Drug1 | Resistance | Supporting Mutations (frequency) |
Isoniazid | ||
Rifampicin | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Ethionamide | ||
Fluoroquinolones | ||
Amikacin | ||
Capreomycin | ||
Kanamycin |
Lineage2 | Family | Main Spoligotype | RDS |
lineage4 | Euro-American | LAM;T;S;X;H | None |
lineage4.5 | Euro-American | H;T | RD122 |
Gene | Chromosome Position | Mutation | Estimated fraction |
gyrB | 6100 | c.861G>A | 1.000 |
gyrB | 6115 | c.876A>G | 1.000 |
gyrB | 6121 | c.882C>T | 0.964 |
gyrB | 6127 | c.888G>C | 1.000 |
gyrB | 6133 | c.894G>C | 0.964 |
gyrB | 6136 | c.897G>A | 1.000 |
gyrB | 6151 | c.912C>T | 0.964 |
gyrB | 6172 | c.933C>T | 0.964 |
gyrB | 6184 | c.945C>T | 0.964 |
gyrB | 6193 | c.954G>A | 0.933 |
gyrB | 6196 | c.957C>T | 0.929 |
gyrB | 6202 | c.963C>T | 0.909 |
gyrB | 6203 | p.Ser322Ala | 0.909 |
gyrB | 6214 | c.975G>C | 1.000 |
gyrB | 6223 | c.984G>C | 1.000 |
gyrB | 6634 | c.1395T>C | 0.941 |
gyrB | 6637 | c.1398T>G | 0.941 |
gyrB | 6640 | c.1401A>C | 0.941 |
gyrB | 6643 | c.1404A>G | 0.941 |
gyrB | 6646 | c.1407C>T | 0.941 |
gyrB | 6655 | c.1416T>C | 1.000 |
gyrB | 6673 | c.1434A>C | 0.981 |
gyrB | 6676 | c.1437T>G | 0.982 |
gyrB | 6703 | c.1464G>C | 0.984 |
gyrB | 6706 | c.1467G>A | 0.984 |
gyrB | 6709 | c.1470A>G | 0.984 |
gyrB | 6712 | c.1473G>C | 0.985 |
gyrB | 6727 | c.1488G>T | 0.985 |
gyrB | 6728 | c.1489C>T | 0.985 |
gyrB | 6739 | c.1500C>T | 0.987 |
gyrB | 6745 | c.1506T>C | 0.987 |
gyrB | 6754 | c.1515C>T | 0.989 |
gyrB | 6763 | c.1524G>C | 0.989 |
gyrB | 6772 | c.1533C>G | 0.988 |
gyrB | 6775 | c.1536G>C | 0.986 |
gyrB | 6793 | c.1554T>C | 1.000 |
gyrB | 6798 | p.Gly520Ala | 1.000 |
gyrB | 6808 | c.1569C>G | 1.000 |
gyrB | 6824 | c.1585C>T | 1.000 |
gyrB | 6841 | c.1602T>C | 1.000 |
gyrB | 6862 | c.1623C>G | 1.000 |
gyrB | 6869 | c.1630T>C | 1.000 |
gyrB | 6872 | c.1633T>C | 1.000 |
gyrB | 6878 | c.1639T>C | 1.000 |
gyrB | 6889 | c.1650G>A | 1.000 |
gyrB | 6898 | c.1659G>T | 1.000 |
gyrB | 7006 | c.1767T>G | 1.000 |
gyrB | 7010 | p.Leu591Met | 1.000 |
gyrB | 7015 | c.1776G>A | 1.000 |
gyrB | 7018 | c.1779G>C | 1.000 |
gyrB | 7024 | c.1785G>C | 1.000 |
gyrB | 7033 | c.1794G>C | 1.000 |
gyrB | 7051 | p.Glu604Asp | 1.000 |
gyrB | 7060 | c.1821T>C | 1.000 |
gyrB | 7066 | c.1827G>T | 1.000 |
gyrB | 7078 | c.1839A>G | 1.000 |
gyrB | 7081 | c.1842T>C | 1.000 |
gyrB | 7084 | c.1845A>G | 1.000 |
gyrB | 7090 | c.1851C>T | 1.000 |
gyrB | 7093 | c.1854T>C | 1.000 |
gyrB | 7100 | c.1861T>C | 1.000 |
gyrA | 7499 | c.198G>C | 0.982 |
gyrA | 7511 | c.210C>T | 0.985 |
gyrA | 7523 | c.222C>G | 1.000 |
gyrA | 7526 | c.225G>A | 1.000 |
gyrA | 7547 | c.246C>T | 1.000 |
gyrA | 7553 | c.252C>T | 1.000 |
gyrA | 7559 | c.258G>C | 1.000 |
gyrA | 7565 | c.264C>T | 1.000 |
gyrA | 7574 | c.273G>C | 1.000 |
gyrA | 7585 | p.Ser95Thr | 1.000 |
gyrA | 7589 | c.288G>C | 1.000 |
gyrA | 7595 | c.294C>T | 1.000 |
gyrA | 7607 | c.306C>T | 1.000 |
gyrA | 7637 | c.336C>A | 1.000 |
gyrA | 8121 | c.820T>C | 1.000 |
gyrA | 8129 | c.828T>C | 1.000 |
gyrA | 8156 | c.855T>C | 1.000 |
gyrA | 8159 | c.858G>C | 1.000 |
gyrA | 8168 | c.867A>G | 1.000 |
gyrA | 8174 | c.873C>G | 1.000 |
gyrA | 8177 | c.876A>C | 1.000 |
gyrA | 8187 | p.Leu296Ile | 0.929 |
gyrA | 8192 | c.891C>G | 1.000 |
gyrA | 8198 | c.897T>C | 1.000 |
gyrA | 8207 | c.906T>C | 0.933 |
gyrA | 8267 | c.966G>C | 0.973 |
gyrA | 8283 | p.Ile328Leu | 0.977 |
gyrA | 8288 | c.987T>C | 0.979 |
gyrA | 8294 | c.993T>C | 1.000 |
gyrA | 8330 | c.1029C>G | 0.983 |
gyrA | 8339 | c.1038A>G | 1.000 |
gyrA | 8340 | p.Ala347Ser | 0.980 |
gyrA | 8354 | c.1053G>C | 0.978 |
gyrA | 8372 | c.1071G>T | 0.929 |
gyrA | 8382 | c.1081C>T | 0.944 |
gyrA | 8786 | c.1485T>G | 0.917 |
gyrA | 8792 | c.1491G>C | 0.929 |
gyrA | 8799 | p.Ala500Ser | 0.933 |
gyrA | 8810 | c.1509A>G | 0.941 |
gyrA | 8817 | p.Ser506Ala | 0.941 |
gyrA | 8828 | c.1527T>C | 0.947 |
gyrA | 8829 | c.1528T>C | 0.947 |
gyrA | 8837 | c.1536C>G | 0.969 |
gyrA | 8846 | c.1545C>T | 1.000 |
gyrA | 8852 | c.1551T>C | 1.000 |
gyrA | 8858 | c.1557T>C | 1.000 |
gyrA | 8870 | c.1569G>C | 1.000 |
gyrA | 8873 | c.1572A>G | 1.000 |
gyrA | 8897 | c.1596T>C | 1.000 |
gyrA | 8903 | c.1602T>C | 1.000 |
gyrA | 8915 | c.1614A>G | 1.000 |
gyrA | 8942 | c.1641G>C | 1.000 |
gyrA | 8945 | c.1644G>C | 1.000 |
gyrA | 8946 | c.1645T>C | 1.000 |
gyrA | 8967 | p.Ala556Lys | 1.000 |
gyrA | 8978 | c.1677C>T | 1.000 |
gyrA | 8987 | c.1686C>G | 1.000 |
gyrA | 8990 | c.1689C>G | 1.000 |
gyrA | 8993 | c.1692C>T | 1.000 |
gyrA | 8996 | c.1695T>C | 1.000 |
gyrA | 8998 | p.Leu566Trp | 1.000 |
gyrA | 9018 | p.Gln573Lys | 1.000 |
gyrA | 9023 | c.1722A>C | 0.917 |
rpoB | 760079 | c.273G>A | 0.962 |
rpoB | 760091 | c.285G>C | 0.971 |
rpoB | 760101 | c.295T>C | 0.971 |
rpoB | 760110 | c.304T>A | 0.971 |
rpoB | 760118 | c.312T>G | 0.974 |
rpoB | 760121 | c.315T>C | 0.974 |
rpoB | 760130 | p.Asp108Glu | 0.964 |
rpoB | 760139 | c.333A>G | 0.968 |
rpoB | 760181 | c.375T>C | 0.972 |
rpoB | 760184 | c.378A>G | 0.971 |
rpoB | 760196 | c.390C>G | 0.985 |
rpoB | 760235 | c.429T>C | 0.984 |
rpoB | 760244 | c.438G>C | 0.983 |
rpoB | 760256 | c.450C>T | 0.982 |
rpoB | 760274 | p.Glu156Asp | 1.000 |
rpoB | 760276 | p.Lys157Met | 1.000 |
