This tool processes raw sequence data to infer strain type and identify known drug resistance markers.

A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.

This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.

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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).

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Drug1	Resistance	Supporting Mutations (frequency)
Isoniazid
Rifampicin
Ethambutol
Pyrazinamide
Streptomycin
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2	Family	Main Spoligotype	RDS
lineage4	Euro-American	LAM;T;S;X;H	None
lineage4.5	Euro-American	H;T	RD122

Gene	Chromosome Position	Mutation	Estimated fraction
gyrB	6100	c.861G>A	1.000
gyrB	6115	c.876A>G	1.000
gyrB	6121	c.882C>T	0.964
gyrB	6127	c.888G>C	1.000
gyrB	6133	c.894G>C	0.964
gyrB	6136	c.897G>A	1.000
gyrB	6151	c.912C>T	0.964
gyrB	6172	c.933C>T	0.964
gyrB	6184	c.945C>T	0.964
gyrB	6193	c.954G>A	0.933
gyrB	6196	c.957C>T	0.929
gyrB	6202	c.963C>T	0.909
gyrB	6203	p.Ser322Ala	0.909
gyrB	6214	c.975G>C	1.000
gyrB	6223	c.984G>C	1.000
gyrB	6634	c.1395T>C	0.941
gyrB	6637	c.1398T>G	0.941
gyrB	6640	c.1401A>C	0.941
gyrB	6643	c.1404A>G	0.941
gyrB	6646	c.1407C>T	0.941
gyrB	6655	c.1416T>C	1.000
gyrB	6673	c.1434A>C	0.981
gyrB	6676	c.1437T>G	0.982
gyrB	6703	c.1464G>C	0.984
gyrB	6706	c.1467G>A	0.984
gyrB	6709	c.1470A>G	0.984
gyrB	6712	c.1473G>C	0.985
gyrB	6727	c.1488G>T	0.985
gyrB	6728	c.1489C>T	0.985
gyrB	6739	c.1500C>T	0.987
gyrB	6745	c.1506T>C	0.987
gyrB	6754	c.1515C>T	0.989
gyrB	6763	c.1524G>C	0.989
gyrB	6772	c.1533C>G	0.988
gyrB	6775	c.1536G>C	0.986
gyrB	6793	c.1554T>C	1.000
gyrB	6798	p.Gly520Ala	1.000
gyrB	6808	c.1569C>G	1.000
gyrB	6824	c.1585C>T	1.000
gyrB	6841	c.1602T>C	1.000
gyrB	6862	c.1623C>G	1.000
gyrB	6869	c.1630T>C	1.000
gyrB	6872	c.1633T>C	1.000
gyrB	6878	c.1639T>C	1.000
gyrB	6889	c.1650G>A	1.000
gyrB	6898	c.1659G>T	1.000
gyrB	7006	c.1767T>G	1.000
gyrB	7010	p.Leu591Met	1.000
gyrB	7015	c.1776G>A	1.000
gyrB	7018	c.1779G>C	1.000
gyrB	7024	c.1785G>C	1.000
gyrB	7033	c.1794G>C	1.000
gyrB	7051	p.Glu604Asp	1.000
gyrB	7060	c.1821T>C	1.000
gyrB	7066	c.1827G>T	1.000
gyrB	7078	c.1839A>G	1.000
gyrB	7081	c.1842T>C	1.000
gyrB	7084	c.1845A>G	1.000
gyrB	7090	c.1851C>T	1.000
gyrB	7093	c.1854T>C	1.000
gyrB	7100	c.1861T>C	1.000
gyrA	7499	c.198G>C	0.982
gyrA	7511	c.210C>T	0.985
gyrA	7523	c.222C>G	1.000
gyrA	7526	c.225G>A	1.000
gyrA	7547	c.246C>T	1.000
gyrA	7553	c.252C>T	1.000
gyrA	7559	c.258G>C	1.000
gyrA	7565	c.264C>T	1.000
gyrA	7574	c.273G>C	1.000
gyrA	7585	p.Ser95Thr	1.000
gyrA	7589	c.288G>C	1.000
gyrA	7595	c.294C>T	1.000
gyrA	7607	c.306C>T	1.000
gyrA	7637	c.336C>A	1.000
gyrA	8121	c.820T>C	1.000
gyrA	8129	c.828T>C	1.000
gyrA	8156	c.855T>C	1.000
gyrA	8159	c.858G>C	1.000
gyrA	8168	c.867A>G	1.000
gyrA	8174	c.873C>G	1.000
gyrA	8177	c.876A>C	1.000
gyrA	8187	p.Leu296Ile	0.929
gyrA	8192	c.891C>G	1.000
gyrA	8198	c.897T>C	1.000
gyrA	8207	c.906T>C	0.933
gyrA	8267	c.966G>C	0.973
gyrA	8283	p.Ile328Leu	0.977
gyrA	8288	c.987T>C	0.979
gyrA	8294	c.993T>C	1.000
gyrA	8330	c.1029C>G	0.983
gyrA	8339	c.1038A>G	1.000
gyrA	8340	p.Ala347Ser	0.980
gyrA	8354	c.1053G>C	0.978
gyrA	8372	c.1071G>T	0.929
gyrA	8382	c.1081C>T	0.944
gyrA	8786	c.1485T>G	0.917
gyrA	8792	c.1491G>C	0.929
gyrA	8799	p.Ala500Ser	0.933
gyrA	8810	c.1509A>G	0.941
gyrA	8817	p.Ser506Ala	0.941
gyrA	8828	c.1527T>C	0.947
gyrA	8829	c.1528T>C	0.947
gyrA	8837	c.1536C>G	0.969
gyrA	8846	c.1545C>T	1.000
gyrA	8852	c.1551T>C	1.000
gyrA	8858	c.1557T>C	1.000
gyrA	8870	c.1569G>C	1.000
gyrA	8873	c.1572A>G	1.000
gyrA	8897	c.1596T>C	1.000
gyrA	8903	c.1602T>C	1.000
gyrA	8915	c.1614A>G	1.000
gyrA	8942	c.1641G>C	1.000
gyrA	8945	c.1644G>C	1.000
gyrA	8946	c.1645T>C	1.000
gyrA	8967	p.Ala556Lys	1.000
gyrA	8978	c.1677C>T	1.000
