TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5d8086a82b225
Sample: 5d8086a82b225

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Summary
ID: 5d8086a82b225
Date: Tue Sep 17 08:56:36 2019
Strain: lineage7;lineage4.3;lineage2.2;lineage4.1.1;lineage2.2.1;lineage4.1.1.1
Drug-resistance: MDR

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkatG p.Ser315Thr (0.96)
RifampicinRrpoB p.Leu430Pro (0.32)
EthambutolRembA c.-16C>T (0.91), embB p.Met306Val (0.32), embB p.His312Arg (0.77), embB p.Leu359Ile (0.42), embB p.Ala388Gly (0.31), embB p.Asn399Asp (0.43), embB p.Ala659Thr (0.54)
PyrazinamideRpncA p.Asp8Asn (1.00)
StreptomycinRrpsL p.Lys43Arg (0.28), rrs r.462c>t (0.71)
Ethionamide
FluoroquinolonesRgyrA p.Asp94Ala (1.00)
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage7Lineage 7NoneNone
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage4.1.1.1Euro-American (X-type)X2RD183

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB6082c.843G>A0.449
gyrB6086p.Thr283Pro0.449
gyrB6091c.852G>C0.431
gyrB6100c.861G>C0.510
gyrB6115c.876A>G0.538
gyrB6123p.Ala295Gly0.547
gyrB6127c.888G>C0.569
gyrB6130c.891T>C0.569
gyrB6136c.897G>A0.585
gyrB6139c.900G>C0.596
gyrB6196c.957C>T0.733
gyrB6238c.999G>A0.766
gyrB6242p.Arg335Lys0.766
gyrB6250c.1011A>G0.817
gyrB6256c.1017G>A0.828
gyrB6268c.1029C>G0.824
gyrB6280c.1041T>C0.829
gyrB6286c.1047T>C0.812
gyrB6289c.1050C>T0.800
gyrB6292c.1053G>C0.797
gyrB6307c.1068T>G0.786
gyrB6319c.1080G>C0.768
gyrB6362c.1123T>C0.721
gyrB6376c.1137G>A0.667
gyrB6379c.1140C>G0.679
gyrB6382c.1143A>G0.667
gyrB6388c.1149T>C0.614
gyrB6403c.1164T>C0.511
gyrB6415c.1176G>C0.395
gyrB6427c.1188T>C0.341
gyrB6430c.1191A>G0.326
gyrB6565c.1326G>C0.240
gyrB6571c.1332T>C0.261
gyrB6577c.1338T>C0.296
gyrB6580c.1341C>G0.296
gyrB6598c.1359C>G0.429
gyrB6610c.1371C>G0.424
gyrB6613c.1374A>G0.429
gyrB6616c.1377A>G0.429
gyrB6622c.1383C>T0.417
gyrB6634c.1395T>C0.447
gyrB6637c.1398T>G0.447
gyrB6640c.1401A>G0.436
gyrB6643c.1404A>G0.450
gyrB6649c.1410T>C0.533
gyrB6655c.1416T>C0.510
gyrB6670c.1431G>A0.547
gyrB6673c.1434A>C0.547
gyrB6676c.1437T>G0.558
gyrB6700c.1461T>C0.589
gyrB6703c.1464G>C0.564
gyrB6709c.1470A>G0.615
gyrB6712c.1473G>C0.607
gyrB6728c.1489C>T0.655
gyrB6742c.1503A>G0.617
gyrB6745c.1506T>G0.633
gyrB6751c.1512G>C0.645
gyrB6760c.1521G>C0.656
gyrB6763c.1524G>C0.667
gyrB6775c.1536G>C0.672
gyrB6787c.1548G>A0.615
gyrB6793c.1554T>C0.600
gyrB6797p.Gly520Thr0.588
gyrB6811c.1572C>T0.619
gyrB6841c.1602T>C0.514
gyrB6844c.1605T>C0.514
gyrB6883p.Leu548Phe0.143
gyrB6889c.1650G>T0.543
gyrB6901c.1662G>C0.571
gyrB6904c.1665C>G0.571
gyrB6910c.1671G>A0.513
gyrB6916c.1677G>C0.538
gyrB6919c.1680T>C0.553
gyrB6925c.1686T>C0.578
gyrB6931c.1692A>G0.605
gyrB6949c.1710A>G0.588
gyrB6952c.1713C>G0.600
gyrB6967c.1728T>C0.631
gyrB6973c.1734G>C0.647
gyrB6982c.1743A>C0.657
gyrB7006c.1767T>C0.579
gyrB7007c.1768C>T0.579
gyrB7010c.1771C>T0.569
gyrB7015c.1776G>A0.559
gyrB7023p.Leu595Gln0.532
gyrB7033c.1794G>C0.517
gyrB7051p.Glu604Asp0.439
gyrB7066c.1827G>C0.382
gyrB7075c.1836T>C0.382
gyrB7078c.1839A>C0.379
gyrB7084c.1845A>G0.379
gyrB7090c.1851C>T0.345
gyrB7093c.1854T>G0.379
gyrB7099c.1860G>A0.340
gyrB7108c.1869G>A0.346
gyrB7114c.1875C>A0.373
gyrB7124p.Ser629Thr0.380
gyrB7129c.1890T>C0.388
gyrB7132c.1893T>G0.388
gyrB7141c.1902T>C0.463
gyrB7147c.1908G>C0.500
gyrB7165c.1926C>G0.581
gyrB7178c.1939T>C0.617
gyrB7186c.1947C>G0.639
gyrB7216c.1977G>C0.649
gyrB7234c.1995C>T0.617
gyrB7246c.2007T>C0.578
gyrB7252c.2013G>C0.477
gyrB7256c.2017C>T0.475
gyrA7307c.6A>T0.147
gyrA7313c.12G>C0.139
gyrA7317c.16T>C0.147
gyrA7334c.33G>C0.255
gyrA7335p.Leu12Val0.255
gyrA7347p.Glu16Gln0.314
gyrA7355c.54T>C0.314
gyrA7361c.60C>T0.314
gyrA7362p.Glu21Gln1.000
gyrA7391c.90C>T0.351
gyrA7394c.93T>C0.351
gyrA7406c.105G>C0.377
gyrA7412c.111C>G0.400
gyrA7427c.126G>C0.396
gyrA7436c.135C>T0.375
gyrA7439c.138C>T0.370
gyrA7442c.141G>C0.362
gyrA7451c.150C>G0.317
gyrA7457c.156T>C0.300
gyrA7475c.174A>G0.194
gyrA7480p.Phe60Tyr0.138
gyrA7484c.183T>C0.143
gyrA7496c.195C>G0.143
gyrA7585p.Ser95Thr1.000
gyrA7694c.393A>G0.620
gyrA7697c.396C>G0.635
gyrA7710c.409T>C0.632
gyrA7728c.427A>C0.677
gyrA7763c.462T>C0.734
gyrA7775c.474C>A0.722
gyrA7784c.483A>G0.711
gyrA7790c.489G>C0.679
gyrA7793c.492G>C0.692
gyrA7796c.495G>C0.684
gyrA7799c.498A>G0.679
gyrA7814c.513C>G0.713
gyrA7823c.522G>C0.702
gyrA7832c.531G>T0.653
gyrA7835c.534A>C0.645
gyrA7853c.552C>G0.588
gyrA7859c.558A>G0.600
gyrA7865c.564T>C0.581
gyrA7886c.585T>C0.492
gyrA7898p.Asp199Glu0.162
gyrA8069c.768T>C0.432
gyrA8078c.777A>G0.435
gyrA8090c.789C>A0.490
gyrA8096c.795T>A0.491
gyrA8099c.798T>C0.500
gyrA8111c.810G>C0.552
gyrA8121c.820T>C0.638
gyrA8129c.828T>C0.603
gyrA8135c.834C>G0.623
gyrA8156c.855T>C0.627
gyrA8177c.876A>C0.684
gyrA8198c.897T>C0.700
gyrA8207c.906T>C0.712
gyrA8219c.918T>C0.717
gyrA8225c.924T>C0.721
gyrA8234c.933T>C0.758
gyrA8247p.Ile316Val0.754
gyrA8264c.963T>C0.754
gyrA8267c.966G>C0.745
gyrA8270c.969G>C0.745
gyrA8276c.975G>A0.780
gyrA8283p.Ile328Leu0.776
gyrA8288c.987T>C0.780
gyrA8294c.993T>C0.803
gyrA8324c.1023T>C0.750
gyrA8330c.1029C>G0.744
gyrA8339c.1038A>G0.731
gyrA8340p.Ala347Ser0.744
gyrA8372c.1071G>C0.726
gyrA8375c.1074G>C0.705
gyrA8382p.Leu361Met0.684
gyrA8387c.1086C>T0.696