rpoB | 760283 | c.477G>C | 1.000 |
rpoB | 760298 | c.492G>C | 1.000 |
rpoB | 760307 | c.501T>C | 1.000 |
rpoB | 760357 | p.Thr184Ser | 1.000 |
rpoB | 760361 | c.555T>C | 1.000 |
rpoB | 760370 | c.564C>G | 0.968 |
rpoB | 760376 | p.Asp190Glu | 0.969 |
rpoB | 760382 | c.576G>C | 0.970 |
rpoB | 760388 | c.582C>T | 0.972 |
rpoB | 760400 | c.594G>C | 0.977 |
rpoB | 760406 | c.600G>C | 0.913 |
rpoB | 760407 | p.Ser201Gly | 0.977 |
rpoB | 760415 | c.609C>T | 0.981 |
rpoB | 760418 | c.612G>C | 0.981 |
rpoB | 760430 | c.624T>C | 0.984 |
rpoB | 760460 | c.654G>C | 0.973 |
rpoB | 760475 | c.669A>G | 0.986 |
rpoB | 760481 | c.675G>C | 0.986 |
rpoB | 760484 | c.678A>G | 0.973 |
rpoB | 760502 | c.696C>G | 0.986 |
rpoB | 760522 | p.Ser239Asn | 0.986 |
rpoB | 760532 | c.726T>C | 0.986 |
rpoB | 760541 | c.735G>C | 0.985 |
rpoB | 760567 | p.Ser254Trp | 0.962 |
rpoB | 760571 | c.765G>C | 0.966 |
rpoB | 760588 | p.Thr261Ile | 0.977 |
rpoB | 760591 | p.Val262Ala | 0.977 |
rpoB | 760595 | c.789C>T | 1.000 |
rpoB | 760596 | p.Thr264Pro | 1.000 |
rpoB | 760608 | c.802C>T | 1.000 |
rpoB | 760611 | c.805T>C | 1.000 |
rpoB | 760634 | c.828T>C | 1.000 |
rpoB | 760646 | c.840C>G | 1.000 |
rpoB | 760655 | c.849A>G | 1.000 |
rpoB | 760661 | c.855A>G | 1.000 |
rpoB | 760668 | p.Thr288Ala | 1.000 |
rpoB | 760674 | c.868T>C | 1.000 |
rpoB | 760679 | c.873A>G | 1.000 |
rpoB | 760683 | c.877T>C | 1.000 |
rpoB | 760703 | c.897C>T | 1.000 |
rpoB | 760721 | c.915C>G | 1.000 |
rpoB | 760727 | c.921C>G | 1.000 |
rpoB | 760730 | c.924T>C | 1.000 |
rpoB | 760736 | c.930C>G | 1.000 |
rpoB | 760805 | c.999G>C | 1.000 |
rpoB | 760817 | c.1011A>G | 1.000 |
rpoB | 760820 | c.1014T>C | 1.000 |
rpoB | 760826 | c.1020C>G | 1.000 |
rpoB | 760830 | c.1024T>C | 1.000 |
rpoB | 760841 | c.1035T>C | 1.000 |
rpoB | 760858 | p.Val351Ala | 1.000 |
rpoB | 760862 | c.1056G>C | 1.000 |
rpoB | 760865 | c.1059C>T | 1.000 |
rpoB | 760886 | p.Glu360Asp | 1.000 |
rpoB | 760887 | p.Thr361Val | 1.000 |
rpoB | 760907 | c.1101C>T | 1.000 |
rpoB | 760910 | c.1104C>T | 1.000 |
rpoB | 760916 | c.1110C>T | 1.000 |
rpoB | 760928 | c.1122G>C | 1.000 |
rpoB | 760943 | c.1137C>T | 0.971 |
rpoB | 760946 | c.1140A>G | 1.000 |
rpoB | 760965 | p.Met387Leu | 0.962 |
rpoB | 760970 | c.1164G>C | 0.962 |
rpoB | 760973 | c.1167G>T | 0.960 |
rpoB | 760982 | c.1176G>C | 0.944 |
rpoB | 760985 | c.1179G>C | 0.938 |
rpoB | 760988 | c.1182C>G | 0.938 |
rpoB | 760991 | c.1185G>T | 0.938 |
rpoB | 760997 | c.1191G>C | 0.962 |
rpoB | 761006 | c.1200C>G | 1.000 |
rpoB | 761015 | c.1209G>C | 1.000 |
rpoB | 761027 | c.1221A>C | 1.000 |
rpoB | 761036 | c.1230G>C | 1.000 |
rpoB | 761037 | c.1231T>C | 1.000 |
rpoB | 761051 | c.1245G>T | 1.000 |
rpoB | 761054 | c.1248G>C | 0.977 |
rpoB | 761057 | c.1251G>C | 0.977 |
rpoB | 761060 | c.1254C>G | 0.977 |
rpoB | 761063 | c.1257C>G | 0.978 |
rpoB | 761084 | c.1278C>A | 1.000 |
rpoB | 761097 | c.1291A>T | 1.000 |
rpoB | 761102 | c.1296A>G | 1.000 |
rpoB | 761132 | c.1326G>C | 1.000 |
rpoB | 761133 | c.1327T>C | 1.000 |
rpoB | 761147 | c.1341C>T | 1.000 |
rpoB | 761150 | c.1344A>T | 1.000 |
rpoB | 761165 | c.1359G>C | 1.000 |
rpoB | 761171 | c.1365C>T | 1.000 |
rpoB | 761178 | p.Ser458Thr | 1.000 |
rpoB | 761186 | p.Glu460Asp | 1.000 |
rpoB | 761189 | c.1383T>C | 1.000 |
rpoB | 761195 | c.1389G>C | 1.000 |
rpoB | 761198 | c.1392G>C | 1.000 |
rpoB | 761219 | c.1413G>C | 1.000 |
rpoB | 761234 | c.1428G>C | 1.000 |
rpoB | 761246 | c.1440C>T | 0.986 |
rpoB | 761249 | c.1443A>G | 1.000 |
rpoB | 761255 | c.1449T>G | 1.000 |
rpoB | 761258 | c.1452G>A | 0.984 |
rpoB | 761261 | c.1455G>C | 0.954 |
rpoB | 761264 | c.1458C>G | 0.955 |
rpoB | 761273 | c.1467T>C | 1.000 |
rpoB | 761303 | c.1497G>C | 0.986 |
rpoB | 761318 | c.1512G>T | 1.000 |
rpoB | 761327 | c.1521A>G | 1.000 |
rpoB | 761333 | c.1527G>T | 0.980 |
rpoB | 761339 | c.1533C>G | 0.980 |
rpoB | 761345 | c.1539G>C | 1.000 |
rpoB | 761346 | p.Val514Ser | 1.000 |
rpoB | 761354 | c.1548C>A | 1.000 |
rpoB | 761357 | c.1551G>T | 1.000 |
rpoB | 761360 | c.1554T>C | 1.000 |
rpoB | 761362 | p.Ser519Thr | 1.000 |
rpoB | 761373 | p.Val523His | 1.000 |
rpoB | 761384 | c.1578C>G | 1.000 |
rpoB | 761393 | c.1587G>A | 0.917 |
rpoB | 761516 | c.1710G>C | 0.971 |
rpoB | 761528 | c.1722C>T | 0.976 |
rpoB | 761531 | c.1725C>T | 0.951 |
rpoB | 761537 | c.1731C>G | 1.000 |
rpoB | 761555 | c.1749G>C | 1.000 |
rpoB | 761558 | c.1752C>G | 1.000 |
rpoB | 761564 | c.1758G>C | 1.000 |
rpoB | 761570 | c.1764T>C | 0.982 |
rpoB | 761573 | c.1767C>G | 0.966 |
rpoB | 761579 | c.1773G>C | 1.000 |
rpoB | 761612 | c.1806G>T | 1.000 |
rpoB | 761615 | c.1809A>C | 1.000 |
rpoB | 761636 | c.1830G>T | 1.000 |
rpoB | 761645 | c.1839C>G | 1.000 |
rpoB | 761657 | c.1851C>T | 1.000 |
rpoB | 761666 | c.1860G>C | 0.973 |
rpoB | 761669 | c.1863C>T | 1.000 |
rpoB | 761675 | c.1869G>T | 1.000 |
rpoB | 761681 | c.1875G>A | 0.967 |
rpoB | 761682 | c.1876C>T | 0.967 |
rpoB | 761687 | c.1881C>T | 1.000 |
rpoB | 761690 | c.1884G>C | 1.000 |
rpoB | 761693 | c.1887G>C | 1.000 |
rpoB | 761705 | c.1899C>A | 1.000 |
rpoB | 761891 | c.2085G>C | 1.000 |
rpoB | 761909 | c.2103T>C | 1.000 |
rpoB | 761912 | c.2106T>C | 1.000 |
rpoB | 761915 | p.Asp703Glu | 1.000 |
