231C>T0.985
rpoC763606c.237C>T0.984
rpoC763618c.249C>A0.984
rpoC763633c.264T>C0.980
rpoC763636c.267T>G0.981
rpoC763639c.270G>A0.981
rpoC763658c.289C>T0.979
rpoC763666c.297G>A0.980
rpoC763696c.327T>C0.974
rpoC763699c.330G>C0.973
rpoC763702c.333C>G1.000
rpoC763708c.339G>C1.000
rpoC763714c.345G>C1.000
rpoC763717c.348T>C1.000
rpoC763732c.363C>G1.000
rpoC763735c.366G>C1.000
rpoC763744c.375G>C1.000
rpoC763765c.396T>C1.000
rpoC763771c.402C>T1.000
rpoC763781p.Ser138Ala1.000
rpoC763801c.432C>G1.000
rpoC763807c.438T>C1.000
rpoC763813c.444C>G1.000
rpoC763819c.450G>C1.000
rpoC763835p.Ala156Met1.000
rpoC763855c.486C>T1.000
rpoC763858c.489A>G0.972
rpoC763867c.498C>G1.000
rpoC763872p.Gly168Ala1.000
rpoC763876p.Glu169Asp1.000
rpoC763877c.508C>T1.000
rpoC763882c.513G>A1.000
rpoC763885c.516C>G1.000
rpoC763888c.519G>C1.000
rpoC763891c.522G>C1.000
rpoC763916p.Glu183Gln0.982
rpoC763945c.576T>C0.983
rpoC763948c.579G>C0.983
rpoC763951c.582G>A1.000
rpoC763987c.618C>T1.000
rpoC763991p.Ile208Leu1.000
rpoC763996c.627T>C1.000
rpoC764005c.636G>C0.980
rpoC764011c.642T>C0.981
rpoC764024c.655T>C1.000
rpoC764040p.Ser224Asn1.000
rpoC764044c.675T>C1.000
rpoC764059c.690G>C1.000
rpoC764083c.714A>G1.000
rpoC764101c.732C>G1.000
rpoC764102p.Val245Gln1.000
rpoC764119c.750G>A0.980
rpoC764131c.762T>C0.982
rpoC764140c.771C>T0.983
rpoC764161c.792G>C0.982
rpoC764203c.834G>C1.000
rpoC764206p.Asp279Glu1.000
rpoC764217p.Asn283Ser1.000
rpoC764254c.885G>C1.000
rpoC764266c.897T>C1.000
rpoC764269c.900G>C1.000
rpoC764272c.903G>T1.000
rpoC764278c.909A>G1.000
rpoC764284c.915G>C1.000
rpoC764317c.948C>T1.000
rpoC764344c.975C>T1.000
rpoC764347c.978G>C1.000
rpoC764365c.996C>T1.000
rpoC764380c.1011G>C1.000
rpoC764381c.1012T>A1.000
rpoC764387c.1018T>C1.000
rpoC764404c.1035C>A1.000
rpoC764405c.1036A>C1.000
rpoC764419c.1050C>G1.000
rpoC764431c.1062G>C1.000
rpoC764434c.1065A>G1.000
rpoC764435c.1066A>C1.000
rpoC764446c.1077T>C1.000
rpoC764449c.1080G>C1.000
rpoC764452c.1083T>C1.000
rpoC764458c.1089G>C1.000
rpoC764461c.1092A>G1.000
rpoC764497c.1128A>G1.000
rpoC764500c.1131C>G0.982
rpoC764503c.1134G>C0.967
rpoC764521c.1152T>C0.981
rpoC764524c.1155C>A1.000
rpoC764527c.1158C>T0.981
rpoC764533c.1164C>T0.981
rpoC764536c.1167G>A0.982
rpoC764539c.1170C>G0.983
rpoC764575c.1206T>G0.986
rpoC764576c.1207T>A0.972
rpoC764587c.1218C>G0.976
rpoC764648c.1279C>A1.000
rpoC764653c.1284G>C1.000
rpoC764656c.1287C>T1.000
rpoC764668c.1299C>T1.000
rpoC764674c.1305G>A1.000
rpoC764681c.1312C>T1.000
rpoC764746c.1377G>T1.000
rpoC764752c.1383G>C1.000
rpoC764755c.1386C>T1.000
rpoC764764c.1395T>C1.000
rpoC764767c.1398G>C1.000
rpoC764791c.1422C>G1.000
rpoC764800c.1431G>A1.000
rpoC764803c.1434C>T1.000
rpoC764809c.1440C>T1.000
rpoC764815c.1446A>G1.000
rpoC764830c.1461C>G1.000
rpoC764833c.1464A>G1.000
rpoC764872c.1503A>G1.000
rpoC764875c.1506C>A1.000
rpoC764888c.1519T>C1.000
rpoC764902c.1533C>G1.000
rpoC764911c.1542A>G1.000
rpoC764918p.Val517Ile1.000
rpoC764923c.1554A>G1.000
rpoC764932c.1563C>G1.000
rpoC764948c.1579T>C1.000
rpoC764968c.1599T>C1.000
rpoC765052c.1683C>G1.000
rpoC765067c.1698G>C1.000
rpoC765073c.1704G>C1.000
rpoC765076c.1707A>G1.000
rpoC765079c.1710T>C1.000
rpoC765085c.1716T>C1.000
rpoC765088c.1719G>C1.000
rpoC765089c.1720T>C1.000
rpoC765100c.1731G>C1.000
rpoC765103c.1734G>A1.000
rpoC765115c.1746G>A1.000
rpoC765122c.1753C>T1.000
rpoC765146p.Pro593Asp1.000
rpoC765151c.1782G>C1.000
rpoC765340p.Gln657His0.889
rpoC765349p.Asp660Glu0.889
rpoC765350p.Ala661Pro0.889
rpoC765358p.Met663Ile0.900
rpoC765364p.Glu665Asp0.905
rpoC765367c.1998C>G0.909
rpoC765376c.2007C>G0.926
rpoC765383p.Met672Leu0.931
rpoC765395c.2026C>T0.939
rpoC765405p.Leu679Pro0.946
rpoC765409c.2040T>C0.947
rpoC765430c.2061G>A0.959
rpoC765445c.2076G>T0.964
rpoC765451c.2082C>G0.960
rpoC765452p.Ala695Ser0.940
rpoC765478c.2109T>C0.982
rpoC765496c.2127C>G0.983
rpoC765499c.2130C>G0.983
rpoC765526c.2157C>G0.986
rpoC765541c.2172C>A1.000
rpoC765547c.2178C>A1.000
rpoC765553c.2184C>T1.000
rpoC765556c.2187G>C1.000
rpoC765562c.2193G>C1.000
rpoC765583c.2214G>T1.000
rpoC765586c.2217G>A1.000
rpoC765589c.2220G>C1.000
rpoC765610c.2241C>T1.000
rpoC765612p.His748Arg1.000
rpoC765622p.Glu751Asp1.000
rpoC765628c.2259G>C1.000
rpoC765676c.2307G>A1.000
rpoC765688c.2319G>C1.000
rpoC765689c.2320C>T1.000
rpoC765694c.2325G>C1.000
rpoC765700c.2331T>C1.000
rpoC765724c.2355C>G1.000
rpoC765727c.2358T>C1.000
rpoC765734c.2365T>C1.000
rpoC765748c.2379C>T1.000
rpoC765752p.Asp795Ser1.000
rpoC765757c.2388C>T1.000
rpoC765784c.2415C>G1.000
rpoC765787c.2418C>T1.000
rpoC765790c.2421C>T1.000
rpoC765793c.2424C>G1.000
rpoC765796c.2427C>T1.000
rpoC765811c.2442T>C1.000
rpoC765814c.2445A>G1.000
rpoC765826c.2457T>A1.000
rpoC765835c.2466C>T1.000
rpoC765850c.2481G>C1.000
rpoC765883c.2514C>G1.000
rpoC765886c.2517C>G1.000
rpoC765892c.2523T>C1.000
rpoC765910c.2541G>C1.000
rpoC765934c.2565C>T1.000
rpoC765952c.2583G>C1.000
rpoC765967c.2598C>T1.000
rpoC765979c.2610C>G1.000
rpoC765994c.2625A>T0.987
rpoC765997c.2628T>C1.000
rpoC766021c.2652G>C1.000
rpoC766043p.Gln892Gly1.000
rpoC766070c.2701C>T1.000
rpoC766082p.Ala905Gln1.000
rpoC766090p.Asp907Glu1.000
rpoC766092p.Gly908Val1.000
rpoC766105c.2736C>T1.000
rpoC766129c.2760C>G1.000
rpoC766249c.2880C>A1.000
rpoC766255c.2886G>T1.000
rpoC766270c.2901G>C1.000
rpoC766274p.Ala969Thr1.000
rpoC766280p.Ser971Gly1.000
rpoC766300c.2931C>G1.000
rpoC766303c.2934C>T1.000
rpoC766306c.2937C>T1.000
rpoC766312c.2943T>C1.000
rpoC766315c.2946C>G1.000
rpoC766324c.2955C>T1.000
rpoC766351c.2982C>G1.000
rpoC766360c.2991C>T0.980
rpoC766381c.3012C>T0.979
rpoC766384c.3015A>G0.979
rpoC766387c.3018C>G0.980
rpoC766393c.3024C>G0.979
rpoC766397c.3028C>T0.980
rpoC766408c.3039C>T0.981
rpoC766417c.3048C>T0.981
rpoC766426c.3057C>T0.981
rpoC766483c.3114G>C0.985
rpoC766486c.3117A>G0.985
rpoC766492c.3123T>C0.985
rpoC766495c.3126C>T0.985
rpoC766519c.3150C>A1.000