gyrA8391p.Tyr364His0.638
gyrA8399c.1098T>G0.617
gyrA8401p.Asp367Ala0.617
gyrA8405c.1104C>T0.617
gyrA8420c.1119T>C0.733
gyrA8442c.1141C>T0.718
gyrA8453c.1152A>C0.726
gyrA8462c.1161A>T0.667
gyrA8465c.1164C>G0.672
gyrA8471c.1170T>C0.661
gyrA8472c.1171C>T0.651
gyrA8480c.1179C>T0.623
gyrA8486c.1185T>C0.623
gyrA8504c.1203G>C0.560
gyrA8516c.1215T>C0.452
gyrA8519c.1218A>C0.439
gyrA8520c.1219C>T0.439
gyrA8528c.1227G>C0.425
gyrA8543c.1242C>G0.419
gyrA8546c.1245T>C0.469
gyrA8552c.1251C>A0.452
gyrA8561c.1260A>G0.433
gyrA8576c.1275C>G0.433
gyrA8579c.1278C>T0.452
gyrA8588c.1287G>A0.486
gyrA8597c.1296C>G0.513
gyrA8603c.1302A>G0.500
gyrA8619c.1318T>C0.604
gyrA8624c.1323G>C0.652
gyrA8636c.1335A>C0.685
gyrA8642c.1341A>G0.685
gyrA8672c.1371A>G0.695
gyrA8693c.1392T>C0.603
gyrA8696c.1395G>C0.596
gyrA8699c.1398A>G0.596
gyrA8711c.1410A>C0.593
gyrA8714c.1413A>G0.593
gyrA8729c.1428T>C0.490
gyrA8730p.Gly477Arg0.490
gyrA8740p.Arg480His0.476
gyrA8747c.1446A>G0.312
gyrA8750c.1449C>G0.286
gyrA8751p.Ala484Ser0.286
gyrA8756c.1455A>G0.296
gyrA8762c.1461G>C0.308
gyrA8767p.Arg489Lys0.308
gyrA8780p.Asp493Glu0.310
gyrA8786c.1485T>C0.269
gyrA8801c.1500G>C0.406
gyrA8807c.1506C>T0.333
gyrA8810c.1509A>G0.323
gyrA8816c.1515C>G0.412
gyrA8818p.Ser506Asn0.424
gyrA8828c.1527T>C0.500
gyrA8837c.1536C>T0.511
gyrA8852c.1551T>C0.566
gyrA8858c.1557T>C0.582
gyrA8867c.1566A>G0.574
gyrA8870c.1569G>C0.565
gyrA8873c.1572A>C0.571
gyrA8891c.1590G>A0.618
gyrA8897c.1596T>C0.640
gyrA8903c.1602T>C0.654
gyrA8933c.1632G>C0.628
gyrA8939c.1638T>C0.623
gyrA8942c.1641G>C0.592
gyrA8946c.1645T>C0.592
gyrA8966c.1665C>G0.554
gyrA8967p.Ala556Arg0.554
gyrA8987c.1686C>G0.476
gyrA8990c.1689C>G0.475
gyrA8996c.1695T>C0.448
gyrA8998p.Leu566Trp0.458
gyrA9017c.1716C>G0.500
gyrA9023c.1722A>C0.483
gyrA9029c.1728T>C0.429
gyrA9032c.1731T>C0.385
gyrA9035c.1734G>C0.400
gyrA9050p.Asp583Glu0.237
gyrA9051c.1750T>C0.237
gyrA9056c.1755C>G0.231
gyrA9062c.1761C>G0.231
gyrA9068c.1767G>C0.250
gyrA9071c.1770G>C0.250
gyrA9080c.1779G>T0.318
gyrA9089c.1788G>C0.396
gyrA9099c.1798T>C0.400
gyrA9104c.1803C>G0.400
gyrA9119c.1818A>G0.420
gyrA9122c.1821C>G0.420
gyrA9143c.1842T>C0.510
gyrA9152c.1851C>T0.436
gyrA9153p.Thr618Glu0.432
gyrA9158c.1857C>T0.432
gyrA9161c.1860C>G0.512
gyrA9182c.1881T>C0.639
gyrA9191c.1890G>C0.661
gyrA9200c.1899A>G0.691
gyrA9204p.Ser635Thr0.694
gyrA9224c.1923C>T0.685
gyrA9230c.1929T>C0.690
gyrA9233c.1932C>G0.681
gyrA9239c.1938C>T0.684
gyrA9252p.Val651Ile0.704
gyrA9284c.1983T>C0.716
gyrA9291c.1990C>T0.658
gyrA9296c.1995T>C0.658
gyrA9299c.1998G>C0.658
gyrA9300p.Ala667Ser0.658
gyrA9304p.Gly668Asp1.000
gyrA9308p.Asp669Glu0.675
gyrA9323c.2022C>A0.726
gyrA9335c.2034G>C0.727
gyrA9365c.2064G>A0.677
gyrA9374c.2073G>C0.654
gyrA9377c.2076A>G0.654
gyrA9383c.2082T>G0.647
gyrA9386c.2085T>C0.620
gyrA9395c.2094G>C0.612
gyrA9398c.2097T>C0.587
gyrA9413c.2112G>C0.512
rpoB759606c.-201T>C0.642
rpoB759629c.-178T>C0.617
rpoB759644c.-163T>A0.467
rpoB759647c.-160T>C0.429
rpoB759656c.-151A>C0.138
rpoB759667c.-140C>T0.143
rpoB759670c.-137C>T0.143
rpoB759671c.-136G>T0.143
rpoB759672c.-135G>C0.138
rpoB759683c.-124T>C0.138
rpoB759701c.-106A>T0.133
rpoB760040c.234T>C0.294
rpoB760046c.240G>C0.333
rpoB760060p.Tyr85Leu0.342
rpoB760067c.261G>C0.378
rpoB760070c.264T>G0.395
rpoB760091c.285G>C0.512
rpoB760101c.295T>C0.585
rpoB760112c.306T>C0.643
rpoB760118c.312T>G0.643
rpoB760121c.315T>C0.659
rpoB760130p.Asp108Glu0.682
rpoB760139c.333A>G0.682
rpoB760142c.336C>G0.696
rpoB760181c.375T>C0.682
rpoB760184c.378A>G0.711
rpoB760196c.390C>G0.682
rpoB760223c.417T>C0.723
rpoB760235c.429T>C0.745
rpoB760283c.477G>C0.690
rpoB760298c.492G>C0.667
rpoB760307c.501T>C0.672
rpoB760310c.504G>C0.667
rpoB760328c.522G>C0.639
rpoB760331c.525G>C0.651
rpoB760340c.534G>T0.642
rpoB760361c.555T>C0.629
rpoB760370c.564C>G0.629
rpoB760376p.Asp190Glu0.606
rpoB760380p.Thr192Leu0.587
rpoB760406c.600G>C0.688
rpoB760412c.606C>G0.714
rpoB760424c.618C>G0.759
rpoB760430c.624T>C0.779
rpoB760472c.666C>T0.771
rpoB760475c.669A>G0.780
rpoB760481c.675G>C0.808
rpoB760484c.678A>G0.818
rpoB760522p.Ser239Asn0.769
rpoB760532c.726T>C0.695
rpoB760533p.Val243Thr0.695
rpoB760541c.735G>C0.719
rpoB760547c.741G>C0.706
rpoB760563p.Arg253Met0.649
rpoB760591p.Val262Ala0.721
rpoB760611c.805T>C0.727
rpoB760646c.840C>G0.717
rpoB760655c.849A>G0.698
rpoB760661c.855A>C0.673
rpoB760670c.864G>C0.698
rpoB760674c.868T>C0.698
rpoB760679c.873A>G0.673
rpoB760683c.877T>C0.707
rpoB760715c.909C>G0.577
rpoB760718c.912C>T0.558
rpoB760724c.918T>C0.580
rpoB760730c.924T>C0.574
rpoB760751c.945G>C0.500
rpoB760757c.951T>C0.436
rpoB760759p.Val318Ala0.436
rpoB760769c.963C>G0.459
rpoB760775c.969G>C0.436
rpoB760776c.970T>A0.436
rpoB760793c.987A>G0.611
rpoB760805c.999G>C0.632
rpoB760817c.1011A>G0.638
rpoB760820c.1014T>C0.638
rpoB760826c.1020C>G0.653
rpoB760830c.1024T>C0.647
rpoB760841c.1035T>C0.647
rpoB760845p.Thr347Pro0.635
rpoB760859c.1053T>C0.694
rpoB760862c.1056G>C0.706
rpoB760869p.Val355Ile0.737
rpoB760886c.1080A>G0.710
rpoB760925c.1119T>C0.683
rpoB760928c.1122G>C0.667
rpoB760931c.1125C>G0.661
rpoB760934c.1128C>T0.652
rpoB760946c.1140A>G0.676
rpoB760982c.1176G>C0.569
rpoB760985c.1179G>C0.563
rpoB760991c.1185G>C0.587
rpoB761006c.1200C>G0.639
rpoB761015c.1209G>C0.603
rpoB761021c.1215G>C0.594