rpoB | 761916 | p.Asp704Asn | 1.000 |
rpoB | 761924 | c.2118G>A | 1.000 |
rpoB | 761930 | c.2124G>C | 1.000 |
rpoB | 761933 | c.2127G>C | 1.000 |
rpoB | 761936 | c.2130C>T | 1.000 |
rpoB | 761948 | c.2142G>C | 1.000 |
rpoB | 761954 | c.2148C>A | 1.000 |
rpoB | 761955 | p.Ile717Val | 1.000 |
rpoB | 761969 | c.2163G>A | 1.000 |
rpoB | 761990 | c.2184G>C | 1.000 |
rpoB | 762008 | c.2202C>T | 1.000 |
rpoB | 762014 | c.2208C>G | 1.000 |
rpoB | 762038 | c.2232C>T | 1.000 |
rpoB | 762047 | c.2241G>A | 1.000 |
rpoB | 762053 | c.2247T>C | 1.000 |
rpoB | 762056 | c.2250G>A | 1.000 |
rpoB | 762065 | c.2259T>G | 0.980 |
rpoB | 762083 | c.2277T>C | 1.000 |
rpoB | 762086 | c.2280G>C | 1.000 |
rpoB | 762101 | c.2295C>G | 1.000 |
rpoB | 762114 | p.Ile770Val | 1.000 |
rpoB | 762122 | c.2316C>T | 1.000 |
rpoB | 762131 | c.2325C>G | 1.000 |
rpoB | 762134 | c.2328C>A | 1.000 |
rpoB | 762137 | c.2331C>T | 1.000 |
rpoB | 762140 | c.2334G>C | 1.000 |
rpoB | 762143 | c.2337T>C | 1.000 |
rpoB | 762149 | c.2343G>T | 0.979 |
rpoB | 762158 | c.2352G>C | 0.980 |
rpoB | 762167 | c.2361T>C | 0.981 |
rpoB | 762176 | c.2370T>C | 0.982 |
rpoB | 762185 | c.2379G>C | 0.984 |
rpoB | 762194 | c.2388G>C | 0.985 |
rpoB | 762233 | c.2427G>C | 1.000 |
rpoB | 762236 | c.2430G>C | 1.000 |
rpoB | 762245 | c.2439G>C | 1.000 |
rpoB | 762275 | c.2469C>T | 1.000 |
rpoB | 762284 | c.2478G>C | 1.000 |
rpoB | 762293 | c.2487T>C | 1.000 |
rpoB | 762296 | c.2490G>C | 1.000 |
rpoB | 762317 | c.2511A>G | 1.000 |
rpoB | 762323 | c.2517C>A | 1.000 |
rpoB | 762329 | c.2523G>C | 1.000 |
rpoB | 762404 | c.2598T>C | 1.000 |
rpoB | 762410 | c.2604T>G | 1.000 |
rpoB | 762416 | c.2610A>G | 1.000 |
rpoB | 762449 | c.2643C>A | 1.000 |
rpoB | 762452 | c.2646G>C | 1.000 |
rpoB | 762470 | c.2664G>C | 1.000 |
rpoB | 762488 | c.2682G>C | 1.000 |
rpoB | 762491 | c.2685T>C | 1.000 |
rpoB | 762509 | c.2703T>G | 1.000 |
rpoB | 762510 | p.Ala902Pro | 1.000 |
rpoB | 762515 | c.2709C>T | 1.000 |
rpoB | 762827 | c.3021G>C | 0.967 |
rpoB | 762830 | c.3024C>T | 0.970 |
rpoB | 762857 | c.3051C>G | 1.000 |
rpoB | 762860 | c.3054G>C | 1.000 |
rpoB | 762863 | c.3057T>C | 1.000 |
rpoB | 762866 | c.3060C>T | 1.000 |
rpoB | 762879 | p.Met1025Leu | 1.000 |
rpoB | 762894 | c.3088C>T | 1.000 |
rpoB | 762899 | c.3093G>C | 1.000 |
rpoB | 762917 | c.3111C>G | 1.000 |
rpoB | 762920 | c.3114C>T | 1.000 |
rpoB | 762923 | c.3117C>G | 1.000 |
rpoB | 762929 | c.3123G>C | 1.000 |
rpoB | 762959 | c.3153G>C | 1.000 |
rpoB | 762962 | c.3156C>T | 1.000 |
rpoB | 762995 | c.3189G>T | 0.985 |
rpoB | 763031 | c.3225T>G | 1.000 |
rpoB | 763034 | c.3228C>G | 1.000 |
rpoB | 763040 | c.3234C>G | 1.000 |
rpoB | 763070 | c.3264T>C | 1.000 |
rpoB | 763082 | c.3276C>T | 1.000 |
rpoB | 763088 | c.3282C>G | 1.000 |
rpoB | 763094 | c.3288G>C | 1.000 |
rpoB | 763115 | c.3309T>C | 1.000 |
rpoB | 763127 | c.3321G>C | 1.000 |
rpoB | 763136 | c.3330C>T | 1.000 |
rpoB | 763145 | c.3339G>A | 1.000 |
rpoB | 763157 | c.3351G>T | 1.000 |
rpoB | 763166 | c.3360A>G | 1.000 |
rpoB | 763172 | c.3366G>C | 1.000 |
rpoB | 763193 | c.3387C>G | 1.000 |
rpoC | 763450 | c.81G>A | 0.978 |
rpoC | 763456 | c.87A>G | 1.000 |
rpoC | 763468 | c.99G>C | 1.000 |
rpoC | 763486 | c.117T>C | 0.985 |
rpoC | 763492 | c.123G>C | 0.986 |
rpoC | 763528 | c.159G>A | 0.987 |
rpoC | 763531 | c.162G>T | 0.987 |
rpoC | 763546 | c.177A>G | 0.988 |
rpoC | 763570 | c.201G>C | 0.986 |
rpoC | 763594 | c.225C>T | 0.986 |
rpoC | 763633 | c.264T>C | 1.000 |
rpoC | 763657 | c.288G>A | 1.000 |
rpoC | 763660 | c.291T>G | 1.000 |
rpoC | 763666 | c.297G>C | 0.964 |
rpoC | 763669 | c.300C>G | 0.982 |
rpoC | 763675 | c.306C>G | 0.981 |
rpoC | 763699 | c.330G>T | 0.971 |
rpoC | 763702 | c.333C>G | 0.971 |
rpoC | 763708 | c.339G>C | 0.968 |
rpoC | 763711 | c.342G>C | 0.968 |
rpoC | 763714 | c.345G>C | 0.968 |
rpoC | 763717 | c.348T>C | 0.968 |
rpoC | 763723 | c.354G>C | 0.968 |
rpoC | 763732 | c.363C>A | 0.931 |
rpoC | 763741 | c.372C>T | 0.955 |
rpoC | 763744 | c.375G>C | 0.955 |
rpoC | 763747 | c.378G>A | 0.955 |
rpoC | 763765 | c.396T>C | 0.923 |
rpoC | 763891 | c.522G>C | 0.818 |
rpoC | 763894 | c.525A>G | 0.818 |
rpoC | 763900 | c.531G>C | 0.944 |
rpoC | 763933 | c.564C>T | 0.973 |
rpoC | 763940 | p.Ala191Ser | 0.947 |
rpoC | 763945 | c.576T>C | 0.947 |
rpoC | 763947 | p.Ala193Val | 0.947 |
rpoC | 763951 | c.582G>C | 0.923 |
rpoC | 763960 | c.591T>G | 0.947 |
rpoC | 763969 | c.600C>T | 0.923 |
rpoC | 763987 | c.618C>T | 0.917 |
rpoC | 763991 | p.Ile208Leu | 0.913 |
rpoC | 763996 | c.627T>C | 0.864 |
rpoC | 763999 | c.630C>T | 0.864 |
rpoC | 764002 | c.633C>G | 0.864 |
rpoC | 764003 | p.Ala212Ser | 0.864 |
rpoC | 764024 | c.655T>C | 0.939 |
rpoC | 764029 | p.Glu220Asp | 0.880 |
rpoC | 764032 | p.Asp221Glu | 0.880 |
rpoC | 764040 | p.Ser224Thr | 0.906 |
rpoC | 764044 | c.675T>C | 0.970 |
rpoC | 764054 | c.685C>T | 0.939 |
rpoC | 764059 | c.690G>T | 0.971 |
rpoC | 764083 | c.714A>G | 0.972 |
rpoC | 764084 | p.Asn239Val | 0.972 |
rpoC | 764095 | c.726C>T | 1.000 |
rpoC | 764098 | c.729A>G | 1.000 |
rpoC | 764143 | c.774G>C | 1.000 |
rpoC | 764147 | p.Ser260Ala | 1.000 |
rpoC | 764150 | p.Ile261Val | 1.000 |
rpoC | 764165 | p.Glu266Gln | 1.000 |