gyrA	8987	c.1686C>G	1.000
gyrA	8990	c.1689C>G	1.000
gyrA	8993	c.1692C>T	1.000
gyrA	8996	c.1695T>C	1.000
gyrA	8998	p.Leu566Trp	1.000
gyrA	9018	p.Gln573Lys	1.000
gyrA	9023	c.1722A>C	0.917
rpoB	760079	c.273G>A	0.962
rpoB	760091	c.285G>C	0.971
rpoB	760101	c.295T>C	0.971
rpoB	760110	c.304T>A	0.971
rpoB	760118	c.312T>G	0.974
rpoB	760121	c.315T>C	0.974
rpoB	760130	p.Asp108Glu	0.964
rpoB	760139	c.333A>G	0.968
rpoB	760181	c.375T>C	0.972
rpoB	760184	c.378A>G	0.971
rpoB	760196	c.390C>G	0.985
rpoB	760235	c.429T>C	0.984
rpoB	760244	c.438G>C	0.983
rpoB	760256	c.450C>T	0.982
rpoB	760274	p.Glu156Asp	1.000
rpoB	760276	p.Lys157Met	1.000
rpoB	760283	c.477G>C	1.000
rpoB	760298	c.492G>C	1.000
rpoB	760307	c.501T>C	1.000
rpoB	760357	p.Thr184Ser	1.000
rpoB	760361	c.555T>C	1.000
rpoB	760370	c.564C>G	0.968
rpoB	760376	p.Asp190Glu	0.969
rpoB	760382	c.576G>C	0.970
rpoB	760388	c.582C>T	0.972
rpoB	760400	c.594G>C	0.977
rpoB	760406	c.600G>C	0.913
rpoB	760407	p.Ser201Gly	0.977
rpoB	760415	c.609C>T	0.981
rpoB	760418	c.612G>C	0.981
rpoB	760430	c.624T>C	0.984
rpoB	760460	c.654G>C	0.973
rpoB	760475	c.669A>G	0.986
rpoB	760481	c.675G>C	0.986
rpoB	760484	c.678A>G	0.973
rpoB	760502	c.696C>G	0.986
rpoB	760522	p.Ser239Asn	0.986
rpoB	760532	c.726T>C	0.986
rpoB	760541	c.735G>C	0.985
rpoB	760567	p.Ser254Trp	0.962
rpoB	760571	c.765G>C	0.966
rpoB	760588	p.Thr261Ile	0.977
rpoB	760591	p.Val262Ala	0.977
rpoB	760595	c.789C>T	1.000
rpoB	760596	p.Thr264Pro	1.000
rpoB	760608	c.802C>T	1.000
rpoB	760611	c.805T>C	1.000
rpoB	760634	c.828T>C	1.000
rpoB	760646	c.840C>G	1.000
rpoB	760655	c.849A>G	1.000
rpoB	760661	c.855A>G	1.000
rpoB	760668	p.Thr288Ala	1.000
rpoB	760674	c.868T>C	1.000
rpoB	760679	c.873A>G	1.000
rpoB	760683	c.877T>C	1.000
rpoB	760703	c.897C>T	1.000
rpoB	760721	c.915C>G	1.000
rpoB	760727	c.921C>G	1.000
rpoB	760730	c.924T>C	1.000
rpoB	760736	c.930C>G	1.000
rpoB	760805	c.999G>C	1.000
rpoB	760817	c.1011A>G	1.000
rpoB	760820	c.1014T>C	1.000
rpoB	760826	c.1020C>G	1.000
rpoB	760830	c.1024T>C	1.000
rpoB	760841	c.1035T>C	1.000
rpoB	760858	p.Val351Ala	1.000
rpoB	760862	c.1056G>C	1.000
rpoB	760865	c.1059C>T	1.000
rpoB	760886	p.Glu360Asp	1.000
rpoB	760887	p.Thr361Val	1.000
rpoB	760907	c.1101C>T	1.000
rpoB	760910	c.1104C>T	1.000
rpoB	760916	c.1110C>T	1.000
rpoB	760928	c.1122G>C	1.000
rpoB	760943	c.1137C>T	0.971
rpoB	760946	c.1140A>G	1.000
rpoB	760965	p.Met387Leu	0.962
rpoB	760970	c.1164G>C	0.962
rpoB	760973	c.1167G>T	0.960
rpoB	760982	c.1176G>C	0.944
rpoB	760985	c.1179G>C	0.938
rpoB	760988	c.1182C>G	0.938
rpoB	760991	c.1185G>T	0.938
rpoB	760997	c.1191G>C	0.962
rpoB	761006	c.1200C>G	1.000
rpoB	761015	c.1209G>C	1.000
rpoB	761027	c.1221A>C	1.000
rpoB	761036	c.1230G>C	1.000
rpoB	761037	c.1231T>C	1.000
rpoB	761051	c.1245G>T	1.000
rpoB	761054	c.1248G>C	0.977
rpoB	761057	c.1251G>C	0.977
rpoB	761060	c.1254C>G	0.977
rpoB	761063	c.1257C>G	0.978
rpoB	761084	c.1278C>A	1.000
rpoB	761097	c.1291A>T	1.000
rpoB	761102	c.1296A>G	1.000
rpoB	761132	c.1326G>C	1.000
rpoB	761133	c.1327T>C	1.000
rpoB	761147	c.1341C>T	1.000
rpoB	761150	c.1344A>T	1.000
rpoB	761165	c.1359G>C	1.000
rpoB	761171	c.1365C>T	1.000
rpoB	761178	p.Ser458Thr	1.000
rpoB	761186	p.Glu460Asp	1.000
rpoB	761189	c.1383T>C	1.000
rpoB	761195	c.1389G>C	1.000
rpoB	761198	c.1392G>C	1.000
rpoB	761219	c.1413G>C	1.000
rpoB	761234	c.1428G>C	1.000
rpoB	761246	c.1440C>T	0.986
rpoB	761249	c.1443A>G	1.000
rpoB	761255	c.1449T>G	1.000
rpoB	761258	c.1452G>A	0.984
rpoB	761261	c.1455G>C	0.954
rpoB	761264	c.1458C>G	0.955
rpoB	761273	c.1467T>C	1.000
rpoB	761303	c.1497G>C	0.986
rpoB	761318	c.1512G>T	1.000
rpoB	761327	c.1521A>G	1.000
rpoB	761333	c.1527G>T	0.980
rpoB	761339	c.1533C>G	0.980
rpoB	761345	c.1539G>C	1.000
rpoB	761346	p.Val514Ser	1.000
rpoB	761354	c.1548C>A	1.000
rpoB	761357	c.1551G>T	1.000