rpoB761027c.1221A>G0.623
rpoB761036c.1230G>C0.618
rpoB761037c.1231T>C0.618
rpoB761057c.1251G>C0.603
rpoB761102c.1296A>G0.704
rpoB761129c.1323G>C0.714
rpoB761132c.1326G>T0.690
rpoB761133c.1327T>C0.699
rpoB761150c.1344A>C0.709
rpoB761153c.1347G>C0.731
rpoB761165c.1359G>C0.738
rpoB761180c.1374A>C0.695
rpoB761189c.1383T>C0.707
rpoB761195c.1389G>C0.728
rpoB761207c.1401C>T0.719
rpoB761213c.1407G>C0.724
rpoB761219c.1413G>C0.714
rpoB761249c.1443A>G0.687
rpoB761255c.1449T>G0.694
rpoB761261c.1455G>T0.688
rpoB761279p.Ile491Met0.347
rpoB761306c.1500C>G0.620
rpoB761327c.1521A>G0.625
rpoB761330c.1524G>C0.634
rpoB761354c.1548C>T0.662
rpoB761360c.1554T>C0.619
rpoB761362p.Ser519Thr0.619
rpoB761373p.Val523His0.638
rpoB761408c.1602G>C0.617
rpoB761414c.1608A>G0.617
rpoB761423c.1617T>C0.590
rpoB761435c.1629T>C0.507
rpoB761438c.1632G>C0.514
rpoB761439p.Asp545Lys0.514
rpoB761444c.1638T>C0.514
rpoB761447c.1641C>G0.522
rpoB761452p.Val549Glu0.529
rpoB761457p.Pro551Ser0.536
rpoB761477c.1671C>G0.667
rpoB761492c.1686G>C0.689
rpoB761510c.1704T>C0.667
rpoB761531c.1725C>G0.625
rpoB761537c.1731C>G0.644
rpoB761570c.1764T>C0.737
rpoB761573c.1767C>G0.718
rpoB761579c.1773G>C0.779
rpoB761588c.1782C>T0.770
rpoB761606c.1800C>G0.783
rpoB761612c.1806G>C0.795
rpoB761615c.1809A>C0.776
rpoB761636c.1830G>T0.807
rpoB761645c.1839C>G0.786
rpoB761648c.1842T>C0.788
rpoB761657c.1851C>G0.764
rpoB761675c.1869G>C0.750
rpoB761720c.1914C>G0.538
rpoB761725p.Glu640Ala0.513
rpoB761732c.1926C>G0.488
rpoB761735c.1929C>G0.477
rpoB761747c.1941G>C0.614
rpoB761750c.1944G>C0.623
rpoB761765c.1959T>C0.632
rpoB761772p.His656Ala0.625
rpoB761778p.Asn658Asp0.644
rpoB761791p.Arg662His0.667
rpoB761813c.2007T>C0.671
rpoB761815p.Ala670Glu0.658
rpoB761834c.2028T>C0.753
rpoB761848p.Cys681Ser0.741
rpoB761852c.2046C>G0.741
rpoB761858c.2052G>C0.761
rpoB761873c.2067A>C0.772
rpoB761885c.2079T>C0.788
rpoB761906c.2100C>G0.747
rpoB761909c.2103T>C0.743
rpoB761912c.2106T>C0.757
rpoB761915p.Asp703Glu0.757
rpoB761916p.Asp704Asn0.757
rpoB761948c.2142G>C0.804
rpoB761954c.2148C>G0.820
rpoB762008c.2202C>T0.738
rpoB762014c.2208C>T0.730
rpoB762017c.2211A>G0.719
rpoB762053c.2247T>C0.613
rpoB762062c.2256T>C0.625
rpoB762065c.2259T>C0.625
rpoB762083c.2277T>C0.574
rpoB762086c.2280G>C0.576
rpoB762101c.2295C>G0.534
rpoB762114p.Ile770Val0.562
rpoB762131c.2325C>G0.563
rpoB762140c.2334G>C0.563
rpoB762143c.2337T>C0.569
rpoB762149c.2343G>C0.608
rpoB762167c.2361T>C0.592
rpoB762176c.2370T>C0.598
rpoB762185c.2379G>C0.634
rpoB762206c.2400C>G0.651
rpoB762233c.2427G>C0.671
rpoB762246c.2440C>T0.677
rpoB762254c.2448T>G0.674
rpoB762257c.2451C>G0.667
rpoB762266c.2460T>C0.685
rpoB762284c.2478G>C0.719
rpoB762293c.2487T>C0.691
rpoB762317c.2511A>G0.720
rpoB762329c.2523G>C0.711
rpoB762338c.2532T>C0.750
rpoB762347c.2541T>C0.750
rpoB762362p.Glu852Asp0.774
rpoB762369c.2563T>C0.774
rpoB762395c.2589G>C0.762
rpoB762398c.2592T>C0.767
rpoB762401c.2595G>C0.754
rpoB762404c.2598T>C0.774
rpoB762410c.2604T>C0.738
rpoB762416c.2610A>G0.723
rpoB762419c.2613C>G0.712
rpoB762434c.2628T>C0.726
rpoB762449c.2643C>A0.747
rpoB762467c.2661C>T0.738
rpoB762488c.2682G>C0.693
rpoB762489p.Val895Gln0.707
rpoB762509c.2703T>G0.608
rpoB762510p.Ala902Pro0.593
rpoB762521c.2715C>T0.610
rpoB762533c.2727T>C0.586
rpoB762536c.2730T>C0.580
rpoB762537c.2731T>C0.580
rpoB762551c.2745C>G0.581
rpoB762581c.2775T>C0.488
rpoB762582c.2776T>C0.465
rpoB762782c.2976T>C0.279
rpoB762785p.Asp993Glu0.279
rpoB762788c.2982G>C0.273
rpoB762789p.Leu995Met0.273
rpoB762794c.2988C>G0.340
rpoB762799p.Ala998Gly0.367
rpoB762810p.Ala1002Ser0.396
rpoB762813p.Met1003Val0.388
rpoB762818c.3012C>G0.388
rpoB762827c.3021G>C0.492
rpoB762857c.3051C>G0.627
rpoB762860c.3054G>C0.627
rpoB762863c.3057T>C0.638
rpoB762929c.3123G>C0.771
rpoB762989c.3183G>C0.746
rpoB762995c.3189G>T0.750
rpoB763013c.3207C>G0.737
rpoB763028c.3222T>C0.699
rpoB763031c.3225T>G0.288
rpoB763034c.3228C>G0.667
rpoB763040c.3234C>G0.671
rpoB763067c.3261C>G0.676
rpoB763070c.3264T>C0.690
rpoB763085c.3279C>G0.691
rpoB763115c.3309T>C0.690
rpoB763136c.3330C>T0.644
rpoB763148c.3342G>C0.629
rpoB763158c.3352C>T0.652
rpoB763166c.3360A>G0.645
rpoB763190c.3384C>T0.635
rpoB763202c.3396A>G0.457
rpoB763205c.3399G>C0.447
rpoB763206c.3400A>T0.447
rpoB763214c.3408T>C0.596
rpoB763226c.3420A>G0.557
rpoB763227c.3421C>T0.557
rpoB763238c.3432T>C0.557
rpoB763253c.3447G>C0.544
rpoB763256c.3450G>A0.544
rpoB763268c.3462C>G0.481
rpoB763283c.3477T>C0.511
rpoB763284c.3478C>T0.511
rpoC763351c.-19T>C0.490
rpoC763352c.-18T>A0.480
rpoC763402c.33C>G0.650
rpoC763411c.42T>G0.689
rpoC763414c.45T>C0.683
rpoC763441c.72C>T0.692
rpoC763444c.75T>C0.704
rpoC763456c.87A>G0.719
rpoC763486c.117T>G0.712
rpoC763492c.123G>C0.706
rpoC763528c.159G>A0.621
rpoC763546c.177A>G0.644
rpoC763570c.201G>C0.615
rpoC763573c.204G>C0.627
rpoC763594c.225C>T0.577
rpoC763603c.234C>T0.581
rpoC763636c.267T>C0.632
rpoC763657c.288G>A0.616
rpoC763660c.291T>G0.616
rpoC763675c.306C>G0.638
rpoC763696c.327T>C0.682
rpoC763702c.333C>G0.703
rpoC763717c.348T>C0.710
rpoC763723c.354G>C0.707
rpoC763732c.363C>G0.721
rpoC763741c.372C>T0.733
rpoC763744c.375G>C0.766
rpoC763765c.396T>C0.697
rpoC763774c.405G>C0.689
rpoC763807c.438T>C0.738
rpoC763816c.447C>G0.716
rpoC763835p.Ala156Met0.714
rpoC763853p.Val162Ile0.713