rpoC | 764176 | c.807C>T | 1.000 |
rpoC | 764177 | p.Ile270Leu | 0.909 |
rpoC | 764182 | c.813C>T | 1.000 |
rpoC | 764311 | c.942C>G | 1.000 |
rpoC | 764317 | c.948C>G | 1.000 |
rpoC | 764320 | c.951C>G | 1.000 |
rpoC | 764338 | c.969G>A | 1.000 |
rpoC | 764353 | c.984G>T | 1.000 |
rpoC | 764365 | c.996C>T | 1.000 |
rpoC | 764371 | c.1002G>C | 1.000 |
rpoC | 764377 | c.1008C>G | 1.000 |
rpoC | 764380 | c.1011G>C | 1.000 |
rpoC | 764387 | c.1018T>C | 1.000 |
rpoC | 764405 | c.1036A>C | 1.000 |
rpoC | 764428 | c.1059G>C | 1.000 |
rpoC | 764431 | c.1062G>C | 1.000 |
rpoC | 764434 | c.1065A>G | 1.000 |
rpoC | 764435 | c.1066A>C | 1.000 |
rpoC | 764458 | c.1089G>C | 1.000 |
rpoC | 764461 | c.1092A>G | 1.000 |
rpoC | 764497 | c.1128A>G | 1.000 |
rpoC | 764510 | c.1141C>T | 1.000 |
rpoC | 764524 | c.1155C>G | 1.000 |
rpoC | 764530 | c.1161C>G | 1.000 |
rpoC | 764534 | c.1165C>A | 1.000 |
rpoC | 764539 | c.1170C>T | 1.000 |
rpoC | 764542 | c.1173C>T | 1.000 |
rpoC | 764545 | c.1176C>A | 1.000 |
rpoC | 764560 | c.1191T>C | 1.000 |
rpoC | 764575 | c.1206T>G | 1.000 |
rpoC | 764611 | c.1242G>T | 1.000 |
rpoC | 764626 | c.1257C>T | 1.000 |
rpoC | 764632 | c.1263T>C | 1.000 |
rpoC | 764650 | c.1281G>T | 1.000 |
rpoC | 764668 | c.1299C>T | 0.984 |
rpoC | 764692 | c.1323C>T | 0.984 |
rpoC | 764713 | c.1344G>T | 1.000 |
rpoC | 764716 | c.1347G>C | 1.000 |
rpoC | 764746 | c.1377G>T | 1.000 |
rpoC | 764752 | c.1383G>C | 1.000 |
rpoC | 764758 | c.1389C>G | 1.000 |
rpoC | 764764 | c.1395T>C | 1.000 |
rpoC | 764791 | c.1422C>G | 0.980 |
rpoC | 764803 | c.1434C>T | 1.000 |
rpoC | 764809 | c.1440C>T | 1.000 |
rpoC | 764810 | p.Pro481Ala | 1.000 |
rpoC | 764815 | c.1446A>G | 1.000 |
rpoC | 764824 | c.1455T>C | 1.000 |
rpoC | 764827 | c.1458G>C | 1.000 |
rpoC | 764858 | c.1489T>C | 1.000 |
rpoC | 764869 | c.1500C>T | 1.000 |
rpoC | 764875 | c.1506C>A | 1.000 |
rpoC | 764887 | c.1518G>C | 1.000 |
rpoC | 764888 | c.1519T>C | 1.000 |
rpoC | 764896 | c.1527C>T | 1.000 |
rpoC | 764911 | c.1542A>G | 1.000 |
rpoC | 764912 | p.Met515Gln | 1.000 |
rpoC | 764932 | c.1563C>A | 1.000 |
rpoC | 764948 | c.1579T>C | 1.000 |
rpoC | 764968 | c.1599T>C | 1.000 |
rpoC | 765004 | c.1635G>C | 1.000 |
rpoC | 765007 | c.1638T>G | 1.000 |
rpoC | 765008 | c.1639T>C | 1.000 |
rpoC | 765011 | c.1642A>T | 1.000 |
rpoC | 765016 | c.1647C>G | 0.947 |
rpoC | 765019 | c.1650A>G | 0.947 |
rpoC | 765040 | c.1671T>C | 0.968 |
rpoC | 765041 | c.1672T>C | 0.968 |
rpoC | 765047 | c.1678T>C | 0.968 |
rpoC | 765055 | c.1686C>G | 0.967 |
rpoC | 765073 | c.1704G>C | 0.944 |
rpoC | 765076 | c.1707A>G | 0.944 |
rpoC | 765079 | c.1710T>G | 0.944 |
rpoC | 765082 | c.1713G>C | 0.944 |
rpoC | 765085 | c.1716T>C | 0.944 |
rpoC | 765089 | c.1720T>C | 0.944 |
rpoC | 765100 | c.1731G>C | 0.938 |
rpoC | 765103 | c.1734G>T | 0.938 |
rpoC | 765121 | c.1752G>T | 0.857 |
rpoC | 765129 | p.Tyr587Phe | 0.929 |
rpoC | 765143 | p.Val592Ile | 1.000 |
rpoC | 765352 | c.1983G>C | 1.000 |
rpoC | 765356 | p.Met663Val | 1.000 |
rpoC | 765370 | c.2001G>C | 1.000 |
rpoC | 765379 | c.2010G>C | 1.000 |
rpoC | 765382 | c.2013G>T | 1.000 |
rpoC | 765383 | p.Met672Leu | 1.000 |
rpoC | 765403 | c.2034G>C | 1.000 |
rpoC | 765405 | p.Leu679His | 1.000 |
rpoC | 765409 | c.2040T>G | 1.000 |
rpoC | 765421 | c.2052C>G | 1.000 |
rpoC | 765449 | p.Ala694Ser | 1.000 |
rpoC | 765454 | c.2085C>G | 1.000 |
rpoC | 765469 | c.2100G>C | 1.000 |
rpoC | 765478 | c.2109T>G | 0.984 |
rpoC | 765480 | p.Tyr704Phe | 1.000 |
rpoC | 765499 | c.2130C>G | 1.000 |
rpoC | 765517 | c.2148C>G | 1.000 |
rpoC | 765533 | p.Tyr722His | 1.000 |
rpoC | 765544 | c.2175C>G | 1.000 |
rpoC | 765547 | c.2178C>T | 1.000 |
rpoC | 765548 | c.2179A>T | 1.000 |
rpoC | 765553 | c.2184C>T | 1.000 |
rpoC | 765556 | c.2187G>C | 1.000 |
rpoC | 765562 | c.2193G>T | 1.000 |
rpoC | 765826 | c.2457T>C | 1.000 |
rpoC | 765835 | c.2466C>T | 0.978 |
rpoC | 765841 | c.2472G>T | 0.980 |
rpoC | 765861 | p.Phe831Tyr | 0.982 |
rpoC | 765875 | p.Val836Ile | 0.983 |
rpoC | 765907 | c.2538G>T | 0.984 |
rpoC | 765910 | c.2541G>C | 0.984 |
rpoC | 765928 | c.2559C>G | 0.982 |
rpoC | 765940 | c.2571A>T | 0.980 |
rpoC | 765947 | c.2578T>C | 0.980 |
rpoC | 765962 | c.2593T>C | 0.962 |
rpoC | 765967 | c.2598C>T | 0.958 |
rpoC | 765973 | c.2604C>G | 0.955 |
rpoC | 765979 | c.2610C>G | 0.952 |
rpoC | 765982 | c.2613C>T | 0.952 |
rpoC | 765994 | c.2625A>T | 1.000 |
rpoC | 766003 | c.2634G>C | 1.000 |
rpoC | 766009 | c.2640G>C | 1.000 |
rpoC | 766012 | c.2643C>G | 1.000 |
rpoC | 766321 | c.2952C>G | 1.000 |
rpoC | 766333 | c.2964G>C | 1.000 |
rpoC | 766345 | c.2976T>C | 1.000 |
rpoC | 766348 | c.2979A>G | 1.000 |
rpoC | 766351 | c.2982C>G | 1.000 |
rpoC | 766353 | p.Val995Ala | 1.000 |
rpoC | 766369 | c.3000C>G | 1.000 |
rpoC | 766375 | c.3006C>G | 1.000 |
rpoC | 766381 | c.3012C>T | 1.000 |
rpoC | 766384 | c.3015A>G | 1.000 |
rpoC | 766390 | c.3021C>T | 1.000 |
rpoC | 766393 | c.3024C>T | 1.000 |
rpoC | 766408 | c.3039C>T | 0.983 |
rpoC | 766435 | p.Glu1022Asp | 0.966 |
rpoC | 766501 | c.3132G>C | 0.917 |
rpoC | 766507 | c.3138C>T | 0.920 |
rpoC | 766513 | c.3144C>T | 0.926 |
rpoC | 766522 | c.3153C>A | 0.926 |
rpoC | 766528 | c.3159T>G | 0.926 |