rpoC766528c.3159T>C1.000
rpoC766534c.3165C>G1.000
rpoC766537c.3168G>A1.000
rpoC766543c.3174C>T1.000
rpoC766549c.3180G>T0.986
rpoC766570c.3201T>G0.986
rpoC766573c.3204T>C0.971
rpoC766583p.Gly1072Ser0.981
rpoC766591c.3222A>G0.981
rpoC766594c.3225G>C0.981
rpoC766597c.3228C>G0.982
rpoC766607p.Ile1080Leu0.984
rpoC766621c.3252G>A0.984
rpoC766645c.3276A>G0.983
rpoC766651c.3282T>C1.000
rpoC766654c.3285C>G1.000
rpoC766657c.3288A>G1.000
rpoC766672c.3303T>C1.000
rpoC766681c.3312C>T1.000
rpoC766684c.3315C>G1.000
rpoC766700c.3331C>T1.000
rpoC766714c.3345G>C1.000
rpoC766726c.3357T>C1.000
rpoC766747c.3378C>T1.000
rpoC766765c.3396A>C1.000
rpoC766774c.3405T>C1.000
rpoC766792c.3423C>G0.978
rpoC766795c.3426C>T0.978
rpoC766801c.3432C>T0.977
rpoC766804c.3435A>G0.977
rpoC766843c.3474T>G0.982
rpoC766864c.3495G>C0.982
rpoC766894c.3525T>C0.977
rpoC766895c.3526T>C0.977
rpoC766900c.3531T>C0.978
rpoC766903c.3534C>T0.979
rpoC766907c.3538C>T0.979
rpoC766918c.3549C>T0.982
rpoC766921c.3552G>C0.983
rpoC766933c.3564A>G1.000
rpoC766945c.3576A>G1.000
rpoC766963c.3594T>C1.000
rpoC766972c.3603G>C1.000
rpoC766975c.3606C>T0.986
rpoC766996c.3627C>T1.000
rpoC767002c.3633G>C1.000
rpoC767033c.3664T>A0.985
rpoC767059c.3690T>G0.984
rpoC767062c.3693C>A0.984
rpoC767098c.3729T>C0.985
rpoC767119c.3750A>G0.983
rpoC767167c.3798C>T1.000
rpoC767180p.Ala1271Gln1.000
rpoC767185c.3816G>T1.000
rpoC767191c.3822C>G1.000
rpoC767200c.3831G>A1.000
rpoC767206c.3837C>A1.000
rpoC767209c.3840T>G1.000
rpoC767212c.3843G>C1.000
rpoC767221c.3852C>G1.000
rpoC767233c.3864T>C1.000
rpoC767263c.3894T>C1.000
rpoC767264p.Ala1299Gln1.000
rpoC767275c.3906T>A1.000
rpoC767278c.3909T>C1.000
rpoC767281c.3912C>G1.000
rpoC767284c.3915C>T1.000
rpoC767287c.3918G>A1.000
rpsL781571c.12C>T1.000
rpsL781586c.27C>A1.000
rpsL781608p.Ser17Ala1.000
rpsL781628c.69T>C1.000
rpsL781631c.72G>C1.000
rpsL781649c.90T>C1.000
rpsL781655c.96T>C1.000
rpsL781658c.99A>G1.000
rpsL781664c.105C>T1.000
rpsL781667c.108C>G1.000
rpsL781709c.150G>C0.984
rpsL781715c.156T>C0.982
rpsL781718c.159C>G0.982
rpsL781721c.162C>G0.983
rpsL781728c.169T>C0.984
rpsL781742c.183C>T0.986
rpsL781760c.201T>C0.984
rpsL781808c.249C>T0.966
rpsL781832c.273T>C0.967
rpsL781841c.282C>G0.964
rpsL781847c.288G>A0.964
rpsL781865c.306G>C0.958
rpsL781868c.309T>C0.978
rpsL781871c.312G>C0.978
rpsL781877c.318T>A0.977
rpsL781880c.321C>G0.956
rpsL781892c.333A>G0.980
rpsL781898c.339A>T0.981
rpsL781916c.357T>C0.978
rpsL781929p.Gly124Ser1.000
rplC800797c.-12T>G0.974
rplC800799c.-10G>C0.974
rplC800800c.-9G>T0.974
rplC800801c.-8A>G0.974
rplC800817c.9A>C0.981
rplC800844c.36T>C0.980
rplC800865c.57A>G1.000
rplC800867p.Ser20Asn1.000
rplC800877c.69A>C1.000
rplC800907c.99C>G1.000
rplC800913c.105G>C1.000
rplC800916c.108A>T1.000
rplC800922c.114C>G1.000
rplC800934c.126C>G1.000
rplC800937c.129A>G1.000
rplC800946c.138T>G1.000
rplC800949c.141T>C1.000
rplC800955c.147C>G1.000
rplC800958c.150G>A1.000
rplC800970c.162T>C1.000
rplC800976c.168G>A1.000
rplC800982c.174C>T1.000
rplC800996p.Asn63Thr1.000
rplC801009c.201A>C1.000
rplC801132c.324T>C0.968
rplC801144c.336C>G0.968
rplC801147c.339T>C0.969
rplC801153c.345G>C0.975
rplC801174c.366T>C0.982
rplC801201c.393C>T1.000
rplC801210c.402T>C1.000
rplC801216c.408C>A1.000
rplC801219c.411C>T1.000
rplC801220p.Ser138Ala1.000
rplC801246c.438C>G0.988
rplC801252c.444G>C0.988
rplC801267c.459A>T0.988
rplC801276c.468G>C0.989
rplC801297c.489C>T0.989
rplC801312c.504G>C0.989
rplC801339c.531T>G0.986
rplC801341p.Leu178Gln0.985
rplC801348c.540T>G0.985
rplC801357c.549T>C0.985
rplC801372c.564G>A0.983
rplC801385c.577C>T1.000
rplC801396c.588T>C1.000
rplC801405c.597T>C1.000
rplC801417c.609T>C1.000
rplC801423c.615G>C1.000
rplC801426c.618C>G1.000
rplC801438c.630T>C1.000
rplC801447c.639A>G1.000
rrs1471935r.90t>c0.984
rrs1471969r.124t>c0.982
rrs1471970r.125g>a0.981
rrs1471984r.139t>a0.981
rrs1471985r.140t>c1.000
rrs1472030r.185g>t1.000
rrs1472031r.186g>t1.000
rrs1472033r.188a>g1.000
rrs1472034r.189t>c1.000
rrs1472040r.195t>c1.000
rrs1472053r.208agc>a1.000
rrs1472061r.216a>t1.000
rrs1472075r.230a>g1.000
rrs1472969r.1124a>g0.917
rrs1472970r.1125c>g0.917
rrs1472977r.1132g>c0.917
rrs1472978r.1133t>c0.923
rrs1473120r.1275c>ct0.881
rrs1473123r.1278a>t0.984
rrl1473399c.-259AC>A0.980
rrl1473402c.-256C>CAT1.000
rrl1473409c.-249T>A1.000
rrl1473410c.-248G>A1.000
rrl1473417c.-241C>T1.000
rrl1473419c.-239T>C1.000
rrl1473421c.-237G>A1.000
rrl1473437c.-221T>C1.000
rrl1473449c.-209G>A1.000
rrl1473453c.-205G>A1.000
rrl1473465c.-193T>C1.000
rrl1473473c.-185AAGTTG>A1.000
rrl1473493c.-165G>A1.000
rrl1473517c.-141A>G1.000
rrl1473525c.-133C>G1.000
rrl1473529c.-129T>A1.000
rrl1473541c.-117G>A1.000
rrl1473542c.-116C>T1.000
rrl1473571c.-87C>T1.000
rrl1473600c.-58A>G1.000
rrl1473603c.-55C>T1.000
rrl1473607c.-51CGG>C1.000
rrl1473613c.-45G>C1.000
rrl1473614c.-44C>G1.000
rrl1473618c.-40G>A1.000
rrl1473626c.-32C>CT1.000
rrl1473635c.-23A>ATTT1.000
rrl1473648c.-10TTTG>T1.000
rrl1473731r.74t>a1.000
rrl1473806r.149c>t1.000
rrl1473877r.220g>a0.980
rrl1473887r.230t>a1.000
rrl1473888r.231t>a1.000
rrl1473898r.241c>t1.000
rrl1473924r.267a>at0.962
rrl1473980r.323a>at0.864
rrl1473981r.324g>c1.000
rrl1473986r.329t>c1.000
rrl1473995r.338g>t1.000
rrl1474009r.352a>g1.000
rrl1474034r.377g>a1.000
rrl1474083r.426c>t0.981
rrl1474103r.446a>t1.000
rrl1474140r.483c>t1.000
rrl1474151r.494c>t1.000
rrl1474201r.544t>a0.984
rrl1474285r.628cct>c1.000
rrl1474306r.649a>c1.000
rrl1474308r.651g>t1.000
rrl1474310r.653t>g1.000
rrl1474362r.705a>g0.981
rrl1474376r.719t>c1.000
rrl1474412r.755g>gt1.000
rrl1474413r.756acccac>a1.000
rrl1474419r.762a>t1.000
rrl1474423r.766gcata>g1.000
rrl1474424r.767cat>c1.000
rrl1474427r.770a>g1.000
rrl1474430r.773c>a1.000
rrl1474437r.780gaa>g1.000
rrl1474632r.975g>t1.000
rrl1474639r.982g>a1.000
rrl1474673r.1016t>c1.000
rrl1474717r.1060a>t0.975
rrl1474794r.1137c>a0.980
rrl1474831r.1174a>g0.980