rpoC763858c.489A>G0.728
rpoC763872p.Gly168Ala0.684
rpoC763876p.Glu169Asp0.680
rpoC763879c.510A>G0.693
rpoC763888c.519G>C0.667
rpoC763891c.522G>C0.652
rpoC763894c.525A>G0.646
rpoC763900c.531G>C0.676
rpoC763945c.576T>C0.696
rpoC763951c.582G>C0.657
rpoC763960c.591T>C0.662
rpoC763987c.618C>T0.591
rpoC763991p.Ile208Leu0.569
rpoC763996c.627T>C0.561
rpoC764002c.633C>G0.582
rpoC764005c.636G>C0.594
rpoC764024c.655T>C0.613
rpoC764032p.Asp221Glu0.618
rpoC764040p.Ser224Thr0.575
rpoC764044c.675T>C0.587
rpoC764059c.690G>T0.640
rpoC764083c.714A>G0.692
rpoC764098c.729A>G0.699
rpoC764101c.732C>G0.690
rpoC764102p.Val245Ile0.690
rpoC764112p.Tyr248Phe0.705
rpoC764116c.747C>T0.718
rpoC764131c.762T>C0.716
rpoC764188c.819A>G0.712
rpoC764195p.Ser276Ile0.596
rpoC764203c.834G>C0.597
rpoC764206c.837T>C0.607
rpoC764215c.846A>G0.667
rpoC764236c.867G>A0.658
rpoC764248c.879C>G0.692
rpoC764257c.888G>C0.646
rpoC764266c.897T>C0.631
rpoC764269c.900G>C0.627
rpoC764272c.903G>C0.614
rpoC764278c.909A>G0.646
rpoC764338c.969G>A0.620
rpoC764353c.984G>C0.643
rpoC764365c.996C>T0.667
rpoC764380c.1011G>C0.596
rpoC764381c.1012T>A0.589
rpoC764387c.1018T>C0.589
rpoC764392c.1023C>T0.614
rpoC764405c.1036A>C0.710
rpoC764419c.1050C>G0.704
rpoC764428c.1059G>C0.681
rpoC764431c.1062G>C0.694
rpoC764434c.1065A>G0.690
rpoC764446c.1077T>C0.708
rpoC764449c.1080G>C0.704
rpoC764452c.1083T>C0.714
rpoC764458c.1089G>C0.722
rpoC764461c.1092A>G0.736
rpoC764489c.1120C>T0.760
rpoC764497c.1128A>G0.786
rpoC764510c.1141C>T0.742
rpoC764521c.1152T>C0.750
rpoC764527c.1158C>T0.764
rpoC764536c.1167G>C0.691
rpoC764539c.1170C>G0.685
rpoC764548c.1179G>A0.600
rpoC764551c.1182G>C0.582
rpoC764554c.1185C>T0.627
rpoC764560c.1191T>C0.639
rpoC764566c.1197C>G0.667
rpoC764575c.1206T>G0.609
rpoC764593c.1224C>T0.567
rpoC764611c.1242G>T0.574
rpoC764650c.1281G>C0.566
rpoC764651c.1282T>A0.573
rpoC764752c.1383G>C0.791
rpoC764764c.1395T>C0.778
rpoC764809c.1440C>T0.768
rpoC764815c.1446A>G0.743
rpoC764827c.1458G>C0.761
rpoC764858c.1489T>C0.746
rpoC764872c.1503A>G0.750
rpoC764888c.1519T>C0.734
rpoC764911c.1542A>G0.712
rpoC764932c.1563C>A0.651
rpoC764948c.1579T>C0.672
rpoC764968c.1599T>C0.714
rpoC764995c.1626C>G0.750
rpoC765007c.1638T>G0.696
rpoC765008c.1639T>C0.696
rpoC765011c.1642A>T0.696
rpoC765019c.1650A>G0.699
rpoC765034c.1665T>C0.671
rpoC765040c.1671T>C0.662
rpoC765041c.1672T>C0.658
rpoC765047c.1678T>C0.659
rpoC765055c.1686C>G0.614
rpoC765073c.1704G>C0.602
rpoC765076c.1707A>G0.617
rpoC765079c.1710T>G0.617
rpoC765082c.1713G>C0.630
rpoC765089c.1720T>C0.678
rpoC765103c.1734G>T0.659
rpoC765208c.1839T>C0.143
rpoC765220c.1851A>G0.182
rpoC765233p.Ala622Ser0.171
rpoC765241c.1872C>T0.167
rpoC765244c.1875T>C0.167
rpoC765247c.1878C>G0.167
rpoC765248c.1879T>C0.167
rpoC765251c.1882A>T0.162
rpoC765292c.1923G>C0.618
rpoC765298c.1929G>C0.595
rpoC765300p.Val644Ala0.595
rpoC765319c.1950A>G0.648
rpoC765326p.His653Ala0.648
rpoC765330p.Ser654Asn0.644
rpoC765346c.1977C>G0.667
rpoC765349c.1980T>C0.667
rpoC765352c.1983G>C0.670
rpoC765364c.1995G>A0.696
rpoC765383p.Met672Leu0.714
rpoC765404p.Leu679Val0.697
rpoC765409c.2040T>C0.705
rpoC765421c.2052C>G0.662
rpoC765478c.2109T>C0.662
rpoC765499c.2130C>G0.667
rpoC765529c.2160C>T0.693
rpoC765541c.2172C>G0.708
rpoC765553c.2184C>T0.684
rpoC765556c.2187G>C0.671
rpoC765559c.2190G>C0.667
rpoC765580c.2211G>C0.684
rpoC765613p.His748Gln0.632
rpoC765625c.2256C>G0.641
rpoC765628c.2259G>C0.645
rpoC765631p.Asp754Glu0.667
rpoC765700c.2331T>C0.657
rpoC765734c.2365T>C0.676
rpoC765739c.2370G>T0.686
rpoC765751c.2382C>G0.646
rpoC765753p.Asp795Ala0.662
rpoC765772c.2403C>G0.703
rpoC765784c.2415C>G0.672
rpoC765787c.2418C>T0.667
rpoC765793c.2424C>G0.698
rpoC765796c.2427C>T0.722
rpoC765811c.2442T>C0.712
rpoC765814c.2445A>G0.712
rpoC765826c.2457T>C0.712
rpoC765835c.2466C>T0.737
rpoC765850c.2481G>C0.722
rpoC765883c.2514C>G0.696
rpoC765886c.2517C>G0.692
rpoC765892c.2523T>C0.711
rpoC765937c.2568T>C0.686
rpoC765947c.2578T>C0.657
rpoC765967c.2598C>T0.606
rpoC765982c.2613C>G0.540
rpoC765994c.2625A>T0.516
rpoC766010c.2641T>A0.508
rpoC766021c.2652G>C0.562
rpoC766027c.2658G>C0.554
rpoC766043p.Gln892Glu0.543
rpoC766054c.2685C>G0.526
rpoC766082p.Ala905Gln0.479
rpoC766096c.2727G>C0.561
rpoC766129c.2760C>G0.573
rpoC766135c.2766G>A0.558
rpoC766141c.2772C>T0.566
rpoC766142c.2773C>T0.566
rpoC766174p.Asn935Lys0.450
rpoC766178p.Ile937Val0.429
rpoC766312c.2943T>G0.192
rpoC766327c.2958C>A0.469
rpoC766345c.2976T>C0.605
rpoC766348c.2979A>G0.619
rpoC766357c.2988C>T0.648
rpoC766363c.2994G>C0.648
rpoC766366c.2997C>G0.661
rpoC766381c.3012C>T0.683
rpoC766384c.3015A>G0.692
rpoC766390c.3021C>T0.706
rpoC766393c.3024C>G0.716
rpoC766408c.3039C>G0.770
rpoC766411c.3042C>G0.781
rpoC766426c.3057C>T0.759
rpoC766447c.3078T>C0.785
rpoC766462c.3093G>C0.780
rpoC766483c.3114G>C0.696
rpoC766484p.Val1039Ile0.696
rpoC766492c.3123T>C0.701
rpoC766522c.3153C>G0.670
rpoC766528c.3159T>C0.667
rpoC766531c.3162G>C0.647
rpoC766540p.Asp1057Glu0.647
rpoC766549c.3180G>C0.652
rpoC766573c.3204T>C0.679
rpoC766582c.3213C>G0.619
rpoC766583p.Gly1072Ser0.619
rpoC766591c.3222A>G0.600
rpoC766594c.3225G>C0.609
rpoC766597c.3228C>G0.600
rpoC766607p.Ile1080Leu0.645
rpoC766630c.3261G>C0.643
rpoC766657c.3288A>G0.731
rpoC766672c.3303T>C0.714