rpoC | 766531 | c.3162G>C | 0.926 |
rpoC | 766534 | c.3165C>G | 0.926 |
rpoC | 766537 | c.3168G>A | 0.923 |
rpoC | 766540 | p.Asp1057Glu | 0.926 |
rpoC | 766549 | c.3180G>C | 0.957 |
rpoC | 766570 | c.3201T>C | 0.980 |
rpoC | 766573 | c.3204T>G | 0.980 |
rpoC | 766594 | c.3225G>T | 1.000 |
rpoC | 766607 | p.Ile1080Leu | 1.000 |
rpoC | 766618 | c.3249G>T | 1.000 |
rpoC | 766624 | c.3255G>C | 1.000 |
rpoC | 766630 | c.3261G>C | 1.000 |
rpoC | 766633 | c.3264G>C | 1.000 |
rpoC | 766645 | c.3276A>G | 1.000 |
rpoC | 766651 | c.3282T>C | 1.000 |
rpoC | 766792 | c.3423C>G | 0.903 |
rpoC | 766799 | p.Ala1144Ser | 0.903 |
rpoC | 766804 | c.3435A>G | 0.903 |
rpoC | 766837 | c.3468G>C | 0.903 |
rpoC | 766843 | c.3474T>G | 0.903 |
rpoC | 766846 | c.3477C>A | 0.903 |
rpoC | 766858 | c.3489C>T | 0.903 |
rpoC | 766861 | c.3492G>C | 0.903 |
rpoC | 766867 | c.3498C>G | 0.966 |
rpoC | 766876 | c.3507C>T | 0.966 |
rpoC | 766931 | p.Ala1188Ser | 0.977 |
rpoC | 766942 | c.3573C>T | 1.000 |
rpoC | 766945 | c.3576A>C | 1.000 |
rpoC | 766963 | c.3594T>C | 1.000 |
rpoC | 766996 | c.3627C>T | 0.986 |
rpoC | 767002 | c.3633G>C | 0.987 |
rpoC | 767008 | c.3639G>A | 0.987 |
rpoC | 767023 | c.3654C>T | 0.986 |
rpoC | 767044 | c.3675G>C | 0.985 |
rpoC | 767080 | c.3711G>C | 0.985 |
rpoC | 767098 | c.3729T>C | 0.981 |
rpoC | 767100 | p.Lys1244Arg | 0.980 |
rpoC | 767104 | c.3735C>G | 0.980 |
rpoC | 767107 | c.3738C>T | 0.980 |
rpoC | 767119 | c.3750A>G | 0.981 |
rpoC | 767125 | c.3756G>C | 0.980 |
rpoC | 767134 | c.3765C>T | 1.000 |
rpoC | 767138 | c.3769C>T | 1.000 |
rpoC | 767149 | c.3780C>T | 1.000 |
rpoC | 767158 | c.3789T>C | 1.000 |
rpoC | 767179 | c.3810C>T | 1.000 |
rpoC | 767180 | p.Ala1271Ser | 1.000 |
rpoC | 767191 | c.3822C>G | 1.000 |
rpoC | 767197 | c.3828G>A | 0.980 |
rpoC | 767203 | c.3834C>G | 0.976 |
rpoC | 767206 | c.3837C>G | 0.976 |
rpoC | 767209 | c.3840T>C | 0.977 |
rpoC | 767212 | c.3843G>C | 0.978 |
rpoC | 767221 | c.3852C>G | 0.984 |
rpoC | 767230 | c.3861G>C | 0.984 |
rpoC | 767233 | c.3864T>C | 0.984 |
rpoC | 767254 | c.3885G>C | 0.985 |
rpoC | 767264 | p.Ala1299Ser | 0.982 |
rpoC | 767267 | p.Ala1300Asn | 0.982 |
rpoC | 767281 | c.3912C>G | 0.981 |
rpoC | 767284 | c.3915C>G | 0.981 |
rpsL | 781559 | c.-1G>C | 0.971 |
rpsL | 781572 | p.Gln5Asn | 0.974 |
rpsL | 781586 | c.27C>T | 0.978 |
rpsL | 781595 | c.36T>C | 0.980 |
rpsL | 781608 | p.Ser17Ala | 0.980 |
rpsL | 781616 | c.57C>G | 0.983 |
rpsL | 781628 | c.69T>C | 0.985 |
rpsL | 781649 | c.90T>C | 0.986 |
rpsL | 781655 | c.96T>C | 0.985 |
rpsL | 781658 | c.99A>C | 0.985 |
rpsL | 781670 | c.111G>C | 0.983 |
rpsL | 781706 | c.147T>C | 1.000 |
rpsL | 781715 | c.156T>G | 1.000 |
rpsL | 781772 | c.213C>T | 1.000 |
rpsL | 781802 | c.243G>C | 0.962 |
rpsL | 781805 | c.246G>A | 0.931 |
rpsL | 781814 | c.255C>T | 0.971 |
rpsL | 781817 | c.258G>T | 0.972 |
rpsL | 781829 | c.270G>C | 0.975 |
rpsL | 781832 | c.273T>C | 0.976 |
rpsL | 781859 | c.300T>C | 0.930 |
rpsL | 781868 | c.309T>C | 0.923 |
rpsL | 781871 | c.312G>C | 0.923 |
rpsL | 781877 | c.318T>A | 0.921 |
rpsL | 781892 | c.333A>G | 0.919 |
rpsL | 781898 | c.339A>T | 0.914 |
rpsL | 781907 | c.348T>C | 0.912 |
rpsL | 781916 | c.357T>C | 0.879 |
rpsL | 781929 | p.Gly124Ser | 0.852 |
rpsL | 781933 | 374G>A | 0.840 |
rplC | 800796 | c.-13ATTGG>A | 1.000 |
rrs | 1471922 | r.77gt>g | 0.965 |
rrs | 1471925 | r.80t>c | 0.979 |
rrs | 1471931 | r.86ga>g | 0.980 |
rrs | 1471934 | r.89a>g | 0.980 |
rrs | 1471985 | r.140t>c | 0.982 |
rrs | 1471986 | r.141c>t | 0.982 |
rrs | 1472030 | r.185g>a | 1.000 |
rrs | 1472031 | r.186g>c | 1.000 |
rrs | 1472032 | r.187g>a | 1.000 |
rrs | 1472033 | r.188a>c | 1.000 |
rrs | 1472035 | r.190g>t | 1.000 |
rrs | 1472040 | r.195t>g | 1.000 |
rrs | 1472041 | r.196c>t | 1.000 |
rrs | 1472042 | r.197t>g | 1.000 |
rrs | 1472043 | r.198t>a | 1.000 |
rrs | 1472050 | r.205g>c | 1.000 |
rrs | 1472061 | r.216a>t | 1.000 |
rrs | 1472106 | r.261g>a | 1.000 |
rrs | 1472108 | r.263c>t | 1.000 |
rrs | 1472113 | r.268t>c | 0.980 |
rrs | 1472150 | r.305t>a | 1.000 |
rrs | 1472251 | r.406g>a | 1.000 |
rrs | 1472337 | r.492c>g | 1.000 |
rrs | 1472380 | r.535g>c | 1.000 |
rrs | 1472446 | r.601t>a | 0.986 |
rrs | 1472452 | r.607g>a | 0.986 |
rrs | 1472464 | r.619a>g | 0.986 |
rrs | 1472612 | r.767g>t | 0.985 |
rrs | 1472734 | r.889c>t | 0.985 |
rrs | 1472741 | r.896g>a | 0.983 |
rrs | 1472846 | r.1001c>t | 1.000 |
rrs | 1472847 | r.1002g>a | 1.000 |
rrs | 1472848 | r.1003t>c | 1.000 |
rrs | 1472860 | r.1015c>t | 1.000 |
rrs | 1472861 | r.1016g>a | 1.000 |
rrs | 1472956 | r.1111t>c | 1.000 |
rrs | 1472957 | r.1112c>t | 0.970 |
rrs | 1472969 | r.1124a>g | 1.000 |
rrs | 1472970 | r.1125c>g | 1.000 |
rrs | 1472977 | r.1132g>c | 1.000 |
rrs | 1472978 | r.1133t>c | 1.000 |
rrs | 1472989 | r.1144g>a | 1.000 |
rrs | 1472990 | r.1145a>g | 1.000 |
rrs | 1473082 | r.1237g>a | 0.977 |
rrs | 1473088 | r.1243a>g | 0.976 |
rrs | 1473099 | r.1254t>a | 0.970 |
rrs | 1473104 | r.1259c>t | 0.968 |
rrs | 1473105 | r.1260g>a | 0.968 |
rrs | 1473110 | r.1265t>g | 0.967 |
rrs | 1473111 | r.1266a>g | 0.967 |
rrs | 1473121 | r.1276t>c | 0.947 |
rrs | 1473123 | r.1278a>t | 0.973 |
rrs | 1473129 | r.1284c>t | 0.975 |