rrl1474950r.1293g>a1.000
rrl1474961r.1304t>g1.000
rrl1474962r.1305t>c1.000
rrl1474963r.1306g>a1.000
rrl1474964r.1307t>a1.000
rrl1475005r.1348c>t1.000
rrl1475006r.1349a>g1.000
rrl1475028r.1371g>a0.982
rrl1475061r.1404c>t0.983
rrl1475213r.1556c>t1.000
rrl1475266r.1609t>c1.000
rrl1475273r.1616t>g1.000
rrl1475289r.1632g>a1.000
rrl1475290r.1633a>g1.000
rrl1475291r.1634a>c1.000
rrl1475315r.1658a>t1.000
rrl1475333r.1676t>c1.000
rrl1475355r.1698c>t1.000
rrl1475369r.1712g>a1.000
rrl1475403r.1746t>a1.000
rrl1475429r.1772g>a0.981
rrl1475526r.1869c>a0.972
rrl1475608r.1951t>c0.971
rrl1475638r.1981c>t0.978
rrl1475659r.2002g>a0.980
rrl1475988r.2331a>g0.957
rrl1476035r.2378g>a0.976
rrl1476049r.2392c>t0.958
rrl1476086r.2429g>a0.980
rrl1476089r.2432t>c0.958
rrl1476095r.2438c>g0.981
rrl1476115r.2458t>c0.980
rrl1476117r.2460g>c0.980
rrl1476224r.2567a>g1.000
rrl1476251r.2594t>c1.000
rrl1476281r.2624t>c1.000
rrl1476297r.2640c>t1.000
rrl1476299r.2642c>t1.000
rrl1476529r.2872a>g1.000
rrl1476580r.2923g>a1.000
rrl1476597r.2940g>a1.000
rrl1476619r.2962c>t1.000
rrl1476628r.2971t>a1.000
rrl1476679r.3022t>c1.000
rrl1476726r.3069a>g0.984
rrl1476732r.3075t>c0.967
rrl1476755r.3098g>a0.964
rrl1476759r.3102t>a0.963
rrl1476770r.3113t>c0.957
rrl1476771r.3114g>a0.957
fabG11673475c.36A>C0.929
fabG11673493c.54C>T0.972
fabG11673499c.60T>C0.974
fabG11673505c.66A>T0.975
fabG11673517c.78G>A0.977
fabG11673535c.96A>G0.981
fabG11673547c.108T>C0.983
fabG11673568c.129C>G1.000
fabG11673574c.135C>G1.000
fabG11673589c.150A>C1.000
fabG11673595c.156A>C1.000
fabG11673596p.Lys53Glu1.000
fabG11673607c.168T>C1.000
fabG11673609p.Gly57Ala1.000
fabG11673616c.177A>G1.000
fabG11673619c.180T>C1.000
fabG11673657p.Thr73Lys1.000
fabG11673660p.Ala74Glu1.000
fabG11673664c.225A>C1.000
fabG11673667c.228A>G1.000
fabG11673679c.240T>G1.000
fabG11673682c.243G>C1.000
fabG11673685c.246C>T1.000
fabG11673710p.Leu91Val1.000
fabG11673715c.276C>T1.000
fabG11673724c.285A>G1.000
fabG11673730c.291C>G1.000
fabG11673733p.Met98Ile1.000
fabG11673736c.297G>A1.000
fabG11673745c.306G>A1.000
fabG11673748c.309A>G0.955
fabG11673749p.Lys104Arg0.955
fabG11673767p.Asn110Asp1.000
fabG11673784c.345G>A1.000
fabG11673797p.Ala120Thr1.000
fabG11673802c.363A>G1.000
fabG11673809p.Ser124Ala1.000
fabG11673856c.417T>A1.000
fabG11673862c.423C>G1.000
fabG11673871c.432C>T1.000
fabG11673916c.477A>T1.000
fabG11673919c.480G>C1.000
fabG11673922c.483T>C1.000
fabG11673925c.486C>G1.000
fabG11673946c.507C>A1.000
fabG11673955c.516G>C1.000
fabG11673960p.Ala174Val1.000
fabG11673970c.531C>G1.000
fabG11673976c.537T>C1.000
fabG11673982c.543G>C1.000
fabG11673988c.549G>C0.977
fabG11673991c.552C>G1.000
fabG11674015c.576C>A1.000
fabG11674018c.579G>C1.000
fabG11674024c.585T>C1.000
fabG11674033c.594T>C1.000
fabG11674037p.Gln200Glu1.000
fabG11674045c.606G>A1.000
fabG11674054c.615T>C1.000
fabG11674060c.621A>G1.000
fabG11674079p.Pro214Ala1.000
fabG11674105c.666C>T1.000
fabG11674108c.669C>T1.000
fabG11674111c.672G>A1.000
fabG11674114c.675T>G1.000
fabG11674117c.678C>G1.000
fabG11674123c.684T>C1.000
fabG11674129c.690C>T1.000
fabG11674132c.693T>C1.000
fabG11674156c.717C>T1.000
fabG11674171c.732T>C1.000
inhA1674462c.261G>A1.000
inhA1674472p.Val91Leu1.000
inhA1674477c.276G>C1.000
inhA1674480c.279T>C1.000
inhA1674486c.285T>C1.000
inhA1674489c.288G>C1.000
inhA1674501c.300G>A1.000
inhA1674503p.Thr101Ser1.000
inhA1674513c.312C>G1.000
inhA1674542p.Ala114Glu1.000
inhA1674546c.345T>C1.000
inhA1674561c.360C>T1.000
inhA1674570c.369G>C0.933
inhA1674573c.372G>C0.923
inhA1674576c.375T>C0.923
inhA1674579c.378G>C0.923
inhA1674582c.381T>C0.923
inhA1674585c.384T>A0.923
inhA1674588c.387G>C0.923
inhA1674594c.393C>A0.923
inhA1674601c.400C>T0.929
inhA1674609c.408G>C0.929
inhA1674618c.417C>T0.917
inhA1674620p.Pro140Arg0.917
inhA1674624c.423A>T0.923
inhA1674627c.426T>C0.933
inhA1674675c.474C>T0.979
inhA1674703c.502T>C1.000
inhA1674718c.517A>C1.000
inhA1674729c.528G>C1.000
inhA1674756c.555T>C1.000
inhA1674762c.561T>C1.000
inhA1674774c.573A>C1.000
inhA1674777c.576C>G1.000
inhA1674780c.579T>G1.000
inhA1674799p.Ser200Ala1.000
inhA1674804c.603G>A1.000
inhA1674822c.621C>G1.000
inhA1674852c.651G>A1.000
inhA1674858c.657G>A1.000
inhA1674870c.669T>C1.000
inhA1674879c.678T>G1.000
inhA1674882c.681G>C1.000
inhA1674885c.684C>T1.000
inhA1674903c.702T>C1.000
inhA1674904p.Ala235Pro1.000
inhA1674912c.711G>C1.000
inhA1674924c.723G>C1.000
inhA1674927c.726G>C1.000
inhA1674933c.732G>A1.000
inhA1674942c.741T>G1.000
inhA1674945p.Asp248Glu1.000
inhA1674957c.756G>C0.947
inhA1674966c.765T>G0.962
inhA1674977p.Tyr259Phe0.962
inhA1674993c.792G>C0.964
inhA1674999c.798C>T0.967
inhA1675002c.801A>G0.969
rpsA1833512c.-30AC>A1.000
rpsA1833516c.-26A>G1.000
rpsA1833554p.Thr5Ala1.000
rpsA1833589c.48A>T1.000
rpsA1833593p.Ser18Thr1.000
rpsA1833604c.63C>T1.000
rpsA1833610c.69C>A1.000
rpsA1833661c.120A>G0.967
rpsA1833664c.123C>A0.968
rpsA1833694c.153G>T0.971
rpsA1833718c.177C>T0.968
rpsA1833724c.183C>G0.968
rpsA1833727c.186G>C0.968
rpsA1833742c.201A>G0.970
rpsA1833745c.204G>C0.971
rpsA1833754c.213G>A0.971
rpsA1833802c.261A>G1.000
rpsA1833841c.300C>G1.000
rpsA1833847c.306C>G1.000
rpsA1833850c.309C>G1.000
rpsA1833856c.315A>G1.000
rpsA1833874c.333T>C1.000
rpsA1833928c.387G>C1.000
rpsA1833949c.408T>C1.000
rpsA1833979c.438T>C1.000
rpsA1834000c.459G>C1.000
rpsA1834015c.474G>C1.000
rpsA1834024c.483G>A1.000
rpsA1834030c.489C>G1.000
rpsA1834051c.510G>A1.000
rpsA1834102c.561T>G1.000
rpsA1834105c.564C>G1.000
rpsA1834135c.594G>C1.000
rpsA1834148c.607C>T1.000
rpsA1834153c.612T>C1.000
rpsA1834154p.Asn205Gln1.000
rpsA1834157c.616T>C1.000
rpsA1834162c.621A>G1.000
rpsA1834165c.624A>G1.000
rpsA1834174c.633C>T1.000
rpsA1834177c.636A>C1.000
rpsA1834186c.645C>G1.000
rpsA1834189c.648G>C1.000
rpsA1834195c.654G>C1.000
rpsA1834213c.672G>C1.000
rpsA1834222c.681T>C1.000
rpsA1834225c.684C>G1.000
rpsA1834249c.708T>C1.000