rpoC766673p.Gly1102Asn0.705
rpoC766726c.3357T>C0.686
rpoC766738c.3369G>C0.710
rpoC766765c.3396A>C0.693
rpoC766774c.3405T>C0.692
rpoC766801c.3432C>G0.667
rpoC766804c.3435A>G0.653
rpoC766861c.3492G>C0.691
rpoC766864c.3495G>C0.707
rpoC766900c.3531T>C0.746
rpoC766933c.3564A>G0.792
rpoC766945c.3576A>G0.789
rpoC766963c.3594T>C0.810
rpoC766972c.3603G>C0.759
rpoC766996c.3627C>T0.744
rpoC767009c.3640T>A0.727
rpoC767014c.3645G>C0.720
rpoC767033c.3664T>A0.691
rpoC767059c.3690T>G0.711
rpoC767062c.3693C>A0.707
rpoC767098c.3729T>C0.736
rpoC767119c.3750A>G0.726
rpoC767134c.3765C>A0.725
rpoC767158c.3789T>C0.716
rpoC767180p.Ala1271Gln0.701
rpoC767191c.3822C>G0.723
rpoC767206c.3837C>G0.685
rpoC767209c.3840T>C0.658
rpoC767212c.3843G>C0.649
rpoC767221c.3852C>G0.635
rpoC767230c.3861G>C0.622
rpoC767233c.3864T>C0.597
rpoC767263c.3894T>C0.357
rpoC767264p.Ala1299Gln0.349
rpoC767275c.3906T>C0.312
rpoC767278c.3909T>C0.326
rpoC767281c.3912C>G0.326
rpoC767284c.3915C>T0.319
rpoC767288c.3919C>T0.333
rpsL781395c.-165T>C1.000
rpsL781571c.12C>T0.458
rpsL781595c.36T>C0.517
rpsL781605p.Ile16Val0.517
rpsL781608p.Ser17Ala0.517
rpsL781628c.69T>C0.652
rpsL781631c.72G>C0.662
rpsL781649c.90T>C0.697
rpsL781655c.96T>C0.699
rpsL781682c.123T>C0.709
rpsL781700c.141G>C0.648
rpsL781703c.144G>T0.644
rpsL781715c.156T>C0.618
rpsL781728c.169T>C0.635
rpsL781736c.177T>C0.624
rpsL781742c.183C>T0.632
rpsL781748c.189C>G0.612
rpsL781754c.195G>C0.611
rpsL781760c.201T>C0.604
rpsL781772c.213C>A0.590
rpsL781808c.249C>T0.553
rpsL781811c.252C>T0.553
rpsL781832c.273T>C0.544
rpsL781838c.279G>C0.541
rpsL781841c.282C>G0.575
rpsL781865c.306G>C0.580
rpsL781868c.309T>C0.580
rpsL781871c.312G>C0.586
rpsL781877c.318T>C0.611
rpsL781892c.333A>G0.634
rpsL781898c.339A>T0.639
rpsL781916c.357T>C0.634
rpsL781929p.Gly124Ser0.678
rplC800794c.-15A>G0.672
rplC800796c.-13A>G0.667
rplC800814c.6A>G0.672
rplC800817c.9A>T0.671
rplC800844c.36T>C0.696
rplC800865c.57A>G0.661
rplC800867p.Ser20Asn0.648
rplC800874c.66A>G0.648
rplC800875p.Val23Ile0.648
rplC800880c.72A>G0.660
rplC800889c.81C>G0.673
rplC800892c.84G>C0.686
rplC800907c.99C>G0.680
rplC800916c.108A>G0.660
rplC800934c.126C>G0.536
rplC800937c.129A>G0.556
rplC800939p.Arg44Gln0.556
rplC800946c.138T>C0.500
rplC800949c.141T>C0.500
rplC800967c.159C>G0.393
rplC800970c.162T>C0.370
rplC801117c.309G>C0.150
rplC801127p.Ala107Thr0.414
rplC801132c.324T>C0.438
rplC801147c.339T>C0.485
rplC801150c.342G>C0.471
rplC801153c.345G>C0.486
rplC801156c.348T>A0.472
rplC801168c.360C>G0.512
rplC801171c.363A>G0.500
rplC801174c.366T>C0.488
rplC801195c.387G>C0.531
rplC801207c.399C>T0.554
rplC801246c.438C>T0.483
rplC801249c.441T>C0.492
rplC801255c.447C>T0.491
rplC801264c.456C>T0.412
rplC801267c.459A>T0.380
rplC801270c.462T>C0.365
rplC801276c.468G>C0.358
rplC801279c.471G>C0.358
rplC801282c.474G>C0.365
rplC801285c.477G>C0.377
rplC801300c.492C>G0.548
rplC801309c.501C>G0.525
rplC801312c.504G>C0.541
rplC801321c.513C>T0.550
rplC801324c.516T>C0.581
rplC801339c.531T>C0.607
rplC801341p.Leu178Gln0.559
rplC801348c.540T>G0.562
rplC801357c.549T>C0.609
rplC801367p.Ala187Thr0.627
rplC801402c.594T>C0.710
rplC801405c.597T>C0.721
rplC801423c.615G>C0.673
rplC801426c.618C>G0.660
rplC801427p.Met207Val0.646
rplC801438c.630T>C0.592
rplC801442p.Ile212Val0.588
rrs1471923r.78t>c0.700
rrs1471925r.80t>c0.692
rrs1471932r.87a>g0.705
rrs1471934r.89a>g0.705
rrs1471969r.124t>c0.714
rrs1471970r.125g>a0.700
rrs1472028r.183a>t0.622
rrs1472029r.184c>t0.611
rrs1472030r.185g>t0.611
rrs1472031r.186g>a0.611
rrs1472033r.188a>g0.647
rrs1472034r.189t>c0.647
rrs1472044r.199g>t0.700
rrs1472045r.200t>a0.707
rrs1472061r.216a>t0.702
rrs1472075r.230a>g0.714
rrs1472108r.263c>t0.725
rrs1472969r.1124a>g0.758
rrs1472970r.1125c>g0.758
rrs1472977r.1132g>c0.783
rrs1472978r.1133t>c0.783
rrs1473105r.1260g>a0.633
rrs1473120r.1275c>ct0.549
rrs1473123r.1278a>t0.609
rrs1473145r.1300c>t0.600
rrs1473166r.1321g>a0.609
rrs1473290r.1445c>t0.672
rrl1473651c.-7GT>G0.440
rrl1473658r.1t>a0.440
rrl1473659r.2t>a0.440
rrl1473668r.11c>t0.544
rrl1473756r.99g>a0.672
rrl1473758r.101g>t0.672
rrl1473806r.149c>t0.712
rrl1473877r.220g>a0.721
rrl1473898r.241c>t0.672
rrl1473943r.286g>t0.717
rrl1473945r.288t>a0.702
rrl1473946r.289a>t0.702
rrl1473986r.329t>c0.674
rrl1473987r.330g>a0.674
rrl1473995r.338g>t0.681
rrl1474001r.344c>t0.714
rrl1474009r.352a>g0.721
rrl1474012r.355c>t0.721
rrl1474093r.436g>t0.673
rrl1474099r.442g>a0.673
rrl1474103r.446a>t0.679
rrl1474140r.483c>t0.672
rrl1474151r.494c>t0.691
rrl1474181r.524c>t0.696
rrl1474249r.592g>t0.640
rrl1474291r.634tttcctctccggagga>t0.625
rrl1474308r.651g>t0.562
rrl1474310r.653t>g0.545
rrl1474356r.699t>c0.743
rrl1474362r.705a>g0.738
rrl1474376r.719t>c0.694
rrl1474427r.770a>c0.514
rrl1474429r.772g>c0.514
rrl1474432r.775c>g0.486
rrl1474639r.982g>a0.685
rrl1474794r.1137c>t0.746
rrl1474812r.1155g>a0.750
rrl1474823r.1166c>t0.730
rrl1474831r.1174a>g0.754
rrl1474904r.1247g>a0.796
rrl1474956r.1299c>t0.639
rrl1474958r.1301a>g0.639
rrl1474960r.1303c>g0.639
rrl1474963r.1306g>t0.657
rrl1474964r.1307t>a0.622
rrl1474965r.1308g>c0.649
rrl1474970r.1313g>a0.649
rrl1475006r.1349a>t0.750
rrl1475061r.1404c>t0.688
rrl1475088r.1431a>t0.689
rrl1475199r.1542g>a0.796
rrl1475206r.1549c>t0.796
rrl1475209r.1552g>c0.816