rpoB	761360	c.1554T>C	1.000
rpoB	761362	p.Ser519Thr	1.000
rpoB	761373	p.Val523His	1.000
rpoB	761384	c.1578C>G	1.000
rpoB	761393	c.1587G>A	0.917
rpoB	761516	c.1710G>C	0.971
rpoB	761528	c.1722C>T	0.976
rpoB	761531	c.1725C>T	0.951
rpoB	761537	c.1731C>G	1.000
rpoB	761555	c.1749G>C	1.000
rpoB	761558	c.1752C>G	1.000
rpoB	761564	c.1758G>C	1.000
rpoB	761570	c.1764T>C	0.982
rpoB	761573	c.1767C>G	0.966
rpoB	761579	c.1773G>C	1.000
rpoB	761612	c.1806G>T	1.000
rpoB	761615	c.1809A>C	1.000
rpoB	761636	c.1830G>T	1.000
rpoB	761645	c.1839C>G	1.000
rpoB	761657	c.1851C>T	1.000
rpoB	761666	c.1860G>C	0.973
rpoB	761669	c.1863C>T	1.000
rpoB	761675	c.1869G>T	1.000
rpoB	761681	c.1875G>A	0.967
rpoB	761682	c.1876C>T	0.967
rpoB	761687	c.1881C>T	1.000
rpoB	761690	c.1884G>C	1.000
rpoB	761693	c.1887G>C	1.000
rpoB	761705	c.1899C>A	1.000
rpoB	761891	c.2085G>C	1.000
rpoB	761909	c.2103T>C	1.000
rpoB	761912	c.2106T>C	1.000
rpoB	761915	p.Asp703Glu	1.000
rpoB	761916	p.Asp704Asn	1.000
rpoB	761924	c.2118G>A	1.000
rpoB	761930	c.2124G>C	1.000
rpoB	761933	c.2127G>C	1.000
rpoB	761936	c.2130C>T	1.000
rpoB	761948	c.2142G>C	1.000
rpoB	761954	c.2148C>A	1.000
rpoB	761955	p.Ile717Val	1.000
rpoB	761969	c.2163G>A	1.000
rpoB	761990	c.2184G>C	1.000
rpoB	762008	c.2202C>T	1.000
rpoB	762014	c.2208C>G	1.000
rpoB	762038	c.2232C>T	1.000
rpoB	762047	c.2241G>A	1.000
rpoB	762053	c.2247T>C	1.000
rpoB	762056	c.2250G>A	1.000
rpoB	762065	c.2259T>G	0.980
rpoB	762083	c.2277T>C	1.000
rpoB	762086	c.2280G>C	1.000
rpoB	762101	c.2295C>G	1.000
rpoB	762114	p.Ile770Val	1.000
rpoB	762122	c.2316C>T	1.000
rpoB	762131	c.2325C>G	1.000
rpoB	762134	c.2328C>A	1.000
rpoB	762137	c.2331C>T	1.000
rpoB	762140	c.2334G>C	1.000
rpoB	762143	c.2337T>C	1.000
rpoB	762149	c.2343G>T	0.979
rpoB	762158	c.2352G>C	0.980
rpoB	762167	c.2361T>C	0.981
rpoB	762176	c.2370T>C	0.982
rpoB	762185	c.2379G>C	0.984
rpoB	762194	c.2388G>C	0.985
rpoB	762233	c.2427G>C	1.000
rpoB	762236	c.2430G>C	1.000
rpoB	762245	c.2439G>C	1.000
rpoB	762275	c.2469C>T	1.000
rpoB	762284	c.2478G>C	1.000
rpoB	762293	c.2487T>C	1.000
rpoB	762296	c.2490G>C	1.000
rpoB	762317	c.2511A>G	1.000
rpoB	762323	c.2517C>A	1.000
rpoB	762329	c.2523G>C	1.000
rpoB	762404	c.2598T>C	1.000
rpoB	762410	c.2604T>G	1.000
rpoB	762416	c.2610A>G	1.000
rpoB	762449	c.2643C>A	1.000
rpoB	762452	c.2646G>C	1.000
rpoB	762470	c.2664G>C	1.000
rpoB	762488	c.2682G>C	1.000
rpoB	762491	c.2685T>C	1.000
rpoB	762509	c.2703T>G	1.000
rpoB	762510	p.Ala902Pro	1.000
rpoB	762515	c.2709C>T	1.000
rpoB	762827	c.3021G>C	0.967
rpoB	762830	c.3024C>T	0.970
rpoB	762857	c.3051C>G	1.000
rpoB	762860	c.3054G>C	1.000
rpoB	762863	c.3057T>C	1.000
rpoB	762866	c.3060C>T	1.000
rpoB	762879	p.Met1025Leu	1.000
rpoB	762894	c.3088C>T	1.000
rpoB	762899	c.3093G>C	1.000
rpoB	762917	c.3111C>G	1.000
rpoB	762920	c.3114C>T	1.000
rpoB	762923	c.3117C>G	1.000
rpoB	762929	c.3123G>C	1.000
rpoB	762959	c.3153G>C	1.000
rpoB	762962	c.3156C>T	1.000
rpoB	762995	c.3189G>T	0.985
rpoB	763031	c.3225T>G	1.000
rpoB	763034	c.3228C>G	1.000
rpoB	763040	c.3234C>G	1.000
rpoB	763070	c.3264T>C	1.000
rpoB	763082	c.3276C>T	1.000
rpoB	763088	c.3282C>G	1.000
rpoB	763094	c.3288G>C	1.000
rpoB	763115	c.3309T>C	1.000
rpoB	763127	c.3321G>C	1.000
rpoB	763136	c.3330C>T	1.000
rpoB	763145	c.3339G>A	1.000
rpoB	763157	c.3351G>T	1.000
rpoB	763166	c.3360A>G	1.000
rpoB	763172	c.3366G>C	1.000
rpoB	763193	c.3387C>G	1.000
rpoC	763450	c.81G>A	0.978
rpoC	763456	c.87A>G	1.000
rpoC	763468	c.99G>C	1.000
rpoC	763486	c.117T>C	0.985
rpoC	763492	c.123G>C	0.986
rpoC	763528	c.159G>A	0.987
rpoC	763531	c.162G>T	0.987
rpoC	763546	c.177A>G	0.988
rpoC	763570	c.201G>C	0.986
rpoC	763594	c.225C>T	0.986
rpoC	763633	c.264T>C	1.000
rpoC	763657	c.288G>A	1.000
rpoC	763660	c.291T>G	1.000
rpoC	763666	c.297G>C	0.964
rpoC	763669	c.300C>G	0.982