rpsA1834261c.720A>G1.000
rpsA1834264c.723G>C1.000
rpsA1834297c.756C>T1.000
rpsA1834303c.762T>G1.000
rpsA1834306c.765T>C1.000
rpsA1834336c.795C>G1.000
rpsA1834339c.798C>T1.000
rpsA1834348c.807T>C1.000
rpsA1834366c.825A>G1.000
rpsA1834369c.828C>G1.000
rpsA1834375c.834G>A1.000
rpsA1834396c.855G>C1.000
rpsA1834411c.870T>C1.000
rpsA1834417c.876G>C1.000
rpsA1834423c.882G>C1.000
rpsA1834451c.910T>C1.000
rpsA1834456c.915T>G1.000
rpsA1834468c.927A>G1.000
rpsA1834489c.948T>C1.000
rpsA1834495c.954G>A0.986
rpsA1834528c.987T>C1.000
rpsA1834546c.1005T>C0.985
rpsA1834609c.1068T>C0.958
rpsA1834615c.1074C>T0.926
rpsA1834618c.1077G>C0.929
rpsA1834633c.1092A>G0.959
rpsA1834639c.1098T>C0.959
rpsA1834690c.1149T>C0.961
rpsA1834732c.1191T>C1.000
rpsA1834747c.1206A>G0.966
rpsA1834751p.Leu404Met0.958
rpsA1834756c.1215G>A0.920
rpsA1834759c.1218A>T0.920
rpsA1834765p.Glu408Asp0.920
rpsA1834766p.Lys409Ala0.920
rpsA1834775p.Ala412Asn0.923
rpsA1834780c.1239A>G0.929
rpsA1834789c.1248T>C0.957
rpsA1834792c.1251G>C0.959
rpsA1834810c.1269C>G0.962
rpsA1834843c.1302G>A0.952
rpsA1834846c.1305C>T0.951
rpsA1834852c.1311C>G0.947
rpsA1834864c.1323T>C0.933
rpsA1834869p.Arg443His0.931
tlyA1917934c.-6T>G0.833
tlyA1917937c.-3G>A0.833
tlyA1917938c.-2G>A0.833
tlyA1917948c.9A>G0.938
tlyA1917965p.Ala9Val0.947
tlyA1917972c.33A>G1.000
tlyA1917975c.36C>G0.973
tlyA1917981c.42G>C0.973
tlyA1917987c.48G>C0.973
tlyA1917996c.57A>C0.973
tlyA1918002p.Gln21His0.973
tlyA1918008c.69C>T0.973
tlyA1918014c.75G>A0.973
tlyA1918022p.Gly28Glu0.973
tlyA1918047c.108G>C0.970
tlyA1918055p.Ala39Val0.966
tlyA1918068c.129C>G1.000
katG2154972c.1140A>G1.000
katG2154992p.Ser374Val1.000
katG2154996c.1116C>G1.000
katG2154999c.1113T>C1.000
katG2155002c.1110C>T1.000
katG2155017c.1095C>G1.000
katG2155032c.1080A>G1.000
katG2155047c.1065G>A1.000
katG2155054p.Tyr353Phe1.000
katG2155056c.1056T>C1.000
katG2155062c.1050A>G1.000
katG2155065c.1047G>T1.000
katG2155068c.1044A>G1.000
katG2155071c.1041A>T1.000
katG2155080c.1032C>G1.000
katG2155572c.540C>G1.000
katG2155581c.531G>T1.000
katG2155596c.516C>G1.000
katG2155601p.Cys171Val1.000
katG2155616p.Val166Ile0.963
katG2155617c.495A>G0.963
katG2155632c.480T>G0.969
katG2155637p.Leu159Ile0.971
katG2155641p.Lys157Asn0.971
katG2155649p.Tyr155His0.973
katG2155680c.432C>G0.971
katG2155691c.421A>G0.971
katG2155704c.408G>C0.967
katG2155716c.396A>G0.964
katG2155722c.390C>G0.958
kasA2518162c.48G>A1.000
kasA2518187p.Ile25Val1.000
kasA2518248p.Ala45Val1.000
kasA2518252c.138C>T1.000
kasA2518279c.165T>C1.000
kasA2518283p.Ala57Pro1.000
kasA2518297c.183C>T1.000
kasA2518300c.186T>C0.973
kasA2518312c.198T>C0.973
kasA2518318c.204C>G0.970
kasA2518323p.Ser70Asn0.969
kasA2518334c.220C>A0.960
kasA2518339c.225C>G0.958
kasA2518348c.234A>G0.958
kasA2518360c.246C>T1.000
kasA2518444c.330T>C0.900
kasA2518447c.333T>G0.900
kasA2518459c.345T>C1.000
kasA2518462c.348A>C0.933
kasA2518468c.354A>G0.933
kasA2518471c.357C>G0.933
kasA2518475c.361A>C0.938
kasA2518480c.366T>C0.944
kasA2518492c.378C>T0.962
kasA2518504c.390T>C0.966
kasA2518506p.Ala131Glu1.000
kasA2518513c.399C>G0.974
kasA2518519c.405G>C1.000
kasA2518534c.420G>C1.000
kasA2518537c.423C>G1.000
kasA2518561c.447T>C1.000
kasA2518567c.453G>T1.000
kasA2518573c.459G>C1.000
kasA2518574p.Ile154Val1.000
kasA2518588c.474T>C1.000
kasA2518591c.477G>C1.000
kasA2518618c.504G>C1.000
kasA2518633c.519G>C1.000
kasA2518642c.528A>G1.000
kasA2518645c.531G>C1.000
kasA2518648c.534C>T1.000
kasA2518672c.558G>C1.000
kasA2518681c.567C>T1.000
kasA2518684c.570C>A1.000
kasA2518711c.597A>G1.000
kasA2518714c.600A>T1.000
kasA2518735c.621C>A1.000
kasA2518744c.630C>T1.000
kasA2518747c.633C>G1.000
kasA2518756c.642G>C1.000
kasA2518783c.669T>C1.000
kasA2518789c.675G>T1.000
kasA2518795c.681C>G1.000
kasA2518798c.684G>C1.000
kasA2518816c.702C>T1.000
kasA2518822c.708C>T1.000
kasA2518825c.711T>C1.000
kasA2518855c.741C>G1.000
kasA2518856p.Ile248Leu1.000
kasA2518864c.750G>C1.000
kasA2518885c.771T>C1.000
kasA2518894c.780G>A0.984
kasA2518903c.789C>T0.982
kasA2518906c.792A>G0.982
kasA2518910c.796C>T0.983
kasA2518939c.825T>C0.980
kasA2518942c.828T>C0.980
kasA2518951c.837G>A0.979
kasA2518960c.846C>G1.000
kasA2518963c.849T>C1.000
kasA2518969c.855T>G1.000
kasA2518978c.864T>C1.000
kasA2518979c.865A>C1.000
kasA2518990c.876T>G1.000
kasA2518993c.879C>G1.000
kasA2519008c.894C>G1.000
kasA2519011c.897G>C1.000
kasA2519017c.903G>C1.000
kasA2519281c.1167G>T1.000
kasA2519293p.Asp393Glu1.000
kasA2519295p.Tyr394Phe1.000
kasA2519302c.1188C>T1.000
kasA2519305c.1191A>C1.000
kasA2519306p.Val398Ile1.000
kasA2519323c.1209G>T1.000
kasA2519329c.1215C>T1.000
kasA2519332c.1218C>T1.000
kasA2519335c.1221C>T1.000
kasA2519347c.1233T>C1.000
kasA2519359c.1245T>C1.000
kasA25193641250G>A1.000
ahpC2726243c.51T>G0.933
ahpC2726244c.52C>T0.933
ahpC2726249c.57C>T0.933
ahpC2726255c.63T>C0.938
ahpC2726258c.66C>T0.938
ahpC2726264c.72C>G0.952
ahpC2726303c.111T>C1.000
ahpC2726304p.Ile38Val1.000
ahpC2726311p.Ser40Asn1.000
ahpC2726315p.Asp41Glu1.000
ahpC2726318p.Glu42Asp1.000
ahpC2726324c.132A>G1.000
ahpC2726336c.144G>C0.981
ahpC2726348c.156T>C1.000
ahpC2726354c.162G>C1.000
ahpC2726357c.165A>G1.000
ahpC2726366c.174G>C1.000
ahpC2726378c.186T>G1.000
ahpC2726393c.201G>C1.000
ahpC2726397p.Ser69Gly1.000
ahpC2726408c.216T>C1.000
ahpC2726430p.Ala80Thr0.971
ahpC2726441c.249G>C0.958
ahpC2726444c.252G>A0.952
ahpC2726447c.255T>C0.952
ahpC2726450c.258G>C0.952
ahpC2726453c.261T>C0.952
ahpC2726467p.Ala92Val0.917
ahpC2726471c.279T>C0.917
folC2746648c.951C>G1.000
folC2746654c.945G>C1.000
folC2746657c.942A>G1.000
folC2746663c.936A>G1.000
folC2746677p.Ser308Ala1.000
folC2746678c.921A>G1.000
folC2746681c.918G>C1.000
folC2746684c.915G>C1.000
folC2746689p.Leu304Val1.000
folC2746728c.871A>G1.000
folC2746744c.855A>C1.000
folC2746747c.852C>G1.000
folC2746753c.846G>C1.000
folC2746771c.828T>C1.000
folC2747020c.579G>C1.000