rrl1475213r.1556c>t0.812
rrl1475249r.1592t>c0.725
rrl1475252r.1595c>t0.720
rrl1475266r.1609t>c0.708
rrl1475267r.1610g>a0.708
rrl1475275r.1618c>t0.702
rrl1475276r.1619t>c0.708
rrl1475291r.1634a>c0.740
rrl1475313r.1656g>a0.771
rrl1475315r.1658a>t0.766
rrl1475355r.1698c>t0.681
rrl1475369r.1712g>t0.667
rrl1475402r.1745c>t0.667
rrl1475419r.1762c>t0.682
rrl1475429r.1772g>a0.674
rrl1475436r.1779c>t0.632
rrl1475483r.1826c>t0.611
rrl1475505r.1848g>a0.697
rrl1475526r.1869c>a0.724
rrl1475599r.1942a>g0.727
rrl1475608r.1951t>c0.714
rrl1475642r.1985t>c0.771
rrl1475657r.2000a>g0.771
rrl1475659r.2002g>t0.760
rrl1475758r.2101ac>a0.745
rrl1475763r.2106c>t0.714
rrl1475765r.2108ag>a0.714
rrl1475881r.2224t>c0.667
rrl1475988r.2331a>g0.697
rrl1476031r.2374c>t0.565
rrl1476032r.2375c>a0.542
rrl1476033r.2376t>c0.542
rrl1476034r.2377c>a0.542
rrl1476045r.2388g>t0.542
rrl1476047r.2390g>t0.542
rrl1476048r.2391g>a0.542
rrl1476049r.2392c>t0.583
rrl1476086r.2429g>a0.732
rrl1476089r.2432t>c0.732
rrl1476095r.2438c>g0.750
rrl1476106r.2449a>t0.735
rrl1476115r.2458t>c0.760
rrl1476117r.2460g>c0.776
rrl1476214r.2557g>a0.756
rrl1476224r.2567a>g0.787
rrl1476281r.2624t>c0.743
rrl1476583r.2926g>a0.694
rrl1476584r.2927c>t0.700
rrl1476594r.2937c>t0.692
rrl1476597r.2940g>a0.692
rrl1476603r.2946g>a0.692
rrl1476608r.2951c>g0.700
rrl1476628r.2971t>a0.660
rrl1476689r.3032a>t0.714
rrl1476690r.3033c>t0.714
rrl1476693r.3036g>a0.667
rrl1476695r.3038t>a0.681
rrl1476716r.3059a>c0.674
rrl1476726r.3069a>g0.667
rrl1476732r.3075t>c0.643
rrl1476750r.3093t>c0.632
rrl1476755r.3098g>a0.632
rrl1476759r.3102t>c0.649
rrl1476770r.3113t>c0.583
rrl1476771r.3114g>a0.559
fabG11673473p.Pro12Ala0.172
fabG11673482p.Ser15Ala0.588
fabG11673487c.48T>C0.608
fabG11673490c.51A>G0.620
fabG11673523c.84G>T0.633
fabG11673535c.96A>G0.644
fabG11673547c.108T>C0.613
fabG11673568c.129C>G0.554
fabG11673574c.135C>G0.518
fabG11673580c.141T>G0.473
fabG11673589c.150A>G0.471
fabG11673595c.156A>C0.152
fabG11673596p.Lys53Glu0.152
fabG11673601c.162G>C0.156
fabG11673602c.163C>T0.156
fabG11673607c.168T>C0.156
fabG11673615p.Glu59Val0.194
fabG11673619c.180T>C0.286
fabG11673633p.Ser65Asn0.368
fabG11673637p.Asp66Glu0.350
fabG11673641p.Val68Ile0.333
fabG11673646c.207T>C0.368
fabG11673657p.Thr73Lys0.366
fabG11673660p.Ala74Glu0.366
fabG11673664c.225A>C0.400
fabG11673667c.228A>G0.400
fabG11673679c.240T>C0.511
fabG11673685c.246C>T0.553
fabG11673710p.Leu91Ile0.667
fabG11673716p.Ala93Lys0.679
fabG11673733p.Met98Ile0.727
fabG11673748c.309A>G0.692
fabG11673749p.Lys104Arg0.692
fabG11673758p.Lys107Glu0.692
fabG11673793c.354G>C0.167
fabG11673890p.Ala151Ser0.625
fabG11673901c.462A>G0.667
fabG11673905p.Ser156Ala0.679
fabG11673916c.477A>C0.702
fabG11673917p.Val160Leu0.702
fabG11673922c.483T>C0.717
fabG11673941p.Ala168Ser0.734
fabG11673946c.507C>G0.746
fabG11673955c.516G>C0.704
fabG11673961c.522A>C0.701
fabG11673985c.546C>G0.688
fabG11674006p.Asp189Glu0.649
fabG11674015c.576C>T0.500
fabG11674018c.579G>C0.510
fabG11674021c.582G>C0.510
fabG11674024c.585T>C0.510
fabG11674033c.594T>C0.500
fabG11674037p.Gln200Ala0.500
fabG11674042c.603G>T0.500
fabG11674049p.Gln204Asp0.480
fabG11674054c.615T>C0.480
fabG11674060c.621A>G0.490
fabG11674063c.624G>C0.490
fabG11674079p.Pro214Ala0.655
fabG11674114c.675T>A0.676
fabG11674123c.684T>C0.656
fabG11674126c.687G>C0.646
fabG11674132c.693T>C0.635
fabG11674136p.Ser233Ala0.633
fabG11674141c.702T>C0.661
fabG11674156c.717C>G0.635
fabG11674171c.732T>C0.564
inhA1674471c.270G>C0.526
inhA1674480c.279T>C0.544
inhA1674486c.285T>C0.559
inhA1674504c.303C>G0.590
inhA1674537c.336C>G0.576
inhA1674542p.Ala114Glu0.567
inhA1674546c.345T>C0.576
inhA1674549c.348G>C0.561
inhA1674552c.351C>G0.571
inhA1674555c.354G>A0.571
inhA1674561c.360C>T0.691
inhA1674582c.381T>C0.743
inhA1674585c.384T>C0.754
inhA1674589p.Met130Leu0.750
inhA1674601p.Leu134Thr0.700
inhA1674624c.423A>C0.702
inhA1674630c.429C>G0.694
inhA1674660c.459G>C0.683
inhA1674672c.471C>G0.680
inhA1674703c.502T>C0.652
inhA1674708c.507G>A0.643
inhA1674718c.517A>C0.643
inhA1674723c.522C>T0.625
inhA1674738c.537C>G0.500
inhA1674741c.540C>T0.478
inhA1674746p.Tyr182Phe0.468
inhA1674750c.549T>C0.455
inhA1674753c.552G>C0.455
inhA1674756c.555T>C0.465
inhA1674759c.558G>C0.489
inhA1674774c.573A>G0.623
inhA1674780c.579T>G0.642
inhA1674789c.588G>C0.630
inhA1674801c.600T>C0.611
inhA1674822c.621C>G0.641
inhA1674828c.627G>A0.646
inhA1674846p.Ile215Met0.677
inhA1674855c.654C>G0.636
inhA1674864c.663C>T0.645
inhA1674870c.669T>C0.645
inhA1674879c.678T>C0.694
inhA1674903c.702T>C0.683
inhA1674904p.Ala235Pro0.662
inhA1674909c.708G>A0.677
inhA1674942c.741T>G0.644
inhA1674960c.759C>G0.604
inhA1674966c.765T>G0.543
inhA1674967p.Asp256Thr0.521
inhA1674987c.786C>T0.489
rpsA1833512c.-30AC>A0.447
rpsA1833518c.-24C>A0.405
rpsA1833532c.-10A>C0.500
rpsA1833554p.Thr5Ala0.527
rpsA1833568c.27G>C0.561
rpsA1833589c.48A>T0.600
rpsA1833595c.54T>C0.607
rpsA1833661c.120A>G0.712
rpsA1833667c.126C>G0.768
rpsA1833721c.180A>G0.623
rpsA1833724c.183C>G0.587
rpsA1833727c.186G>C0.609
rpsA1833742c.201A>G0.639
rpsA1833745c.204G>C0.645
rpsA1833748c.207C>G0.635
rpsA1833787c.246C>G0.622
rpsA1833790c.249T>C0.613
rpsA1833802c.261A>G0.595
rpsA1833811c.270G>T0.592
rpsA1833838c.297G>C0.620