rpoC	763675	c.306C>G	0.981
rpoC	763699	c.330G>T	0.971
rpoC	763702	c.333C>G	0.971
rpoC	763708	c.339G>C	0.968
rpoC	763711	c.342G>C	0.968
rpoC	763714	c.345G>C	0.968
rpoC	763717	c.348T>C	0.968
rpoC	763723	c.354G>C	0.968
rpoC	763732	c.363C>A	0.931
rpoC	763741	c.372C>T	0.955
rpoC	763744	c.375G>C	0.955
rpoC	763747	c.378G>A	0.955
rpoC	763765	c.396T>C	0.923
rpoC	763891	c.522G>C	0.818
rpoC	763894	c.525A>G	0.818
rpoC	763900	c.531G>C	0.944
rpoC	763933	c.564C>T	0.973
rpoC	763940	p.Ala191Ser	0.947
rpoC	763945	c.576T>C	0.947
rpoC	763947	p.Ala193Val	0.947
rpoC	763951	c.582G>C	0.923
rpoC	763960	c.591T>G	0.947
rpoC	763969	c.600C>T	0.923
rpoC	763987	c.618C>T	0.917
rpoC	763991	p.Ile208Leu	0.913
rpoC	763996	c.627T>C	0.864
rpoC	763999	c.630C>T	0.864
rpoC	764002	c.633C>G	0.864
rpoC	764003	p.Ala212Ser	0.864
rpoC	764024	c.655T>C	0.939
rpoC	764029	p.Glu220Asp	0.880
rpoC	764032	p.Asp221Glu	0.880
rpoC	764040	p.Ser224Thr	0.906
rpoC	764044	c.675T>C	0.970
rpoC	764054	c.685C>T	0.939
rpoC	764059	c.690G>T	0.971
rpoC	764083	c.714A>G	0.972
rpoC	764084	p.Asn239Val	0.972
rpoC	764095	c.726C>T	1.000
rpoC	764098	c.729A>G	1.000
rpoC	764143	c.774G>C	1.000
rpoC	764147	p.Ser260Ala	1.000
rpoC	764150	p.Ile261Val	1.000
rpoC	764165	p.Glu266Gln	1.000
rpoC	764176	c.807C>T	1.000
rpoC	764177	p.Ile270Leu	0.909
rpoC	764182	c.813C>T	1.000
rpoC	764311	c.942C>G	1.000
rpoC	764317	c.948C>G	1.000
rpoC	764320	c.951C>G	1.000
rpoC	764338	c.969G>A	1.000
rpoC	764353	c.984G>T	1.000
rpoC	764365	c.996C>T	1.000
rpoC	764371	c.1002G>C	1.000
rpoC	764377	c.1008C>G	1.000
rpoC	764380	c.1011G>C	1.000
rpoC	764387	c.1018T>C	1.000
rpoC	764405	c.1036A>C	1.000
rpoC	764428	c.1059G>C	1.000
rpoC	764431	c.1062G>C	1.000
rpoC	764434	c.1065A>G	1.000
rpoC	764435	c.1066A>C	1.000
rpoC	764458	c.1089G>C	1.000
rpoC	764461	c.1092A>G	1.000
rpoC	764497	c.1128A>G	1.000
rpoC	764510	c.1141C>T	1.000
rpoC	764524	c.1155C>G	1.000
rpoC	764530	c.1161C>G	1.000
rpoC	764534	c.1165C>A	1.000
rpoC	764539	c.1170C>T	1.000
rpoC	764542	c.1173C>T	1.000
rpoC	764545	c.1176C>A	1.000
rpoC	764560	c.1191T>C	1.000
rpoC	764575	c.1206T>G	1.000
rpoC	764611	c.1242G>T	1.000
rpoC	764626	c.1257C>T	1.000
rpoC	764632	c.1263T>C	1.000
rpoC	764650	c.1281G>T	1.000
rpoC	764668	c.1299C>T	0.984
rpoC	764692	c.1323C>T	0.984
rpoC	764713	c.1344G>T	1.000
rpoC	764716	c.1347G>C	1.000
rpoC	764746	c.1377G>T	1.000
rpoC	764752	c.1383G>C	1.000
rpoC	764758	c.1389C>G	1.000
rpoC	764764	c.1395T>C	1.000
rpoC	764791	c.1422C>G	0.980
rpoC	764803	c.1434C>T	1.000
rpoC	764809	c.1440C>T	1.000
rpoC	764810	p.Pro481Ala	1.000
rpoC	764815	c.1446A>G	1.000
rpoC	764824	c.1455T>C	1.000
rpoC	764827	c.1458G>C	1.000
rpoC	764858	c.1489T>C	1.000
rpoC	764869	c.1500C>T	1.000
rpoC	764875	c.1506C>A	1.000
rpoC	764887	c.1518G>C	1.000
rpoC	764888	c.1519T>C	1.000
rpoC	764896	c.1527C>T	1.000
rpoC	764911	c.1542A>G	1.000
rpoC	764912	p.Met515Gln	1.000
rpoC	764932	c.1563C>A	1.000
rpoC	764948	c.1579T>C	1.000
rpoC	764968	c.1599T>C	1.000
rpoC	765004	c.1635G>C	1.000
rpoC	765007	c.1638T>G	1.000
rpoC	765008	c.1639T>C	1.000
rpoC	765011	c.1642A>T	1.000
rpoC	765016	c.1647C>G	0.947
rpoC	765019	c.1650A>G	0.947
rpoC	765040	c.1671T>C	0.968
rpoC	765041	c.1672T>C	0.968
rpoC	765047	c.1678T>C	0.968
rpoC	765055	c.1686C>G	0.967
rpoC	765073	c.1704G>C	0.944
rpoC	765076	c.1707A>G	0.944
rpoC	765079	c.1710T>G	0.944
rpoC	765082	c.1713G>C	0.944
rpoC	765085	c.1716T>C	0.944
rpoC	765089	c.1720T>C	0.944
rpoC	765100	c.1731G>C	0.938
rpoC	765103	c.1734G>T	0.938
rpoC	765121	c.1752G>T	0.857
rpoC	765129	p.Tyr587Phe	0.929
rpoC	765143	p.Val592Ile	1.000
rpoC	765352	c.1983G>C	1.000
rpoC	765356	p.Met663Val	1.000
rpoC	765370	c.2001G>C	1.000
rpoC	765379	c.2010G>C	1.000
rpoC	765382	c.2013G>T	1.000
rpoC	765383	p.Met672Leu	1.000
rpoC	765403	c.2034G>C	1.000
rpoC	765405	p.Leu679His	1.000