folC2747023c.576G>C1.000
folC2747026c.573G>C1.000
folC2747032c.567T>C1.000
folC2747035c.564G>A1.000
folC2747041c.558C>G1.000
folC2747059c.540A>T1.000
folC2747065c.534G>A1.000
folC2747071c.528G>A1.000
folC2747086c.513T>G1.000
folC2747089c.510C>G0.976
folC2747107c.492C>G0.978
folC2747110c.489A>G0.978
folC2747113c.486G>C0.978
folC2747116c.483C>G0.980
folC2747221c.378C>T0.963
folC2747230c.369G>C0.963
folC2747239c.360A>G1.000
folC2747263c.336G>T0.967
folC2747275c.324A>G0.962
folC2747278c.321G>C0.960
folC2747289p.Pro104Val0.960
folC2747290c.309T>C0.960
folC2747302c.297T>C0.960
folC2747314c.285T>G0.960
folC2747359c.240G>C0.929
folC2747371c.228G>C0.938
folC2747386c.213G>C0.938
folC2747389c.210C>G0.941
folC2747395c.204A>G0.947
folC2747398c.201G>A0.947
folC2747404c.195C>G0.957
folC2747414p.Arg62Leu1.000
folC2747419c.180G>C1.000
folC2747422c.177C>T1.000
folC2747425c.174G>A1.000
folC2747439p.Met54Leu1.000
folC2747442c.157A>G1.000
folC2747454c.145G>T1.000
folC2747467p.Asp44Glu1.000
folC2747491c.108T>C1.000
folC2747497c.102G>C1.000
folC2747500c.99T>C0.970
folC2747503c.96A>G1.000
folC2747509c.90A>G1.000
folC2747520c.79G>A1.000
folC2747521c.78G>C1.000
folC2747524c.75C>A1.000
folC2747539c.60A>T1.000
thyX3067230p.Thr239Ser0.917
thyX3067247c.699G>T1.000
thyX3067250c.696C>G1.000
thyX3067277c.669G>T1.000
thyX3067282p.Val222Ser1.000
thyX3067284p.Ala221Asp1.000
thyX3067292c.654C>T1.000
thyX3067295c.651G>A1.000
thyX3067304c.642T>C1.000
thyX3067316c.630T>C1.000
thyX3067325c.621T>C0.983
thyX3067331c.615G>A1.000
thyX3067355c.591T>G1.000
thyX3067373c.573G>C1.000
thyX3067388c.558G>A1.000
thyX3067391c.555C>G1.000
thyX3067394c.552C>A1.000
thyX3067406c.540T>C1.000
thyX3067427c.519C>G0.984
thyX3067430c.516G>A0.984
thyX3067439c.507T>C0.983
thyX3067445c.501G>T0.983
thyX3067451c.495C>T0.981
thyX3067457c.489G>C0.979
thyX3067465p.Ile161Val0.968
thyX3067466c.480C>G0.968
thyX3067475c.471T>C0.967
thyX3067493c.453T>C0.957
thyX3067504p.Ala148Thr0.944
thyX3067510c.436G>A0.941
thyX3067515p.Ser144Thr0.941
thyX3067530p.Ala139Gly0.929
thyX3067691c.255G>A1.000
thyX3067709c.237C>G1.000
thyX3067718c.228G>C1.000
thyX3067721c.225A>G1.000
thyX3067727c.219T>G1.000
thyX3067742c.204T>A1.000
thyX3067762p.Arg62Lys1.000
thyX3067781c.165G>C1.000
thyX3067784c.162G>A1.000
thyX3067788p.Lys53Arg1.000
thyX3067793c.153A>G1.000
thyX3067814c.132A>G1.000
thyX3067817c.129G>A1.000
thyX3067820c.126G>C1.000
thyX3067832c.114G>A1.000
thyX3067838c.108G>C1.000
thyX3067849p.Pro33Ser0.960
thyX3067850c.96T>G1.000
thyX3067874c.72G>C1.000
thyX3067886c.60T>C1.000
thyX3067891p.Ala19Thr1.000
thyX3067898p.Asp16Glu1.000
thyX3067916p.Gln10His1.000
thyX3067925c.21C>T1.000
thyX3067931c.15C>G1.000
thyX3067939p.Glu3Gln1.000
thyX3067956c.-11A>G1.000
thyA3073898p.Ala192Ser1.000
thyA3073902c.570G>T1.000
thyA3073929c.543A>G1.000
thyA3073932c.540G>A1.000
thyA3073947c.525C>G1.000
thyA3073953c.519A>G1.000
thyA3073956c.516C>G1.000
thyA3073962c.510C>G1.000
thyA3073977c.495T>C1.000
thyA3073989c.483A>G1.000
thyA3073997c.475G>A1.000
thyA3074004c.468A>G1.000
thyA3074031c.441A>G0.986
thyA3074037c.435G>C0.986
thyA3074045c.427G>A0.986
thyA3074053p.Arg140Gln0.985
thyA3074057p.Glu139Pro0.985
thyA3074061p.Glu137Asp0.986
thyA3074091c.381G>C0.973
thyA3074123p.Asp117Asn0.967
thyA3074127c.345C>A0.966
thyA3074130c.342C>G0.965
thyA3074133c.339G>A0.965
thyA3074151c.321C>T0.957
thyA3074157c.315G>C0.952
thyA3074160c.312T>A0.952
thyA3074163c.309A>G0.950
thyA3074172c.300C>G0.971
thyA3074175c.297T>C0.969
thyA3074184c.288T>C0.923
thyA3074247c.225G>A1.000
thyA3074252p.Glu74Gln1.000
thyA3074256c.216C>T1.000
thyA3074262c.210A>G1.000
thyA3074268c.204A>G1.000
thyA3074274c.198A>G1.000
thyA3074283c.189C>T1.000
thyA3074286c.186A>G1.000
thyA3074297c.175G>A1.000
thyA3074307c.165T>C1.000
thyA3074313c.159T>C1.000
thyA3074334c.138A>G1.000
thyA3074349c.123A>G1.000
thyA3074355c.117C>G1.000
thyA3074360c.112A>G1.000
thyA3074361c.111A>G1.000
thyA3074369c.103G>C1.000
thyA3074370p.Met34Ile1.000
thyA3074391c.81G>C1.000
thyA3074397c.75T>G1.000
thyA3074409c.63G>A1.000
thyA3074423p.Pro17Ala1.000
thyA3074426p.Thr16Ser1.000
thyA3074444p.Phe10Leu1.000
fbiA3640207c.-336T>C1.000
fbiA3640212c.-331C>G1.000
fbiA3640217c.-326T>C1.000
fbiA3640225c.-318G>T1.000
fbiA3640232c.-311T>C1.000
fbiA3640247c.-296T>G1.000
fbiA3640260c.-283T>C1.000
fbiA3640261c.-282C>T1.000
fbiA3640269c.-274A>C1.000
fbiA3640282c.-261C>G1.000
fbiA3640298c.-245A>G1.000
fbiA3640318c.-225A>T1.000
fbiA3640365c.-178C>G1.000
fbiA3640392c.-151A>G1.000
fbiA3640393c.-150A>C1.000
fbiA3640394c.-149G>A1.000
fbiA3640400c.-143G>C1.000
fbiA3640402c.-141C>G1.000
fbiA3640403c.-140G>C1.000
fbiA3640413c.-130T>C1.000
fbiA3640414c.-129G>A1.000
fbiA3640416c.-127G>T1.000
fbiA3640433c.-110T>C1.000
fbiA3640442c.-101A>G1.000
fbiA3640445c.-98A>C1.000
fbiA3640541c.-2A>G1.000
fbiA3640560c.18G>C1.000
fbiA3640562p.Ala7Val1.000
fbiA3640566c.24T>G1.000
fbiA3640587c.45C>T0.963
fbiA3640591c.49C>T0.963
fbiA3640606c.64C>T0.963
fbiA3640620c.78C>A0.963
fbiA3641256c.714A>G1.000
fbiA3641286c.744C>A1.000
fbiA3641288p.Glu249Gly1.000
fbiA3641292c.750G>A1.000
fbiA3641314p.Thr258Ala1.000
fbiA3641319c.777C>T1.000
fbiA3641322c.780T>C1.000
fbiA3641328c.786T>A1.000
fbiA3641352c.810C>G1.000
fbiA3641355c.813T>G1.000
fbiA3641374p.Ala278Ser1.000
fbiA3641379c.837G>C1.000
fbiA3641380p.Cys280Thr1.000
fbiA3641383p.Ala281Thr1.000
fbiA3641391c.849G>C1.000
fbiA3641397c.855G>C1.000
alr3840213p.Arg403Leu1.000
alr3840225p.Thr399Ser1.000
alr3840230c.1191A>C0.963
alr3840236c.1185T>C0.966
alr3840242c.1179G>A0.969
alr3840248c.1173G>T0.970
alr3840272c.1149G>C0.977
alr3840275c.1146A>C0.977
alr3840293c.1128A>C0.975
alr3840296c.1125C>G0.975
alr3840305c.1116A>G0.975
alr3840313p.Ile370Ala0.970
alr3840317c.1104C>G0.970
alr3840328c.1093A>G0.969
alr3840332c.1089C>G0.967
alr3840341c.1080G>A0.964
alr3840353c.1068A>G0.957
alr3840358p.Leu355Val0.957