rpsA1833841c.300C>G0.614
rpsA1833847c.306C>G0.658
rpsA1833856c.315A>G0.671
rpsA1833874c.333T>C0.688
rpsA1833928c.387G>C0.603
rpsA1833940c.399C>G0.608
rpsA1833971c.430C>T0.649
rpsA1833979c.438T>C0.662
rpsA1834000c.459G>C0.674
rpsA1834021c.480C>T0.711
rpsA1834030c.489C>G0.743
rpsA1834099c.558C>G0.684
rpsA1834102c.561T>C0.658
rpsA1834105c.564C>G0.649
rpsA1834108c.567C>G0.662
rpsA1834123c.582C>G0.663
rpsA1834150c.609G>C0.532
rpsA1834153c.612T>C0.532
rpsA1834154p.Asn205Gln0.532
rpsA1834157c.616T>C0.532
rpsA1834162c.621A>G0.542
rpsA1834165c.624A>G0.551
rpsA1834169p.Thr210Ala0.571
rpsA1834177c.636A>C1.000
rpsA1834189c.648G>C0.677
rpsA1834195c.654G>C0.662
rpsA1834210c.669C>T0.691
rpsA1834222c.681T>C0.712
rpsA1834231c.690T>C0.725
rpsA1834234c.693G>C0.729
rpsA1834249c.708T>C0.746
rpsA1834261c.720A>G0.754
rpsA1834264c.723G>C0.738
rpsA1834303c.762T>C0.735
rpsA1834306c.765T>C0.735
rpsA1834348c.807T>C0.731
rpsA1834366c.825A>G0.727
rpsA1834375c.834G>A0.707
rpsA1834378c.837T>C0.701
rpsA1834396c.855G>C0.725
rpsA1834411c.870T>C0.704
rpsA1834417c.876G>C0.705
rpsA1834423c.882G>C0.722
rpsA1834435c.894G>C0.696
rpsA1834451c.910T>C0.686
rpsA1834465c.924T>C0.682
rpsA1834468c.927A>G0.679
rpsA1834489c.948T>C0.689
rpsA1834501c.960G>C0.671
rpsA1834510c.969C>T0.684
rpsA1834513c.972C>G0.671
rpsA1834528c.987T>C0.679
rpsA1834540c.999G>C0.671
rpsA1834546c.1005T>C0.637
rpsA1834609c.1068T>C0.671
rpsA1834618c.1077G>C0.683
rpsA1834633c.1092A>G0.667
rpsA1834639c.1098T>C0.700
rpsA1834654p.Glu371Asp0.703
rpsA1834684c.1143C>T0.722
rpsA1834690c.1149T>C0.721
rpsA1834732c.1191T>C0.697
rpsA1834733p.Ala398Ser0.671
rpsA1834738c.1197A>G0.675
rpsA1834753c.1212T>C0.684
rpsA1834765p.Glu408Asp0.688
rpsA1834775p.Ala412Thr0.658
rpsA1834780c.1239A>G0.667
rpsA1834786c.1245A>G0.630
rpsA1834789c.1248T>C0.620
rpsA1834792c.1251G>C0.611
rpsA1834849c.1308C>G0.508
rpsA1834852c.1311C>G0.492
tlyA1917940p.Val1Met0.478
tlyA1917943p.Ala2Ser0.478
tlyA1917951c.12T>C0.613
tlyA1917972c.33A>G1.000
tlyA1917975c.36C>G0.661
tlyA1917981c.42G>C0.661
tlyA1917990c.51G>C0.612
tlyA1917993c.54A>G0.603
tlyA1917996c.57A>G0.603
tlyA1918002c.63A>G0.616
tlyA1918036p.Arg33Ser0.569
tlyA1918048p.Leu37Met0.327
tlyA1918053c.114G>C0.306
tlyA1918057p.Val40Arg0.306
tlyA1918065c.126G>C0.267
tlyA1918067p.Ala43Gly0.273
tlyA1918077c.138G>C0.220
tlyA1918078p.Ser47Ala0.225
tlyA1918082p.Asp48Val0.214
tlyA1918087p.Thr50Ala0.191
tlyA1918092c.153G>C0.191
tlyA1918103p.Val55Ala0.140
tlyA1918111p.Ser58Gly0.136
tlyA1918121p.Ala61Gly0.146
tlyA1918128c.189A>C0.146
tlyA1918137c.198A>C0.171
tlyA1918310p.Asn124Ser0.290
tlyA1918315p.Pro126Ala0.281
tlyA1918323c.384G>C0.243
tlyA1918326c.387G>C0.243
tlyA1918330p.Leu131Val0.243
tlyA1918346p.Ala136Val0.257
tlyA1918352p.Gly138Asp0.237
tlyA1918356c.417C>G0.250
tlyA1918359c.420A>G0.250
tlyA1918362c.423G>C0.263
tlyA1918377c.438T>G0.250
tlyA1918379p.Arg147Pro0.244
tlyA1918389c.450G>C0.370
tlyA1918392c.453A>C0.378
tlyA1918422c.483T>C0.295
tlyA1918425c.486C>A0.279
tlyA1918434c.495C>G0.262
tlyA1918442p.Val168Ala0.222
tlyA1918457p.Arg173His0.200
tlyA1918459p.Asp174Asn0.200
tlyA1918464c.525C>G0.200
tlyA1918476c.537A>C0.216
tlyA1918477p.Leu180Met0.216
tlyA1918488c.549G>A0.235
tlyA1918506c.567A>G0.200
tlyA1918509c.570T>C0.200
katG2154724p.Arg463Leu1.000
katG2155626c.486C>G0.359
katG2155632c.480T>G0.359
katG2155637p.Leu159Ile0.366
katG2155641p.Lys157Asn0.372
katG2155661p.Val151Ile0.472
katG2155677c.435G>C0.483
katG2155680c.432C>G0.508
katG2155691c.421A>G0.508
katG2155695c.417G>C0.508
katG2155704c.408G>C0.516
katG2155716c.396A>C0.485
katG2155722c.390C>G0.485
katG2155728c.384C>G0.478
katG2155742p.Gly124Gln0.386
katG2155743c.369C>G0.386
katG2155782c.330G>C0.298
katG2155785c.327A>G0.304
kasA2518121p.Gln3Lys0.400
kasA2518132c.18C>T0.464
kasA2518138c.24T>C0.492
kasA2518146p.Phe11Tyr0.516
kasA2518162c.48G>A0.597
kasA2518174c.60A>G0.609
kasA2518190p.Ser26Ala0.625
kasA2518199p.Ile29Val0.625
kasA2518220c.106C>T0.606
kasA2518234c.120G>A0.603
kasA2518248p.Ala45Val0.532
kasA2518261p.Glu49Asp0.513
kasA2518263p.Phe50Tyr0.500
kasA2518265p.Val51Ile0.500
kasA2518413p.Ser100Asn0.235
kasA2518421p.Val103Leu0.211
kasA2518429c.315A>C0.286
kasA2518439p.Ala109Ser0.333
kasA2518444c.330T>C0.400
kasA2518447c.333T>G0.400
kasA2518459c.345T>C0.481
kasA2518462c.348A>C0.500
kasA2518468c.354A>C0.533
kasA2518474c.360G>A0.515
kasA2518480c.366T>C0.559
kasA2518483c.369C>G0.541
kasA2518504c.390T>C0.511
kasA2518506p.Ala131Glu0.522
kasA2518519c.405G>C0.593
kasA2518528c.414C>G0.607
kasA2518540c.426T>C0.643
kasA2518561c.447T>C0.642
kasA2518567c.453G>C0.574
kasA2518570c.456G>C0.548
kasA2518574p.Ile154Val0.548
kasA2518579c.465T>C0.531
kasA2518588c.474T>C0.507
kasA2518591c.477G>C0.500
kasA2518609p.Met165Ile0.500
kasA2518624c.510C>G0.493
kasA2518639c.525G>C0.522
kasA2518657c.543G>C0.508
kasA2518672c.558G>C0.500
kasA2518678c.564C>T0.459
kasA2518684c.570C>G0.450
kasA2518696c.582C>G0.435
kasA2518702c.588C>T0.492
kasA2518705c.591T>C0.492
kasA2518711c.597A>G0.507
kasA2518714c.600A>C0.529
kasA2518732c.618C>G0.611
kasA2518744c.630C>T0.653
kasA2518747c.633C>G0.653
kasA2518768c.654C>T0.667
kasA2518777c.663C>T0.676
kasA2518783c.669T>C0.689
kasA2518789c.675G>C0.642
kasA2518792c.678C>A0.636
kasA2518795c.681C>G0.641
kasA2518825c.711T>C0.788