rpoC	765409	c.2040T>G	1.000
rpoC	765421	c.2052C>G	1.000
rpoC	765449	p.Ala694Ser	1.000
rpoC	765454	c.2085C>G	1.000
rpoC	765469	c.2100G>C	1.000
rpoC	765478	c.2109T>G	0.984
rpoC	765480	p.Tyr704Phe	1.000
rpoC	765499	c.2130C>G	1.000
rpoC	765517	c.2148C>G	1.000
rpoC	765533	p.Tyr722His	1.000
rpoC	765544	c.2175C>G	1.000
rpoC	765547	c.2178C>T	1.000
rpoC	765548	c.2179A>T	1.000
rpoC	765553	c.2184C>T	1.000
rpoC	765556	c.2187G>C	1.000
rpoC	765562	c.2193G>T	1.000
rpoC	765826	c.2457T>C	1.000
rpoC	765835	c.2466C>T	0.978
rpoC	765841	c.2472G>T	0.980
rpoC	765861	p.Phe831Tyr	0.982
rpoC	765875	p.Val836Ile	0.983
rpoC	765907	c.2538G>T	0.984
rpoC	765910	c.2541G>C	0.984
rpoC	765928	c.2559C>G	0.982
rpoC	765940	c.2571A>T	0.980
rpoC	765947	c.2578T>C	0.980
rpoC	765962	c.2593T>C	0.962
rpoC	765967	c.2598C>T	0.958
rpoC	765973	c.2604C>G	0.955
rpoC	765979	c.2610C>G	0.952
rpoC	765982	c.2613C>T	0.952
rpoC	765994	c.2625A>T	1.000
rpoC	766003	c.2634G>C	1.000
rpoC	766009	c.2640G>C	1.000
rpoC	766012	c.2643C>G	1.000
rpoC	766321	c.2952C>G	1.000
rpoC	766333	c.2964G>C	1.000
rpoC	766345	c.2976T>C	1.000
rpoC	766348	c.2979A>G	1.000
rpoC	766351	c.2982C>G	1.000
rpoC	766353	p.Val995Ala	1.000
rpoC	766369	c.3000C>G	1.000
rpoC	766375	c.3006C>G	1.000
rpoC	766381	c.3012C>T	1.000
rpoC	766384	c.3015A>G	1.000
rpoC	766390	c.3021C>T	1.000
rpoC	766393	c.3024C>T	1.000
rpoC	766408	c.3039C>T	0.983
rpoC	766435	p.Glu1022Asp	0.966
rpoC	766501	c.3132G>C	0.917
rpoC	766507	c.3138C>T	0.920
rpoC	766513	c.3144C>T	0.926
rpoC	766522	c.3153C>A	0.926
rpoC	766528	c.3159T>G	0.926
rpoC	766531	c.3162G>C	0.926
rpoC	766534	c.3165C>G	0.926
rpoC	766537	c.3168G>A	0.923
rpoC	766540	p.Asp1057Glu	0.926
rpoC	766549	c.3180G>C	0.957
rpoC	766570	c.3201T>C	0.980
rpoC	766573	c.3204T>G	0.980
rpoC	766594	c.3225G>T	1.000
rpoC	766607	p.Ile1080Leu	1.000
rpoC	766618	c.3249G>T	1.000
rpoC	766624	c.3255G>C	1.000
rpoC	766630	c.3261G>C	1.000
rpoC	766633	c.3264G>C	1.000
rpoC	766645	c.3276A>G	1.000
rpoC	766651	c.3282T>C	1.000
rpoC	766792	c.3423C>G	0.903
rpoC	766799	p.Ala1144Ser	0.903
rpoC	766804	c.3435A>G	0.903
rpoC	766837	c.3468G>C	0.903
rpoC	766843	c.3474T>G	0.903
rpoC	766846	c.3477C>A	0.903
rpoC	766858	c.3489C>T	0.903
rpoC	766861	c.3492G>C	0.903
rpoC	766867	c.3498C>G	0.966
rpoC	766876	c.3507C>T	0.966
rpoC	766931	p.Ala1188Ser	0.977
rpoC	766942	c.3573C>T	1.000
rpoC	766945	c.3576A>C	1.000
rpoC	766963	c.3594T>C	1.000
rpoC	766996	c.3627C>T	0.986
rpoC	767002	c.3633G>C	0.987
rpoC	767008	c.3639G>A	0.987
rpoC	767023	c.3654C>T	0.986
rpoC	767044	c.3675G>C	0.985
rpoC	767080	c.3711G>C	0.985
rpoC	767098	c.3729T>C	0.981
rpoC	767100	p.Lys1244Arg	0.980
rpoC	767104	c.3735C>G	0.980
rpoC	767107	c.3738C>T	0.980
rpoC	767119	c.3750A>G	0.981
rpoC	767125	c.3756G>C	0.980
rpoC	767134	c.3765C>T	1.000
rpoC	767138	c.3769C>T	1.000
rpoC	767149	c.3780C>T	1.000
rpoC	767158	c.3789T>C	1.000
rpoC	767179	c.3810C>T	1.000
rpoC	767180	p.Ala1271Ser	1.000
rpoC	767191	c.3822C>G	1.000
rpoC	767197	c.3828G>A	0.980
rpoC	767203	c.3834C>G	0.976
rpoC	767206	c.3837C>G	0.976
rpoC	767209	c.3840T>C	0.977
rpoC	767212	c.3843G>C	0.978
rpoC	767221	c.3852C>G	0.984
rpoC	767230	c.3861G>C	0.984
rpoC	767233	c.3864T>C	0.984
rpoC	767254	c.3885G>C	0.985
rpoC	767264	p.Ala1299Ser	0.982
rpoC	767267	p.Ala1300Asn	0.982
rpoC	767281	c.3912C>G	0.981
rpoC	767284	c.3915C>G	0.981
rpsL	781559	c.-1G>C	0.971
rpsL	781572	p.Gln5Asn	0.974
rpsL	781586	c.27C>T	0.978
rpsL	781595	c.36T>C	0.980
rpsL	781608	p.Ser17Ala	0.980
rpsL	781616	c.57C>G	0.983
rpsL	781628	c.69T>C	0.985
rpsL	781649	c.90T>C	0.986
rpsL	781655	c.96T>C	0.985
rpsL	781658	c.99A>C	0.985
rpsL	781670	c.111G>C	0.983
rpsL	781706	c.147T>C	1.000
rpsL	781715	c.156T>G	1.000
rpsL	781772	c.213C>T	1.000
rpsL	781802	c.243G>C	0.962
rpsL	781805	c.246G>A	0.931
rpsL	781814	c.255C>T	0.971