alr3840362c.1059C>G0.958
alr3840371c.1050C>G0.967
alr3840382p.Met347Val1.000
alr3840403c.1018G>T0.938
alr3840404c.1017C>G0.929
alr3840407c.1014C>G1.000
alr3840410c.1011A>G1.000
alr3840413c.1008G>C1.000
alr3840418p.Cys335Arg1.000
alr3840424c.997T>C1.000
alr3840443c.978C>G1.000
alr3840446c.975C>A1.000
alr3840473c.948G>A1.000
alr3840476c.945T>G1.000
alr3840502p.Leu307Val1.000
alr3840504p.Asn306Thr1.000
alr3840513p.Arg303His1.000
alr3840515c.906T>C0.973
alr3840527c.894T>G1.000
alr3840536c.885A>G1.000
alr3841082c.339C>G1.000
alr3841100c.321T>C1.000
alr3841106c.315A>G1.000
alr3841112c.309A>G1.000
alr3841115c.306A>G1.000
alr3841123c.298G>A1.000
alr3841127c.294T>C1.000
embC4240078c.216A>G0.909
embC4240087c.225T>C0.926
embC4240093c.231C>T0.964
embC4240105p.Asp81Glu1.000
embC4240106c.244T>C1.000
embC4240123c.261C>G1.000
embC4240128p.Gln89Arg1.000
embC4240150c.288A>G1.000
embC4240151p.Ser97Pro1.000
embC4240171c.309G>C1.000
embC4240175c.313T>C1.000
embC4240183c.321A>G1.000
embC4240201c.339G>C1.000
embC4240204c.342T>C1.000
embC4240207p.Lys115Asn1.000
embC4240216c.354T>C1.000
embC4240228c.366G>C1.000
embC4240229p.Leu123Ile1.000
embC4240234c.372A>G1.000
embC4240237c.375G>C1.000
embC4240255c.393G>A1.000
embC4240258c.396T>G1.000
embC4240267c.405T>C1.000
embC4240277p.Leu139Val1.000
embC4240420c.558T>C1.000
embC4240427p.Ser189Gly1.000
embC4240441c.579C>T1.000
embC4240444c.582C>G1.000
embC4240471c.609C>T1.000
embC4240475p.Ala205Ser1.000
embC4240484p.Ala208Thr1.000
embC4240489c.627A>G1.000
embC4240495c.633T>C1.000
embC4240512p.Ser217Thr1.000
embC4240516c.654G>C1.000
embC4240519c.657T>C1.000
embC4240543c.681G>C1.000
embC4240561c.699C>G1.000
embC4240671p.Thr270Ile1.000
embC4240678c.816T>G0.966
embC4240685p.Thr275Ala1.000
embC4240693c.831T>C0.972
embC4240699c.837C>A1.000
embC4240717c.855T>C0.981
embC4240726c.864G>C0.983
embC4240741c.879C>T0.967
embC4240777c.915G>A0.985
embC4240780c.918T>C1.000
embC4240783c.921G>C0.984
embC4240795c.933C>G0.970
embC4240801c.939C>T0.970
embC4240831c.969T>C0.985
embC4240858c.996G>A1.000
embC4240859p.Leu333Met1.000
embC4240867c.1005T>G1.000
embC4240870c.1008T>C1.000
embC4240876c.1014C>T1.000
embC4240879c.1017G>C1.000
embC4240885c.1023T>C1.000
embC4240886p.Ile342Val1.000
embC4240897c.1035C>G1.000
embC4240900c.1038A>G1.000
embC4240918c.1056G>C1.000
embC4240921c.1059C>G1.000
embC4240924c.1062C>G1.000
embC4240934p.Val358Leu1.000
embC4240945c.1083T>C1.000
embC4240954c.1092T>C1.000
embC4240960c.1098G>T1.000
embC4240963c.1101G>C1.000
embC4240966c.1104G>C1.000
embC4240978c.1116G>A0.909
embC4240979p.Thr373His0.909
embC4240987c.1125G>C0.941
embC4240990c.1128A>T0.944
embC4241017c.1155T>C0.983
embC4241023c.1161T>G0.983
embC4241026c.1164C>G0.983
embC4241039p.Asp393Asn0.973
embC4241050c.1188T>G0.975
embC4241056c.1194C>G0.975
embC4241095c.1233C>T0.975
embC4241107c.1245G>C0.977
embC4241140c.1278A>G0.988
embC4241153p.Ile431Leu1.000
embC4241161c.1299C>G0.987
embC4241162c.1300T>C0.987
embC4241167c.1305C>G0.987
embC4241185c.1323G>C0.986
embC4241197c.1335G>C0.986
embC4241230c.1368A>G0.982
embC4241319p.Pro486Leu1.000
embC4241326c.1464T>C1.000
embC4241329c.1467T>C1.000
embC4241332c.1470T>C1.000
embC4241338c.1476C>G1.000
embC4241341c.1479C>T1.000
embC4241344c.1482G>C0.933
embC4241352p.Ile497Thr0.950
embC4241361p.Asn500Ser0.969
embC4241365c.1503C>G0.970
embC4241380c.1518A>C0.975
embC4241383c.1521G>C0.951
embC4241386c.1524C>G0.952
embC4241392c.1530G>C0.979
embC4241401c.1539C>T0.981
embC4241416c.1554C>A0.983
embC4241449c.1587C>G0.980
embC4241453p.Ile531Val0.980
embC4241470c.1608C>G0.978
embC4241671c.1809T>G0.941
embC4241689c.1827G>C0.941
embC4241692c.1830C>G0.941
embC4241695c.1833T>G0.944
embC4241704c.1842C>G0.947
embC4241707c.1845G>C0.947
embC4241710c.1848G>A0.947
embC4241713c.1851G>C0.950
embC4241719c.1857G>C0.963
embC4241728c.1866C>T0.966
embC4241741p.Val627Ile0.971
embC4241750p.Leu630Met0.975
embC4241755c.1893C>G0.977
embC4241761c.1899G>C0.977
embC4241788c.1926C>T1.000
embC4241791c.1929G>C1.000
embC4241797c.1935C>T1.000
embC4241809c.1947A>G1.000
embC4241818c.1956C>T1.000
embC4241821c.1959G>A1.000
embC4241824c.1962T>C1.000
embC4241836c.1974A>C1.000
embC4241845c.1983T>C1.000
embC4241854c.1992A>G1.000
embC4241857c.1995C>G1.000
embC4242710p.Gln950Glu1.000
embC4242715c.2853T>C1.000
embC4242721c.2859G>T1.000
embC4242740c.2878C>T1.000
embC4242748c.2886A>G1.000
embC4242764p.Val968Leu1.000
embC4242773c.2911C>T1.000
embC4242779p.Asn973Asp1.000
embC4242791p.Ala977Ser1.000
embC4242794p.Ala978Lys1.000
embC4242823c.2961G>C1.000
embC4242838c.2976C>G1.000
embC4242844c.2982A>G1.000
embC4242847c.2985C>A1.000
embC4242859c.2997C>T1.000
embC4242863p.Tyr1001Asn1.000
embC4242871c.3009C>T1.000
embC4242873p.Asp1004Val1.000
embC4242883c.3021C>G1.000
embC4242885p.Lys1008Thr1.000
embC4242919c.3057A>G0.974
embC4242925c.3063C>T1.000
embC4242928c.3066A>T1.000
embC4242931c.3069G>C1.000
embC4242934c.3072G>C1.000
embC4242940c.3078T>C1.000
embC4242941p.His1027Lys1.000
embC4242946c.3084T>C1.000
embC4242952c.3090T>C1.000
embC4242958c.3096G>C1.000
embC4242974c.3112C>T0.950
embC4242980p.Met1040Leu0.950
embC4242988c.3126A>G0.950
embC4242991c.3129C>G0.950
embC4243006c.3144C>T0.950
embC4243012c.3150A>G0.950
embC4243024c.3162T>C0.923
embC4243025c.3163A>C0.917
embA4243222c.-11C>G0.971
embA4243228c.-5G>C0.974
embA4243240p.His3Leu1.000
embA4243271c.39A>C1.000
embA4243279p.Ala16Val1.000
embA4243301c.69G>C1.000
embA4243304c.72T>A1.000
embA4243311c.79C>T1.000
embA4243318p.Gly29Ala1.000
embA4243320p.Ile30Leu1.000
embA4243334c.102T>G1.000
embA4243343p.Asn37Lys1.000
embA4243346c.114A>G1.000
embA4243349c.117C>G1.000
embA4243352c.120C>G1.000
embA4243362p.Phe44Leu1.000
embA4244042c.810C>T1.000
embA4244051c.819T>C1.000
embA4244061p.Leu277Asn1.000
embA4244070p.Val280Ile1.000
embA4244078c.846G>C1.000
embA4244079p.Val283Ile1.000
embA4244084c.852C>G0.923
embA4244087c.855G>C1.000