rrs | 1473145 | r.1300c>t | 0.978 |
rrs | 1473166 | r.1321g>a | 0.981 |
rrs | 1473288 | r.1443c>t | 1.000 |
rrs | 1473290 | r.1445c>t | 1.000 |
rrs | 1473291 | r.1446g>t | 1.000 |
rrl | 1473684 | r.27g>a | 1.000 |
rrl | 1473695 | r.38a>ac | 1.000 |
rrl | 1473697 | r.40c>a | 1.000 |
rrl | 1473699 | r.42ag>a | 1.000 |
rrl | 1473707 | r.50t>a | 1.000 |
rrl | 1473717 | r.60g>a | 1.000 |
rrl | 1473731 | r.74t>a | 1.000 |
rrl | 1473746 | r.89t>c | 1.000 |
rrl | 1473756 | r.99g>t | 1.000 |
rrl | 1473758 | r.101g>t | 1.000 |
rrl | 1473770 | r.113t>c | 1.000 |
rrl | 1473806 | r.149c>t | 1.000 |
rrl | 1473812 | r.155g>a | 0.980 |
rrl | 1473814 | r.157a>t | 1.000 |
rrl | 1473815 | r.158t>g | 1.000 |
rrl | 1473829 | r.172g>c | 1.000 |
rrl | 1473831 | r.174g>t | 1.000 |
rrl | 1473832 | r.175c>t | 1.000 |
rrl | 1473839 | r.182g>a | 1.000 |
rrl | 1473876 | r.219g>a | 1.000 |
rrl | 1473887 | r.230t>c | 1.000 |
rrl | 1473888 | r.231t>c | 1.000 |
rrl | 1473898 | r.241c>t | 1.000 |
rrl | 1473899 | r.242a>g | 1.000 |
rrl | 1473916 | r.259c>a | 1.000 |
rrl | 1473923 | r.266c>g | 1.000 |
rrl | 1473924 | r.267a>at | 1.000 |
rrl | 1473937 | r.280c>t | 1.000 |
rrl | 1473943 | r.286g>t | 1.000 |
rrl | 1473945 | r.288t>a | 0.955 |
rrl | 1473946 | r.289a>t | 0.955 |
rrl | 1473950 | r.293g>t | 0.955 |
rrl | 1474074 | r.417c>t | 0.944 |
rrl | 1474089 | r.432c>t | 0.944 |
rrl | 1474093 | r.436g>a | 0.944 |
rrl | 1474100 | r.443c>t | 1.000 |
rrl | 1474103 | r.446a>c | 1.000 |
rrl | 1474130 | r.473c>t | 1.000 |
rrl | 1474140 | r.483c>t | 1.000 |
rrl | 1474151 | r.494c>t | 1.000 |
rrl | 1474181 | r.524c>ct | 0.880 |
rrl | 1474184 | r.527c>a | 1.000 |
rrl | 1474185 | r.528ga>g | 1.000 |
rrl | 1474249 | r.592g>t | 1.000 |
rrl | 1474263 | r.606g>a | 1.000 |
rrl | 1474282 | r.625g>a | 1.000 |
rrl | 1474306 | r.649a>c | 1.000 |
rrl | 1474308 | r.651g>t | 1.000 |
rrl | 1474310 | r.653t>g | 1.000 |
rrl | 1474356 | r.699t>c | 1.000 |
rrl | 1474362 | r.705a>g | 1.000 |
rrl | 1474387 | r.730c>t | 1.000 |
rrl | 1474413 | r.756a>c | 1.000 |
rrl | 1474415 | r.758ccacacgcgcatacgcgcgtgtga>c | 1.000 |
rrl | 1474496 | r.839c>g | 0.981 |
rrl | 1474497 | r.840g>c | 0.981 |
rrl | 1474506 | r.849c>g | 0.981 |
rrl | 1474507 | r.850g>c | 0.981 |
rrl | 1474626 | r.969t>c | 1.000 |
rrl | 1474632 | r.975g>t | 1.000 |
rrl | 1474636 | r.979a>t | 1.000 |
rrl | 1474637 | r.980c>t | 1.000 |
rrl | 1474638 | r.981c>g | 1.000 |
rrl | 1474639 | r.982g>t | 1.000 |
rrl | 1474640 | r.983c>t | 1.000 |
rrl | 1474710 | r.1053tggtg>t | 1.000 |
rrl | 1474717 | r.1060a>g | 0.971 |
rrl | 1474722 | r.1065t>c | 0.971 |
rrl | 1474743 | r.1086t>g | 0.980 |
rrl | 1474760 | r.1103a>g | 0.980 |
rrl | 1474794 | r.1137c>t | 0.982 |
rrl | 1474803 | r.1146g>a | 0.983 |
rrl | 1474812 | r.1155g>a | 0.983 |
rrl | 1474830 | r.1173a>g | 0.984 |
rrl | 1474913 | r.1256t>c | 1.000 |
rrl | 1474932 | r.1275c>t | 1.000 |
rrl | 1475031 | r.1374g>c | 0.964 |
rrl | 1475061 | r.1404ca>c | 0.975 |
rrl | 1475076 | r.1419c>a | 0.976 |
rrl | 1475090 | r.1433a>t | 0.979 |
rrl | 1475114 | r.1457c>t | 0.981 |
rrl | 1475120 | r.1463g>t | 0.981 |
rrl | 1475129 | r.1472g>a | 0.982 |
rrl | 1475202 | r.1545g>c | 1.000 |
rrl | 1475209 | r.1552g>a | 1.000 |
rrl | 1475213 | r.1556c>t | 1.000 |
rrl | 1475220 | r.1563g>t | 1.000 |
rrl | 1475429 | r.1772g>a | 1.000 |
rrl | 1475443 | r.1786g>a | 1.000 |
rrl | 1475452 | r.1795c>a | 1.000 |
rrl | 1475475 | r.1818c>t | 1.000 |
rrl | 1475479 | r.1822c>t | 1.000 |
rrl | 1475480 | r.1823a>t | 1.000 |
rrl | 1475505 | r.1848g>a | 1.000 |
rrl | 1475526 | r.1869c>a | 1.000 |
rrl | 1475531 | r.1874c>t | 1.000 |
rrl | 1475573 | r.1916g>a | 1.000 |
rrl | 1475649 | r.1992a>g | 1.000 |
rrl | 1475659 | r.2002g>a | 1.000 |
rrl | 1475760 | r.2103ccg>c | 1.000 |
rrl | 1475764 | r.2107a>t | 1.000 |
rrl | 1475765 | r.2108a>t | 1.000 |
rrl | 1475975 | r.2318c>t | 0.978 |
rrl | 1475977 | r.2320a>g | 0.978 |
rrl | 1475988 | r.2331a>g | 0.971 |
rrl | 1475989 | r.2332t>c | 0.971 |
rrl | 1475993 | r.2336c>t | 0.971 |
rrl | 1475997 | r.2340a>t | 0.971 |
rrl | 1476085 | r.2428g>a | 1.000 |
rrl | 1476086 | r.2429g>a | 1.000 |
rrl | 1476088 | r.2431a>c | 1.000 |
rrl | 1476099 | r.2442a>g | 1.000 |
rrl | 1476103 | r.2446c>g | 0.944 |
rrl | 1476105 | r.2448g>a | 0.944 |
rrl | 1476106 | r.2449a>t | 0.944 |
rrl | 1476110 | r.2453g>c | 0.944 |
rrl | 1476114 | r.2457t>c | 0.944 |
rrl | 1476115 | r.2458t>c | 0.947 |
rrl | 1476131 | r.2474c>t | 0.973 |
rrl | 1476160 | r.2503t>c | 0.979 |
rrl | 1476214 | r.2557g>t | 1.000 |
rrl | 1476215 | r.2558c>t | 1.000 |
rrl | 1476221 | r.2564t>c | 1.000 |
rrl | 1476224 | r.2567a>g | 1.000 |
rrl | 1476251 | r.2594t>c | 0.978 |
rrl | 1476281 | r.2624t>c | 0.982 |
rrl | 1476297 | r.2640c>t | 0.981 |
rrl | 1476299 | r.2642c>t | 0.981 |
rrl | 1476584 | r.2927c>t | 1.000 |
rrl | 1476594 | r.2937c>t | 1.000 |
rrl | 1476597 | r.2940g>a | 1.000 |
rrl | 1476603 | r.2946g>a | 1.000 |
rrl | 1476608 | r.2951c>g | 1.000 |
rrl | 1476619 | r.2962c>t | 1.000 |
rrl | 1476628 | r.2971t>a | 1.000 |
rrl | 1476665 | r.3008t>a | 1.000 |
rrl | 1476666 | r.3009c>t | 1.000 |
rrl | 1476674 | r.3017t>c | 1.000 |
rpsA | 1833536 | c.-6A>C | 1.000 |
rpsA | 1833538 | c.-4CA>C | 1.000 |