rpsL	781817	c.258G>T	0.972
rpsL	781829	c.270G>C	0.975
rpsL	781832	c.273T>C	0.976
rpsL	781859	c.300T>C	0.930
rpsL	781868	c.309T>C	0.923
rpsL	781871	c.312G>C	0.923
rpsL	781877	c.318T>A	0.921
rpsL	781892	c.333A>G	0.919
rpsL	781898	c.339A>T	0.914
rpsL	781907	c.348T>C	0.912
rpsL	781916	c.357T>C	0.879
rpsL	781929	p.Gly124Ser	0.852
rpsL	781933	374G>A	0.840
rplC	800796	c.-13ATTGG>A	1.000
rrs	1471922	r.77gt>g	0.965
rrs	1471925	r.80t>c	0.979
rrs	1471931	r.86ga>g	0.980
rrs	1471934	r.89a>g	0.980
rrs	1471985	r.140t>c	0.982
rrs	1471986	r.141c>t	0.982
rrs	1472030	r.185g>a	1.000
rrs	1472031	r.186g>c	1.000
rrs	1472032	r.187g>a	1.000
rrs	1472033	r.188a>c	1.000
rrs	1472035	r.190g>t	1.000
rrs	1472040	r.195t>g	1.000
rrs	1472041	r.196c>t	1.000
rrs	1472042	r.197t>g	1.000
rrs	1472043	r.198t>a	1.000
rrs	1472050	r.205g>c	1.000
rrs	1472061	r.216a>t	1.000
rrs	1472106	r.261g>a	1.000
rrs	1472108	r.263c>t	1.000
rrs	1472113	r.268t>c	0.980
rrs	1472150	r.305t>a	1.000
rrs	1472251	r.406g>a	1.000
rrs	1472337	r.492c>g	1.000
rrs	1472380	r.535g>c	1.000
rrs	1472446	r.601t>a	0.986
rrs	1472452	r.607g>a	0.986
rrs	1472464	r.619a>g	0.986
rrs	1472612	r.767g>t	0.985
rrs	1472734	r.889c>t	0.985
rrs	1472741	r.896g>a	0.983
rrs	1472846	r.1001c>t	1.000
rrs	1472847	r.1002g>a	1.000
rrs	1472848	r.1003t>c	1.000
rrs	1472860	r.1015c>t	1.000
rrs	1472861	r.1016g>a	1.000
rrs	1472956	r.1111t>c	1.000
rrs	1472957	r.1112c>t	0.970
rrs	1472969	r.1124a>g	1.000
rrs	1472970	r.1125c>g	1.000
rrs	1472977	r.1132g>c	1.000
rrs	1472978	r.1133t>c	1.000
rrs	1472989	r.1144g>a	1.000
rrs	1472990	r.1145a>g	1.000
rrs	1473082	r.1237g>a	0.977
rrs	1473088	r.1243a>g	0.976
rrs	1473099	r.1254t>a	0.970
rrs	1473104	r.1259c>t	0.968
rrs	1473105	r.1260g>a	0.968
rrs	1473110	r.1265t>g	0.967
rrs	1473111	r.1266a>g	0.967
rrs	1473121	r.1276t>c	0.947
rrs	1473123	r.1278a>t	0.973
rrs	1473129	r.1284c>t	0.975
rrs	1473145	r.1300c>t	0.978
rrs	1473166	r.1321g>a	0.981
rrs	1473288	r.1443c>t	1.000
rrs	1473290	r.1445c>t	1.000
rrs	1473291	r.1446g>t	1.000
rrl	1473684	r.27g>a	1.000
rrl	1473695	r.38a>ac	1.000
rrl	1473697	r.40c>a	1.000
rrl	1473699	r.42ag>a	1.000
rrl	1473707	r.50t>a	1.000
rrl	1473717	r.60g>a	1.000
rrl	1473731	r.74t>a	1.000
rrl	1473746	r.89t>c	1.000
rrl	1473756	r.99g>t	1.000
rrl	1473758	r.101g>t	1.000
rrl	1473770	r.113t>c	1.000
rrl	1473806	r.149c>t	1.000
rrl	1473812	r.155g>a	0.980
rrl	1473814	r.157a>t	1.000
rrl	1473815	r.158t>g	1.000
rrl	1473829	r.172g>c	1.000
rrl	1473831	r.174g>t	1.000
rrl	1473832	r.175c>t	1.000
rrl	1473839	r.182g>a	1.000
rrl	1473876	r.219g>a	1.000
rrl	1473887	r.230t>c	1.000
rrl	1473888	r.231t>c	1.000
rrl	1473898	r.241c>t	1.000
rrl	1473899	r.242a>g	1.000
rrl	1473916	r.259c>a	1.000
rrl	1473923	r.266c>g	1.000
rrl	1473924	r.267a>at	1.000
rrl	1473937	r.280c>t	1.000
rrl	1473943	r.286g>t	1.000
rrl	1473945	r.288t>a	0.955
rrl	1473946	r.289a>t	0.955
rrl	1473950	r.293g>t	0.955
rrl	1474074	r.417c>t	0.944
rrl	1474089	r.432c>t	0.944
rrl	1474093	r.436g>a	0.944
rrl	1474100	r.443c>t	1.000
rrl	1474103	r.446a>c	1.000
rrl	1474130	r.473c>t	1.000
rrl	1474140	r.483c>t	1.000
rrl	1474151	r.494c>t	1.000
rrl	1474181	r.524c>ct	0.880
rrl	1474184	r.527c>a	1.000
rrl	1474185	r.528ga>g	1.000
rrl	1474249	r.592g>t	1.000
rrl	1474263	r.606g>a	1.000
rrl	1474282	r.625g>a	1.000
rrl	1474306	r.649a>c	1.000
rrl	1474308	r.651g>t	1.000
rrl	1474310	r.653t>g	1.000
rrl	1474356	r.699t>c	1.000
rrl	1474362	r.705a>g	1.000
rrl	1474387	r.730c>t	1.000
rrl	1474413	r.756a>c	1.000
rrl	1474415	r.758ccacacgcgcatacgcgcgtgtga>c	1.000
rrl	1474496	r.839c>g	0.981
rrl	1474497	r.840g>c	0.981
rrl	1474506	r.849c>g	0.981
rrl	1474507	r.850g>c	0.981
rrl	1474626	r.969t>c	1.000
rrl	1474632	r.975g>t	1.000
rrl	1474636	r.979a>t	1.000
rrl	1474637	r.980c>t	1.000
rrl	1474638	r.981c>g	1.000
rrl	1474639	r.982g>t	1.000
rrl	1474640	r.983c>t	1.000