embA4244099c.867T>C0.963
embA4244102c.870A>C1.000
embA4244117c.885G>C1.000
embA4244120c.888T>C1.000
embA4244132c.900G>C1.000
embA4244153307YTS>307YLG1.000
embA4244165c.933T>G1.000
embA4244170p.Gln313Arg1.000
embA4244178p.Ala316Ser1.000
embA4244198c.966C>A1.000
embA4244207c.975C>G1.000
embA4244213c.981C>G1.000
embA4244219c.987C>G1.000
embA4244228c.996A>G1.000
embA4244283p.Pro351Lys1.000
embA4244291c.1059G>C1.000
embA4244306c.1074G>C1.000
embA4244308p.Val359Ala1.000
embA4244312c.1080T>G1.000
embA4244316p.Phe362Leu1.000
embA4244324c.1092T>G1.000
embA4244327c.1095T>C1.000
embA4244340p.Ser370Ala1.000
embA4244345c.1113C>G1.000
embA4244372c.1140T>A0.986
embA4244390c.1158G>A0.984
embA4244396c.1164T>C0.983
embA4244408c.1176G>C0.981
embA4244415c.1183T>C0.980
embA4244426c.1194G>C0.972
embA4244645c.1413T>C0.833
embA4244648c.1416G>C0.909
embA4244649p.Asp473Ser0.909
embA4244663c.1431C>G0.947
embA4244669c.1437G>C0.947
embA4244675c.1443A>G0.947
embA4244681c.1449A>G0.947
embA4244684c.1452C>G0.947
embA4244702c.1470C>G0.947
embA4244705c.1473G>C0.947
embA4244708c.1476C>G0.947
embA4244714c.1482C>G0.947
embA4244747c.1515T>C0.923
embA4244750c.1518C>G0.900
embA4244753c.1521G>C0.900
embA4244757c.1525A>T0.900
embA4244762c.1530C>T0.900
embA4244764p.Val511Ala0.900
embA4244780c.1548C>G1.000
embA4244783c.1551C>G1.000
embA4244786c.1554G>A1.000
embA4244792c.1560G>C1.000
embA4244802p.Leu524Met1.000
embA4244805c.1573C>T1.000
embA4244808p.Phe526Leu1.000
embA4244822c.1590G>A1.000
embA4244823p.Val531Met1.000
embA4244856p.Ala542Pro1.000
embA4244885c.1653A>G1.000
embA4244897c.1665T>G1.000
embA4244903c.1671G>C1.000
embA4244919c.1687C>T1.000
embA4244930c.1698G>C1.000
embA4244933c.1701A>G1.000
embA4244939c.1707G>A1.000
embA4244946p.Val572Ile1.000
embA4244960c.1728A>G1.000
embA4245047c.1815G>C1.000
embA4245051p.Val607Ile1.000
embA4245083c.1851A>C1.000
embA4245101c.1869G>C0.986
embA4245110c.1878C>T0.986
embA4245137c.1905T>C0.987
embA4245149c.1917C>G0.987
embA4245182c.1950T>C0.986
embA4245186p.Thr652Ala0.985
embA4245194c.1962G>A0.979
embA4245195p.Ile655Val0.979
embA4245200c.1968C>G0.979
embA4245206c.1974A>C0.980
embA4245207c.1975T>C0.980
embA4245215c.1983A>C0.984
embA4245224c.1992T>C0.986
embA4245248c.2016G>A0.983
embA4245257c.2025A>G0.982
embA4245263c.2031A>G0.983
embA4245281c.2049C>G0.983
embA4245285c.2053T>C0.983
embA4245293c.2061T>A0.980
embA4245296c.2064G>C0.977
embA4245299c.2067A>G0.977
embA4245300c.2068C>T0.978
embA4245311c.2079C>T0.982
embA4245326c.2094C>G0.979
embA4245327p.Ala699Leu0.979
embA4245345p.Met705Leu0.981
embA4245355p.Ala708Gly0.982
embA4245368c.2136T>C0.980
embA4245375p.Leu715Met0.978
embA4245402p.Thr724Ala1.000
embA4245413p.Ser727Arg1.000
embA4245414c.2183 2184insAT1.000
embB4246730p.Ser73Thr1.000
embB4246748p.Phe79Leu1.000
embB4246762c.249G>T1.000
embB4246768c.255C>T1.000
embB4246771p.Asp86Glu1.000
embB4246782p.Ala90Gly1.000
embB4246784p.Met91Leu1.000
embB4246789c.276A>G1.000
embB4246792c.279C>G0.929
embB4246793p.Ala94Gln0.929
embB4246794r.281c>ca1.000
embB4246828c.315A>G1.000
embB4246843c.330T>C1.000
embB4246844c.331T>C1.000
embB4246853p.Leu114Met1.000
embB4246871p.Ala120Ser1.000
embB4246879c.366C>G1.000
embB4246882c.369G>C1.000
embB4246894c.381C>T1.000
embB4246910c.397T>C1.000
embB4247033p.Ser174Gly0.974
embB4247062c.549G>C0.965
embB4247089c.576G>C0.984
embB4247095c.582G>A0.983
embB4247104c.591G>A0.982
embB4247113c.600G>A0.978
embB4247114p.Ala201Lys0.978
embB4247117p.Val202Leu0.978
embB4247137c.624C>G0.982
embB4247140c.627G>C0.982
embB4247150p.Arg213Thr0.974
embB4247155c.642G>A0.974
embB4247179p.Ile222Met0.966
embB4247180p.Ile223Val0.966
embB4247185c.672G>C0.966
embB4247212c.699G>C0.947
embB4247213p.Ile234Val0.947
embB4247219c.706T>C1.000
embB4247348p.Thr279Leu1.000
embB4247353c.840C>T1.000
embB4247355p.Ala281Gly1.000
embB4247365c.852A>C1.000
embB4247370p.Gly286Ala1.000
embB4247386c.873T>C1.000
embB4247398c.885G>C1.000
embB4247401c.888T>C1.000
embB4247404c.891G>C1.000
embB4247407c.894G>C1.000
embB4247440c.927C>G1.000
embB4247470c.957T>C1.000
embB4247497c.984T>C1.000
embB4247500c.987C>G1.000
embB4247512c.999T>C1.000
embB4247554c.1041T>C1.000
embB4247555p.Leu348Ile1.000
embB4247566c.1053C>G1.000
embB4247579p.Ala356Phe1.000
embB4247590c.1077A>G1.000
embB4247608c.1095G>C1.000
embB4247611c.1098G>C1.000
embB4247632c.1119C>G1.000
embB4247645p.Glu378Thr1.000
embB4247648p.Ala379Ser1.000
embB4247657p.Pro382Ala1.000
embB4247671c.1158G>A1.000
embB4247679p.Met389Thr1.000
embB4247684c.1171T>C1.000
embB4247722c.1209G>C0.981
embB4247725c.1212G>C0.981
embB4247728c.1215G>A0.981
embB4247743c.1230C>G0.984
embB4247761c.1248T>C0.985
embB4247779c.1266C>G0.983
embB4247785c.1272G>C0.984
embB4247800c.1287A>C0.984
embB4247815c.1302C>G0.976
embB4247816p.Val435Ile0.976
embB4247819p.Val436Ile0.976
embB4247830c.1317A>G0.983
embB4247836c.1323A>G0.984
embB4247839c.1326G>C0.984
embB4247858c.1345C>T1.000
embB4247899p.Met462Ile1.000
embB4247911p.Leu466Phe1.000
embB4247915p.Arg468Lys1.000
embB4247920c.1407T>C1.000
embB4247923c.1410T>C1.000
embB4247932c.1419C>G1.000
embB4247948p.Val479Leu1.000
embB4247975p.Val488Ile1.000
embB4247989c.1476G>C1.000
embB4248001c.1488C>T1.000
embB4248007c.1494C>G1.000
embB4248042p.Ala510Gly1.000
embB4248052c.1539G>T1.000
embB4248055c.1542G>C1.000
embB4248058c.1545C>T1.000
embB4248061c.1548G>A1.000
embB4248064c.1551G>C1.000
embB4248070c.1557T>C1.000
embB4248094c.1581C>T1.000
embB4248130c.1617G>C1.000
embB4248142c.1629T>C1.000
embB4248143c.1630T>C1.000
embB4248154c.1641G>T1.000
embB4248157c.1644A>T1.000
embB4248163c.1650G>A1.000
embB4248169c.1656C>T1.000
embB4248175c.1662G>A1.000
embB4248178c.1665C>T1.000
embB4248206p.Ser565Gly0.969
embB4248214c.1701C>G0.980
embB4248217c.1704C>G0.980
embB4248220c.1707A>G0.979
embB4248233c.1720C>T0.981
embB4248252p.Gly580Ala0.981
embB4248266c.1753C>T0.982
embB4248277c.1764G>C0.982