rpsA | 1833541 | c.-1T>C | 1.000 |
rpsA | 1833547 | c.6G>A | 1.000 |
rpsA | 1833589 | c.48A>C | 1.000 |
rpsA | 1833595 | c.54T>G | 1.000 |
rpsA | 1833596 | p.Ser19Ala | 1.000 |
rpsA | 1833604 | c.63C>T | 1.000 |
rpsA | 1833616 | c.75A>T | 1.000 |
rpsA | 1833619 | c.78A>C | 1.000 |
rpsA | 1833625 | c.84A>G | 1.000 |
rpsA | 1833664 | c.123C>G | 1.000 |
rpsA | 1833676 | c.135A>G | 1.000 |
rpsA | 1833679 | c.138G>T | 1.000 |
rpsA | 1833685 | c.144G>C | 1.000 |
rpsA | 1833691 | c.150G>A | 1.000 |
rpsA | 1833694 | c.153G>T | 1.000 |
rpsA | 1833697 | c.156C>T | 1.000 |
rpsA | 1833700 | c.159C>T | 1.000 |
rpsA | 1833709 | c.168C>T | 1.000 |
rpsA | 1833724 | c.183C>T | 1.000 |
rpsA | 1833727 | c.186G>C | 1.000 |
rpsA | 1833733 | c.192C>G | 1.000 |
rpsA | 1833734 | p.Ala65Ser | 1.000 |
rpsA | 1833742 | c.201A>G | 1.000 |
rpsA | 1833745 | c.204G>C | 1.000 |
rpsA | 1833748 | c.207C>G | 1.000 |
rpsA | 1833760 | c.219C>T | 1.000 |
rpsA | 1833787 | c.246C>G | 0.983 |
rpsA | 1833790 | c.249T>C | 0.983 |
rpsA | 1833802 | c.261A>G | 0.984 |
rpsA | 1833811 | c.270G>T | 0.985 |
rpsA | 1833823 | c.282G>A | 0.984 |
rpsA | 1833832 | c.291G>A | 0.984 |
rpsA | 1833838 | c.297G>C | 0.984 |
rpsA | 1833841 | c.300C>G | 0.984 |
rpsA | 1833847 | c.306C>G | 0.984 |
rpsA | 1833856 | c.315A>G | 0.984 |
rpsA | 1833862 | c.321G>T | 0.985 |
rpsA | 1833874 | c.333T>G | 0.985 |
rpsA | 1833886 | c.345C>G | 0.968 |
rpsA | 1833894 | p.Ala118Glu | 0.984 |
rpsA | 1833928 | c.387G>C | 1.000 |
rpsA | 1833949 | c.408T>C | 1.000 |
rpsA | 1833961 | c.420C>G | 0.987 |
rpsA | 1833970 | c.429G>T | 0.987 |
rpsA | 1833979 | c.438T>C | 0.987 |
rpsA | 1833991 | c.450C>G | 0.987 |
rpsA | 1834000 | c.459G>C | 0.976 |
rpsA | 1834009 | c.468C>T | 0.986 |
rpsA | 1834012 | c.471G>C | 0.986 |
rpsA | 1834015 | c.474G>C | 0.986 |
rpsA | 1834021 | c.480C>T | 0.988 |
rpsA | 1834030 | c.489C>G | 0.988 |
rpsA | 1834033 | c.492C>T | 0.987 |
rpsA | 1834073 | p.Lys178Arg | 1.000 |
rpsA | 1834096 | c.555G>C | 0.981 |
rpsA | 1834099 | c.558C>G | 1.000 |
rpsA | 1834108 | c.567C>G | 1.000 |
rpsA | 1834114 | c.573G>C | 1.000 |
rpsA | 1834177 | c.636A>C | 1.000 |
rpsA | 1834228 | c.687C>A | 1.000 |
rpsA | 1834231 | c.690T>G | 1.000 |
rpsA | 1834234 | c.693G>T | 1.000 |
rpsA | 1834240 | c.699T>C | 1.000 |
rpsA | 1834246 | c.705G>T | 1.000 |
rpsA | 1834249 | c.708T>C | 1.000 |
rpsA | 1834252 | c.711C>G | 1.000 |
rpsA | 1834261 | c.720A>G | 1.000 |
rpsA | 1834264 | c.723G>C | 1.000 |
rpsA | 1834279 | c.738C>T | 1.000 |
rpsA | 1834294 | c.753G>T | 1.000 |
rpsA | 1834297 | c.756C>T | 1.000 |
rpsA | 1834303 | c.762T>G | 1.000 |
rpsA | 1834306 | c.765T>C | 1.000 |
rpsA | 1834327 | c.786G>T | 1.000 |
rpsA | 1834357 | c.816T>C | 1.000 |
rpsA | 1834366 | c.825A>G | 1.000 |
rpsA | 1834375 | c.834G>C | 1.000 |
rpsA | 1834396 | c.855G>C | 1.000 |
rpsA | 1834411 | c.870T>G | 1.000 |
rpsA | 1834414 | c.873C>T | 1.000 |
rpsA | 1834417 | c.876G>C | 1.000 |
rpsA | 1834420 | c.879C>T | 1.000 |
rpsA | 1834423 | c.882G>C | 1.000 |
rpsA | 1834429 | c.888C>T | 1.000 |
rpsA | 1834438 | c.897C>T | 1.000 |
rpsA | 1834451 | c.910T>C | 1.000 |
rpsA | 1834456 | c.915T>G | 1.000 |
rpsA | 1834468 | c.927A>G | 1.000 |
rpsA | 1834477 | c.936C>T | 1.000 |
rpsA | 1834489 | c.948T>C | 1.000 |
rpsA | 1834519 | c.978G>C | 1.000 |
rpsA | 1834520 | p.Ala327Ser | 1.000 |
rpsA | 1834528 | c.987T>C | 0.982 |
rpsA | 1834534 | c.993C>T | 1.000 |
rpsA | 1834543 | c.1002C>G | 1.000 |
rpsA | 1834546 | c.1005T>C | 1.000 |
rpsA | 1834552 | c.1011G>T | 1.000 |
rpsA | 1834555 | c.1014T>G | 1.000 |
rpsA | 1834557 | p.Ala339Gly | 1.000 |
rpsA | 1834606 | c.1065C>T | 1.000 |
rpsA | 1834609 | c.1068T>C | 1.000 |
rpsA | 1834619 | c.1078T>C | 1.000 |
rpsA | 1834622 | c.1081T>A | 0.978 |
rpsA | 1834633 | c.1092A>G | 1.000 |
rpsA | 1834639 | c.1098T>C | 1.000 |
rpsA | 1834645 | c.1104C>T | 1.000 |
rpsA | 1834666 | c.1125G>C | 1.000 |
rpsA | 1834667 | p.Ala376Ser | 1.000 |
rpsA | 1834690 | c.1149T>C | 1.000 |
rpsA | 1834700 | p.Gln387Ala | 1.000 |
rpsA | 1834705 | c.1164C>G | 1.000 |
rpsA | 1834720 | c.1179C>G | 1.000 |
rpsA | 1834732 | c.1191T>C | 0.984 |
rpsA | 1834738 | c.1197A>G | 1.000 |
rpsA | 1834753 | c.1212T>C | 1.000 |
rpsA | 1834759 | c.1218A>C | 1.000 |
rpsA | 1834765 | p.Glu408Asp | 1.000 |
rpsA | 1834774 | c.1233C>T | 0.978 |
rpsA | 1834776 | p.Ala412Glu | 0.978 |
rpsA | 1834780 | c.1239A>G | 0.978 |
rpsA | 1834789 | c.1248T>C | 0.978 |
rpsA | 1834813 | c.1272G>T | 0.974 |
rpsA | 1834830 | p.Ala430Val | 0.966 |
kasA | 2518738 | c.624G>C | 1.000 |
kasA | 2518756 | c.642G>C | 1.000 |
kasA | 2518768 | c.654C>G | 1.000 |
kasA | 2518771 | c.657C>A | 1.000 |
kasA | 2518774 | c.660C>T | 1.000 |
kasA | 2518783 | c.669T>G | 1.000 |
kasA | 2518787 | p.Arg225Lys | 0.968 |
kasA | 2518792 | c.678C>T | 0.968 |
kasA | 2518795 | c.681C>T | 0.968 |
kasA | 2518798 | c.684G>C | 0.969 |
kasA | 2518822 | c.708C>A | 0.982 |
kasA | 2518825 | c.711T>C | 0.982 |
kasA | 2518846 | c.732G>T | 0.962 |
kasA | 2518849 | c.735G>C | 0.961 |
kasA | 2518853 | p.Leu247Val | 0.960 |
kasA | 2518864 | c.750G>C | 0.952 |
panD | 4044138 | c.144A>G | 0.923 |
panD | 4044150 | c.132T>G | 1.000 |
panD | 4044156 | c.126T>C | 1.000 |