rrl	1474710	r.1053tggtg>t	1.000
rrl	1474717	r.1060a>g	0.971
rrl	1474722	r.1065t>c	0.971
rrl	1474743	r.1086t>g	0.980
rrl	1474760	r.1103a>g	0.980
rrl	1474794	r.1137c>t	0.982
rrl	1474803	r.1146g>a	0.983
rrl	1474812	r.1155g>a	0.983
rrl	1474830	r.1173a>g	0.984
rrl	1474913	r.1256t>c	1.000
rrl	1474932	r.1275c>t	1.000
rrl	1475031	r.1374g>c	0.964
rrl	1475061	r.1404ca>c	0.975
rrl	1475076	r.1419c>a	0.976
rrl	1475090	r.1433a>t	0.979
rrl	1475114	r.1457c>t	0.981
rrl	1475120	r.1463g>t	0.981
rrl	1475129	r.1472g>a	0.982
rrl	1475202	r.1545g>c	1.000
rrl	1475209	r.1552g>a	1.000
rrl	1475213	r.1556c>t	1.000
rrl	1475220	r.1563g>t	1.000
rrl	1475429	r.1772g>a	1.000
rrl	1475443	r.1786g>a	1.000
rrl	1475452	r.1795c>a	1.000
rrl	1475475	r.1818c>t	1.000
rrl	1475479	r.1822c>t	1.000
rrl	1475480	r.1823a>t	1.000
rrl	1475505	r.1848g>a	1.000
rrl	1475526	r.1869c>a	1.000
rrl	1475531	r.1874c>t	1.000
rrl	1475573	r.1916g>a	1.000
rrl	1475649	r.1992a>g	1.000
rrl	1475659	r.2002g>a	1.000
rrl	1475760	r.2103ccg>c	1.000
rrl	1475764	r.2107a>t	1.000
rrl	1475765	r.2108a>t	1.000
rrl	1475975	r.2318c>t	0.978
rrl	1475977	r.2320a>g	0.978
rrl	1475988	r.2331a>g	0.971
rrl	1475989	r.2332t>c	0.971
rrl	1475993	r.2336c>t	0.971
rrl	1475997	r.2340a>t	0.971
rrl	1476085	r.2428g>a	1.000
rrl	1476086	r.2429g>a	1.000
rrl	1476088	r.2431a>c	1.000
rrl	1476099	r.2442a>g	1.000
rrl	1476103	r.2446c>g	0.944
rrl	1476105	r.2448g>a	0.944
rrl	1476106	r.2449a>t	0.944
rrl	1476110	r.2453g>c	0.944
rrl	1476114	r.2457t>c	0.944
rrl	1476115	r.2458t>c	0.947
rrl	1476131	r.2474c>t	0.973
rrl	1476160	r.2503t>c	0.979
rrl	1476214	r.2557g>t	1.000
rrl	1476215	r.2558c>t	1.000
rrl	1476221	r.2564t>c	1.000
rrl	1476224	r.2567a>g	1.000
rrl	1476251	r.2594t>c	0.978
rrl	1476281	r.2624t>c	0.982
rrl	1476297	r.2640c>t	0.981
rrl	1476299	r.2642c>t	0.981
rrl	1476584	r.2927c>t	1.000
rrl	1476594	r.2937c>t	1.000
rrl	1476597	r.2940g>a	1.000
rrl	1476603	r.2946g>a	1.000
rrl	1476608	r.2951c>g	1.000
rrl	1476619	r.2962c>t	1.000
rrl	1476628	r.2971t>a	1.000
rrl	1476665	r.3008t>a	1.000
rrl	1476666	r.3009c>t	1.000
rrl	1476674	r.3017t>c	1.000
rpsA	1833536	c.-6A>C	1.000
rpsA	1833538	c.-4CA>C	1.000
rpsA	1833541	c.-1T>C	1.000
rpsA	1833547	c.6G>A	1.000
rpsA	1833589	c.48A>C	1.000
rpsA	1833595	c.54T>G	1.000
rpsA	1833596	p.Ser19Ala	1.000
rpsA	1833604	c.63C>T	1.000
rpsA	1833616	c.75A>T	1.000
rpsA	1833619	c.78A>C	1.000
rpsA	1833625	c.84A>G	1.000
rpsA	1833664	c.123C>G	1.000
rpsA	1833676	c.135A>G	1.000
rpsA	1833679	c.138G>T	1.000
rpsA	1833685	c.144G>C	1.000
rpsA	1833691	c.150G>A	1.000
rpsA	1833694	c.153G>T	1.000
rpsA	1833697	c.156C>T	1.000
rpsA	1833700	c.159C>T	1.000
rpsA	1833709	c.168C>T	1.000
rpsA	1833724	c.183C>T	1.000
rpsA	1833727	c.186G>C	1.000
rpsA	1833733	c.192C>G	1.000
rpsA	1833734	p.Ala65Ser	1.000
rpsA	1833742	c.201A>G	1.000
rpsA	1833745	c.204G>C	1.000
rpsA	1833748	c.207C>G	1.000
rpsA	1833760	c.219C>T	1.000
rpsA	1833787	c.246C>G	0.983
rpsA	1833790	c.249T>C	0.983
rpsA	1833802	c.261A>G	0.984
rpsA	1833811	c.270G>T	0.985
rpsA	1833823	c.282G>A	0.984
rpsA	1833832	c.291G>A	0.984
rpsA	1833838	c.297G>C	0.984
rpsA	1833841	c.300C>G	0.984
rpsA	1833847	c.306C>G	0.984
rpsA	1833856	c.315A>G	0.984
rpsA	1833862	c.321G>T	0.985
rpsA	1833874	c.333T>G	0.985
rpsA	1833886	c.345C>G	0.968
rpsA	1833894	p.Ala118Glu	0.984
rpsA	1833928	c.387G>C	1.000
rpsA	1833949	c.408T>C	1.000
rpsA	1833961	c.420C>G	0.987
rpsA	1833970	c.429G>T	0.987
rpsA	1833979	c.438T>C	0.987
rpsA	1833991	c.450C>G	0.987
rpsA	1834000	c.459G>C	0.976
rpsA	1834009	c.468C>T	0.986
rpsA	1834012	c.471G>C	0.986
rpsA	1834015	c.474G>C	0.986
rpsA	1834021	c.480C>T	0.988
rpsA	1834030	c.489C>G	0.988
rpsA	1834033	c.492C>T	0.987
rpsA	1834073	p.Lys178Arg	1.000
rpsA	1834096	c.555G>C	0.981
rpsA	1834099	c.558C>G	1.000
rpsA	1834108	c.567C>G	1.000