embB4248280c.1767C>G0.982
embB4248316c.1803C>G1.000
embB4248319c.1806A>G1.000
embB4248334c.1821C>G1.000
embB4248349c.1836G>A1.000
embB4248358c.1845C>G1.000
embB4248361c.1848A>G1.000
embB4248379c.1866G>A1.000
embB4248407p.Leu632Val1.000
embB4248412p.Phe633Leu1.000
embB4248416p.Leu635Met1.000
embB4248424c.1911G>A1.000
embB4248430c.1917T>C1.000
embB4248448c.1935C>T1.000
embB4248457c.1944T>C1.000
embB4248472c.1959T>C1.000
embB4248496c.1983G>C1.000
embB4248504p.Asp664Ala1.000
embB4248508c.1995G>A1.000
embB4248514c.2001A>G1.000
embB4248535c.2022C>G1.000
embB4248649c.2136T>C1.000
embB4248660p.Ala716Val1.000
embB4248670c.2157C>T1.000
embB4248676c.2163C>G1.000
embB4248682c.2169G>C1.000
embB4248697c.2184A>C1.000
embB4248706c.2193G>C1.000
embB4248731p.Val740Leu1.000
embB4248742c.2229T>C1.000
embB4248757c.2244A>C1.000
embB4248772c.2259A>G1.000
embB4248880c.2367G>C0.979
embB4248892c.2379A>G1.000
embB4248898c.2385A>G1.000
embB4248904c.2391G>C1.000
embB4248907c.2394G>C1.000
embB4248964c.2451G>C1.000
embB4248967c.2454G>C1.000
embB4248973c.2460G>A1.000
embB4248976c.2463G>C1.000
embB4248978p.Thr822Lys1.000
embB4248981p.Ser823Thr1.000
embB4248983p.Pro824Ala1.000
embB4248997c.2484T>A1.000
embB4249000c.2487T>G1.000
embB4249276c.2763A>C0.917
embB4249282c.2769A>G0.917
embB4249285c.2772G>A0.917
embB4249288c.2775G>A0.917
embB4249294c.2781G>A0.917
embB4249297c.2784G>C0.917
embB4249303c.2790C>A0.923
embB4249306c.2793C>T0.923
embB4249312c.2799C>G0.929
embB4249321c.2808A>C0.929
embB4249323p.Ala937Asp0.929
embB4249339c.2826T>C0.973
embB4249348c.2835G>C1.000
embB4249360c.2847G>C1.000
embB4249369c.2856T>C1.000
embB4249375c.2862G>C1.000
embB4249381c.2868A>C1.000
embB4249417c.2904A>G1.000
embB4249429c.2916C>G1.000
embB4249432c.2919A>G1.000
embB4249433c.2920C>T1.000
embB4249444c.2931T>C1.000
embB4249447c.2934G>C1.000
embB4249453c.2940G>C1.000
embB4249456c.2943G>C1.000
embB4249459c.2946G>A1.000
embB4249474c.2961C>T1.000
embB4249486c.2973T>G1.000
embB4249487c.2974T>C1.000
embB4249492c.2979C>G1.000
embB4249501c.2988C>T1.000
embB4249521p.Ala1003Val1.000
embB4249525c.3012T>C1.000
embB4249529p.Ile1006Val1.000
embB4249532p.Ala1007Thr1.000
embB4249540c.3027C>T1.000
embB4249546c.3033G>A1.000
embB4249568p.Ser1019Asn1.000
embB4249573c.3060T>C1.000
embB4249594c.3081G>C1.000
embB4249607p.Thr1032Val1.000
embB4249618c.3105C>G1.000
embB4249624c.3111C>T1.000
embB4249627c.3114G>C1.000
embB4249640c.3127T>C1.000
embB4249648c.3135G>C1.000
embB4249654c.3141C>T1.000
embB4249657c.3144C>G1.000
embB4249663c.3150C>G1.000
embB4249666c.3153C>T1.000
embB4249669c.3156C>T1.000
embB4249675c.3162C>G1.000
embB4249693c.3180T>C1.000
embB4249699c.3186T>A1.000
embB4249702c.3189C>A1.000
embB4249703c.3190C>T1.000
embB4249711c.3198G>A1.000
embB4249735c.3222T>G1.000
embB4249741c.3228C>A1.000
embB4249744c.3231G>A1.000
embB4249750p.Glu1079Asp1.000
embB4249751c.3238T>C1.000
embB4249774c.3261C>A1.000
embB4249775c.3262C>T1.000
embB4249783c.3270A>G1.000
ethA4326298c.1176C>T0.913
ethA4326304c.1170G>C0.913
ethA4326322c.1152A>G0.913
ethA4326331c.1143G>C0.955
ethA4326337c.1137G>A0.955
ethA4326343c.1131G>A0.955
ethA4326346c.1128G>C0.955
ethA4326352c.1122A>C0.955
ethA4326380p.Thr365Lys0.950
ethA4326459p.Ile339Val1.000
ethA4326469c.1005A>G1.000
ethA4326475c.999C>A1.000
ethA4326481c.993G>A1.000
ethA4326484c.990A>T1.000
ethA4326487c.987T>G1.000
ethA4326490c.984G>A1.000
ethA4326507p.Thr323Ser1.000
ethA4326510p.Ala322Pro1.000
ethA4326520p.Glu318Asp1.000
ethA4326523c.951A>G1.000
ethA4326535c.939C>G1.000
ethA4326556c.918A>G1.000
ethA4326563p.Ala304Gly1.000
ethA4326565c.909C>A1.000
ethA4326591c.883A>G1.000
ethA4326598c.876T>C1.000
ethA4326610c.864G>C1.000
ethA4326613c.861G>A0.980
ethA4326628c.846G>A1.000
ethA4326874p.Lys200Asn1.000
ethA4326880c.594G>A1.000
ethA4326886c.588G>A1.000
ethA4326895c.579C>T1.000
ethA4326901c.573C>A1.000
ethA4326907c.567C>A1.000
ethA4326913c.561C>G1.000
ethA4326919c.555T>G0.956
ethA4326928c.546G>T1.000
ethA4326950p.Ala175Gly1.000
ethA4326952p.Asp174Glu1.000
ethA4326996p.Pro160Ala1.000
ethA4326997c.477C>A1.000
ethA4327001p.Val158Ala1.000
ethA4327006c.468A>G1.000
ethA4327010p.Glu155Ala1.000
ethA4327014p.Ser154Ala1.000
ethA4327020p.Ala152Pro1.000
ethA4327021c.453G>A1.000
ethA4327025p.Arg150Lys1.000
ethA4327033c.441G>A1.000
ethA4327041p.Glu145Gln1.000
ethA4327042p.Asp144Glu1.000
ethA4327054c.420G>A1.000
ethA4327306c.168G>A0.941
ethA4327318c.156T>G0.941
ethA4327327c.147A>G0.941
ethA4327330c.144G>A0.941
ethA4327335c.139A>G0.941
ethA4327336c.138A>G0.941
ethA4327356p.Ser40Ala0.923
ethA4327359p.Glu39Ser0.962
ethA4327390c.84C>G0.943
ethA4327396c.78A>G0.943
ethA4327408c.66G>A0.943
ethA4327423c.51G>C0.957
ethA4327426c.48A>G0.950
ethA4327432c.42G>A0.944
ethA4327435c.39T>A0.944
ethA4327438c.36A>C0.944
ethA4327441c.33G>C0.944
ethA4327449p.Ile9Val0.944
ethA4327453c.21A>G0.944
ethA4327459c.15G>A0.944
ethA4327462c.12G>A0.944
ethA4327477c.-4A>T0.933
ethR4327671c.123G>C1.000
ethR4327680c.132T>C1.000
ethR4327695c.147T>C1.000
ethR4327707c.159C>G1.000
ethR4327710c.162C>A1.000
ethR4327713c.165T>A1.000
ethR4327716c.168C>A1.000
ethR4327720c.172A>C1.000
ethR4327765c.217C>T1.000
ethR4327770c.222C>G1.000
ethR4327782c.234G>T1.000
ethR4328067c.519A>C0.905
ethR4328076c.528C>T0.905
ethR4328088c.540G>A0.950
ethR4328097c.549G>A0.950
ethR4328106c.558A>C0.950
ethR4328114p.Gly189Ala0.950
ethR4328126p.Ser193Cys0.950
ethR4328130c.582G>A0.950
ethR4328136c.588A>G0.950
ethR4328139c.591C>G0.950
ethR4328141p.Arg198His0.950
ethR4328151c.603T>C0.950
ethR4328172c.624G>C1.000

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
This tool is for Research Use Only and is offered free for use. The London School of Hygiene and Tropical Medicine shall have no liability for any loss or damages of any kind, however sustained relating to the use of this tool.
© 2019 London School of Hygiene and Tropical Medicine;