panD | 4044167 | c.115G>A | 1.000 |
panD | 4044171 | c.111G>A | 1.000 |
panD | 4044174 | c.108G>A | 1.000 |
panD | 4044180 | p.Asp34Glu | 1.000 |
panD | 4044188 | c.94C>G | 1.000 |
panD | 4044189 | c.93G>A | 1.000 |
panD | 4044194 | p.Ala30Pro | 1.000 |
panD | 4044195 | c.87A>G | 1.000 |
panD | 4044233 | p.Cys17His | 1.000 |
panD | 4044234 | c.48G>C | 1.000 |
panD | 4044249 | c.33G>A | 1.000 |
panD | 4044266 | p.Leu6Met | 1.000 |
panD | 4044273 | c.9C>G | 1.000 |
panD | 4044276 | p.Leu2Phe | 1.000 |
embC | 4240729 | c.867C>G | 1.000 |
embC | 4240735 | c.873C>G | 1.000 |
embC | 4240741 | c.879C>T | 1.000 |
embC | 4240756 | c.894G>C | 0.988 |
embC | 4240771 | c.909G>C | 0.982 |
embC | 4240772 | p.Ser304Ala | 0.981 |
embC | 4240778 | p.His306Gly | 0.981 |
embC | 4240781 | p.Ala307Ser | 0.981 |
embC | 4240789 | c.927T>C | 0.986 |
embC | 4240819 | c.957A>C | 0.984 |
embC | 4240826 | p.Ala322Ser | 0.983 |
embC | 4240831 | c.969T>G | 0.983 |
embC | 4240856 | p.Ala332Thr | 0.973 |
embC | 4240859 | p.Leu333Ile | 0.973 |
embC | 4240876 | c.1014C>T | 0.970 |
embC | 4240879 | c.1017G>T | 0.967 |
embC | 4240885 | c.1023T>C | 0.964 |
embC | 4240886 | p.Ile342Val | 0.964 |
embC | 4240897 | c.1035C>G | 0.958 |
embC | 4240900 | c.1038A>G | 0.955 |
embC | 4240909 | c.1047G>C | 1.000 |
embB | 4248220 | c.1707A>G | 0.939 |
embB | 4248226 | c.1713G>C | 0.969 |
embB | 4248232 | c.1719G>T | 0.969 |
embB | 4248233 | p.Leu574Val | 0.969 |
embB | 4248236 | p.Met575Leu | 0.972 |
embB | 4248245 | p.Ile578Val | 0.980 |
embB | 4248250 | c.1737C>T | 0.981 |
embB | 4248259 | p.Met582Ile | 0.981 |
embB | 4248275 | p.Thr588Ala | 0.981 |
embB | 4248292 | c.1779G>A | 0.981 |
TBProfiler Version: 2.1.1
Analysis | Program |
Mapping | bwa |
Variant Calling | BCFtools |
Drug1 | Sensitivity (%) | Specificity (%) |
Isoniazid | 92.8 (89.9-95.7) | 100 (100-100) |
Rifampicin | 96.2 (93.9-98.5) | 98.1 (96.8-99.4) |
Ethambutal | 88.7 (83.6-93.8) | 81.7 (77.6-85.8) |
Pyrazinamide | 70.9 (62.4-79.4) | 93.9 (90.6-97.2) |
Streptomycin | 87.1 (82.7-91.5) | 89.7 (86.0-93.4) |
Ethionamide | 73.6 (66.7-80.5) | 93.3 (89.6-97.0) |
Moxifloxacin | 60.0 (29.6-90.4) | 68.7 (52.6-84.8) |
Ofloxacin | 85.5 (79.1-91.9) | 94.9 (91.8-98.0) |
Amikacin | 82.9 (74.4-91.4) | 98.3 (96.0-100) |
Capreomycin | 60.7 (50.6-70.8) | 90.7 (87.2-94.2) |
Kanamycin | 87.3 (81.3-93.3) | 93.4 (89.9-96.9) |
Para-aminosalisylic acid | Not determined | Not determined |
Linezolid | Not determined | Not determined |
Clofazimine | Not determined | Not determined |
Bedaquiline | Not determined | Not determined |
Multi drug resistance | 91.2 (87.8-94.6) | 98.4 (97.2-99.6) |
Extremely drug resistance | 75.9 (64.5-87.3) | 98.4 (97.3-99.5) |
Lineage2 | Location | Strain | RD type |
lineage1 | Indo-Oceanic | EAI | RD239 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 |
lineage1.1.1 | Indo-Oceanic | EAI4;EAI5 | RD239 |
lineage1.1.1.1 | Indo-Oceanic | EAI4;ZERO | RD239 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 |
lineage1.1.3 | Indo-Oceanic | EAI6 | RD239 |
lineage1.2 | Indo-Oceanic | EAI1;EAI2 | RD239 |
lineage1.2.1 | Indo-Oceanic | EAI2 | RD239 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 |
lineage2 | East-Asian | Beijing | RD105 |
lineage2.1 | East-Asian (non-Beijing) | None | None |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 |
lineage2.2.2 | East-Asian (Beijing) | Beijing-RD105/RD207 | RD105;RD207 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 |
lineage2.2.1.2 | East-Asian (Beijing) | Beijing-RD142 | RD105;RD207;RD181;RD142 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 |
lineage3 | East-African-Indian | CAS | RD750 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 |
lineage3.1.2 | East-African-Indian | CAS;CAS2 | RD750 |
lineage3.1.2.1 | East-African-Indian | CAS2 | RD750 |
lineage3.1.2.2 | East-African-Indian | CAS | RD750 |
lineage4 | Euro-American | LAM;T;S;X;H | None |
lineage4.1 | Euro-American | T;X;H | None |
lineage4.1.2 | Euro-American (X-type) | T;H | None |
lineage4.1.2.1 | Euro-American (X-type) | T1;H1 | RD182 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None |
lineage4.1.1.1 | Euro-American (X-type) | X2 | RD183 |
lineage4.1.1.3 | Euro-American (Haarlem) | X1;X3 | RD193 |
lineage4.2 | Euro-American | H;T;LAM | None |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None |
lineage4.2.2.1 | Euro-American | LAM7-TUR | None |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 |
lineage4.4 | Euro-American | S;T | None |
lineage4.4.2 | Euro-American | T1;T2 | None |
lineage4.4.1 | Euro-American (S-type) | S;T | None |
lineage4.4.1.2 | Euro-American | T1 | None |
lineage4.4.1.1 | Euro-American | S;Orphans | None |
lineage4.5 | Euro-American | H;T | RD122 |
lineage4.6 | Euro-American | T;LAM | None |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 |
lineage4.6.1.2 | Euro-American | T2 | RD724 |
lineage4.6.2 | Euro-American | T;LAM | RD726 |
lineage4.6.2.1 | Euro-American | T3 | RD726 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None |
lineage5 | West-Africa 1 | AFRI_2;AFRI_3 | RD711 |
lineage6 | West-Africa 2 | AFRI_1 | RD702 |
lineage7 | Lineage 7 | None | None |
lineageBOV | M. bovis | BOV_1;BOV_2 | None |