rpsA	1834114	c.573G>C	1.000
rpsA	1834177	c.636A>C	1.000
rpsA	1834228	c.687C>A	1.000
rpsA	1834231	c.690T>G	1.000
rpsA	1834234	c.693G>T	1.000
rpsA	1834240	c.699T>C	1.000
rpsA	1834246	c.705G>T	1.000
rpsA	1834249	c.708T>C	1.000
rpsA	1834252	c.711C>G	1.000
rpsA	1834261	c.720A>G	1.000
rpsA	1834264	c.723G>C	1.000
rpsA	1834279	c.738C>T	1.000
rpsA	1834294	c.753G>T	1.000
rpsA	1834297	c.756C>T	1.000
rpsA	1834303	c.762T>G	1.000
rpsA	1834306	c.765T>C	1.000
rpsA	1834327	c.786G>T	1.000
rpsA	1834357	c.816T>C	1.000
rpsA	1834366	c.825A>G	1.000
rpsA	1834375	c.834G>C	1.000
rpsA	1834396	c.855G>C	1.000
rpsA	1834411	c.870T>G	1.000
rpsA	1834414	c.873C>T	1.000
rpsA	1834417	c.876G>C	1.000
rpsA	1834420	c.879C>T	1.000
rpsA	1834423	c.882G>C	1.000
rpsA	1834429	c.888C>T	1.000
rpsA	1834438	c.897C>T	1.000
rpsA	1834451	c.910T>C	1.000
rpsA	1834456	c.915T>G	1.000
rpsA	1834468	c.927A>G	1.000
rpsA	1834477	c.936C>T	1.000
rpsA	1834489	c.948T>C	1.000
rpsA	1834519	c.978G>C	1.000
rpsA	1834520	p.Ala327Ser	1.000
rpsA	1834528	c.987T>C	0.982
rpsA	1834534	c.993C>T	1.000
rpsA	1834543	c.1002C>G	1.000
rpsA	1834546	c.1005T>C	1.000
rpsA	1834552	c.1011G>T	1.000
rpsA	1834555	c.1014T>G	1.000
rpsA	1834557	p.Ala339Gly	1.000
rpsA	1834606	c.1065C>T	1.000
rpsA	1834609	c.1068T>C	1.000
rpsA	1834619	c.1078T>C	1.000
rpsA	1834622	c.1081T>A	0.978
rpsA	1834633	c.1092A>G	1.000
rpsA	1834639	c.1098T>C	1.000
rpsA	1834645	c.1104C>T	1.000
rpsA	1834666	c.1125G>C	1.000
rpsA	1834667	p.Ala376Ser	1.000
rpsA	1834690	c.1149T>C	1.000
rpsA	1834700	p.Gln387Ala	1.000
rpsA	1834705	c.1164C>G	1.000
rpsA	1834720	c.1179C>G	1.000
rpsA	1834732	c.1191T>C	0.984
rpsA	1834738	c.1197A>G	1.000
rpsA	1834753	c.1212T>C	1.000
rpsA	1834759	c.1218A>C	1.000
rpsA	1834765	p.Glu408Asp	1.000
rpsA	1834774	c.1233C>T	0.978
rpsA	1834776	p.Ala412Glu	0.978
rpsA	1834780	c.1239A>G	0.978
rpsA	1834789	c.1248T>C	0.978
rpsA	1834813	c.1272G>T	0.974
rpsA	1834830	p.Ala430Val	0.966
kasA	2518738	c.624G>C	1.000
kasA	2518756	c.642G>C	1.000
kasA	2518768	c.654C>G	1.000
kasA	2518771	c.657C>A	1.000
kasA	2518774	c.660C>T	1.000
kasA	2518783	c.669T>G	1.000
kasA	2518787	p.Arg225Lys	0.968
kasA	2518792	c.678C>T	0.968
kasA	2518795	c.681C>T	0.968
kasA	2518798	c.684G>C	0.969
kasA	2518822	c.708C>A	0.982
kasA	2518825	c.711T>C	0.982
kasA	2518846	c.732G>T	0.962
kasA	2518849	c.735G>C	0.961
kasA	2518853	p.Leu247Val	0.960
kasA	2518864	c.750G>C	0.952
panD	4044138	c.144A>G	0.923
panD	4044150	c.132T>G	1.000
panD	4044156	c.126T>C	1.000
panD	4044167	c.115G>A	1.000
panD	4044171	c.111G>A	1.000
panD	4044174	c.108G>A	1.000
panD	4044180	p.Asp34Glu	1.000
panD	4044188	c.94C>G	1.000
panD	4044189	c.93G>A	1.000
panD	4044194	p.Ala30Pro	1.000
panD	4044195	c.87A>G	1.000
panD	4044233	p.Cys17His	1.000
panD	4044234	c.48G>C	1.000
panD	4044249	c.33G>A	1.000
panD	4044266	p.Leu6Met	1.000
panD	4044273	c.9C>G	1.000
panD	4044276	p.Leu2Phe	1.000
embC	4240729	c.867C>G	1.000
embC	4240735	c.873C>G	1.000
embC	4240741	c.879C>T	1.000
embC	4240756	c.894G>C	0.988
embC	4240771	c.909G>C	0.982
embC	4240772	p.Ser304Ala	0.981
embC	4240778	p.His306Gly	0.981
embC	4240781	p.Ala307Ser	0.981
embC	4240789	c.927T>C	0.986
embC	4240819	c.957A>C	0.984
embC	4240826	p.Ala322Ser	0.983
embC	4240831	c.969T>G	0.983
embC	4240856	p.Ala332Thr	0.973
embC	4240859	p.Leu333Ile	0.973
embC	4240876	c.1014C>T	0.970
embC	4240879	c.1017G>T	0.967
embC	4240885	c.1023T>C	0.964
embC	4240886	p.Ile342Val	0.964
embC	4240897	c.1035C>G	0.958
embC	4240900	c.1038A>G	0.955
embC	4240909	c.1047G>C	1.000
embB	4248220	c.1707A>G	0.939
embB	4248226	c.1713G>C	0.969
embB	4248232	c.1719G>T	0.969
embB	4248233	p.Leu574Val	0.969
embB	4248236	p.Met575Leu	0.972
embB	4248245	p.Ile578Val	0.980
embB	4248250	c.1737C>T	0.981
embB	4248259	p.Met582Ile	0.981
embB	4248275	p.Thr588Ala	0.981
embB	4248292	c.1779G>A	0.981