kasA2518864c.750G>C0.750
kasA2518879c.765A>G0.717
kasA2518885c.771T>C0.691
kasA2518898c.784T>C0.636
kasA2518906c.792A>G0.642
kasA2518910p.Leu266Met0.618
kasA2518921c.807T>C0.545
kasA2518936c.822C>G0.481
kasA2518939c.825T>C0.500
kasA2518942c.828T>C0.500
kasA2518951c.837G>C0.469
kasA2518954c.840C>G0.449
kasA2518963c.849T>C0.395
kasA2518969c.855T>G0.333
kasA2518975c.861C>G0.289
kasA2518979c.865A>C0.314
kasA2518990c.876T>G0.172
kasA2519027p.Ile305Val0.148
kasA2519050c.936C>G0.568
kasA2519053c.939G>C0.568
kasA2519056c.942G>C0.587
kasA2519062c.948T>G0.647
kasA2519068c.954C>T0.667
kasA2519072p.Ala320Thr0.667
kasA2519107c.993T>C0.735
kasA2519108p.Asp332Gln0.714
kasA2519122c.1008G>C0.707
kasA2519137c.1023T>G0.718
kasA2519158c.1044C>T0.659
kasA2519167c.1053T>G0.630
kasA2519173c.1059C>G0.617
kasA2519196p.Thr361Ser0.520
kasA2519215c.1101C>T0.370
kasA2519218c.1104G>A0.340
kasA2519221c.1107G>C0.327
kasA2519227c.1113G>C0.314
kasA2519230c.1116C>T0.314
kasA2519236c.1122G>A0.306
kasA2519239c.1125A>C0.306
kasA2519245c.1131T>C0.294
ahpC2726198c.6A>T0.225
ahpC2726204c.12A>G0.311
ahpC2726210c.18T>C0.318
ahpC2726216c.24T>C0.356
ahpC2726219c.27A>G0.378
ahpC2726232p.Gln14Glu0.479
ahpC2726243c.51T>G0.469
ahpC2726244c.52C>T0.469
ahpC2726251p.Gly20Ala0.453
ahpC2726255c.63T>C0.473
ahpC2726258c.66C>T0.491
ahpC2726303c.111T>C0.584
ahpC2726311p.Ser40Asn0.484
ahpC2726315p.Asp41Glu0.484
ahpC2726318p.Glu42Asp0.492
ahpC2726322p.Pro44Ala0.492
ahpC2726330c.138G>A0.526
ahpC2726336c.144G>C0.545
ahpC2726348c.156T>C0.545
ahpC2726357c.165A>G0.556
ahpC2726366c.174G>C0.500
ahpC2726378c.186T>G0.432
ahpC2726387c.195C>T0.324
ahpC2726390c.198G>C0.278
ahpC2726393c.201G>C0.281
ahpC2726397p.Ser69Gly0.300
ahpC2726408c.216T>C0.269
ahpC2726486c.294A>G0.308
ahpC2726493p.Asn101Glu0.357
ahpC2726506p.Thr105Lys0.438
ahpC2726508c.316T>C0.438
ahpC2726528c.336C>G0.577
ahpC2726540c.348C>G0.577
ahpC2726543c.351A>G0.556
ahpC2726546c.354C>G0.500
ahpC2726551p.Gln120Leu0.484
ahpC2726556p.Ala122Thr0.469
ahpC2726564c.372C>G0.614
ahpC2726591c.399C>G0.655
ahpC2726593p.Val134Ala0.655
ahpC2726600c.408T>C0.645
ahpC2726601p.Ile137Leu0.645
ahpC2726638p.Ala149Val0.701
ahpC2726645c.453C>G0.688
ahpC2726657c.465A>C0.696
ahpC2726669p.Asp159Glu0.681
ahpC2726672c.480G>A0.671
ahpC2726675c.483A>G0.671
ahpC2726681c.489A>C0.671
ahpC2726687c.495C>G0.639
ahpC2726693c.501C>G0.620
ahpC2726696c.504C>G0.667
ahpC2726717c.525A>G0.619
ahpC2726747c.555A>C0.517
folC2746365p.Leu412Val0.316
folC2746375c.1224C>G0.350
folC2746390c.1209C>G0.389
folC2746393c.1206G>C0.378
folC2746401p.Ser400Ala0.378
folC2746402c.1197A>G0.378
folC2746416p.Glu395Gln0.368
folC2746420c.1179T>G0.359
folC2746426c.1173C>G0.378
folC2746438c.1161C>G0.359
folC2746451p.Gly383Ala0.400
folC2746471c.1128G>T0.368
folC2746478p.Phe374Tyr0.333
folC2746480c.1119T>G0.343
folC2747021p.Val193Ala0.483
folC2747023c.576G>C0.483
folC2747026c.573G>C0.483
folC2747032c.567T>G0.545
folC2747059c.540A>G0.545
folC2747062c.537T>C0.533
folC2747065c.534G>A0.533
folC2747071c.528G>C0.558
folC2747086c.513T>G0.571
folC2747089c.510C>G0.558
folC2747101c.498C>G0.522
folC2747107c.492C>G0.511
folC2747110c.489A>G0.500
folC2747113c.486G>C0.500
folC2747116c.483C>G0.490
folC2747134c.465G>C0.451
folC2747224c.375C>G0.227
folC2747239c.360A>G0.312
folC2747248c.351C>G0.375
folC2747264p.Gly112Ala0.429
folC2747266c.333G>A0.390
folC2747275c.324A>G0.478
folC2747289p.Pro104Ala0.500
folC2747290c.309T>C0.500
folC2747293c.306C>T0.500
folC2747302c.297T>G0.568
folC2747314c.285T>G0.595
folC2747317c.282G>C0.600
folC2747343p.Val86Ile0.598
folC2747355p.Val82Ile0.610
folC2747359c.240G>C0.613
folC2747362c.237C>G0.613
folC2747394p.Ile69Val0.540
folC2747395c.204A>G0.533
ribD2986959p.Leu41Val0.167
ribD2986978p.Ser47Thr0.333
ribD2986983p.Leu49Val0.306
ribD2986997c.159T>C0.282
ribD2987001p.Val55Ser0.268
ribD2987005p.Asp56Gly0.268
ribD2987011p.Thr58Ser0.262
ribD2987026p.Ala63Gly0.468
ribD2987033c.195C>G0.476
ribD2987042c.204A>G0.485
ribD2987046p.Val70Ile0.493
ribD2987058c.220T>C0.500
ribD2987066c.228A>G0.515
ribD2987069c.231T>C0.523
ribD2987092p.Val85Ala0.515
ribD2987105c.267C>G0.443
ribD2987108c.270T>C0.435
ribD2987123c.285C>G0.312
ribD2987125p.Val96Ala0.283
ribD2987128p.Arg97Gln0.283
ribD2987130p.Met98Leu0.283
ribD2987135c.297T>C0.302
ribD2987137p.Val100Ala0.302
ribD2987140p.Val101Ala0.302
ribD2987165c.327A>C0.286
ribD2987168c.330C>G0.286
thyX3067223c.723C>G0.605
thyX3067232c.714G>C0.610
thyX3067246p.Thr234Ala0.608
thyX3067249p.Thr233Ser0.600
thyX3067252p.Val232Ile0.600
thyX3067274c.672G>C0.573
thyX3067277c.669G>C0.570
thyX3067281p.Val222Ala0.570
thyX3067284p.Ala221Gly0.570
thyX3067286c.660G>C0.576
thyX3067289c.657G>C0.583
thyX3067292c.654C>T0.581
thyX3067295c.651G>A0.580
thyX3067313c.633C>A0.648
thyX3067316c.630T>C0.653
thyX3067325c.621T>C0.618
thyX3067349c.597C>G0.636
thyX3067355c.591T>G0.630
thyX3067367c.579C>G0.631
thyX3067373c.573G>C0.641
thyX3067391c.555C>G0.652
thyX3067394c.552C>G0.645
thyX3067439c.507T>C0.580
thyX3067442c.504G>A0.578
thyX3067445c.501G>C0.565
thyX3067457c.489G>C0.532
thyX3067462c.484G>A0.521
thyX3067465p.Ile161Val0.521
thyX3067466c.480C>G0.521
thyX3067475c.471T>C0.595
thyX3067490c.456G>C0.614
thyX3067493c.453T>C0.594
thyX3067510c.436G>A0.551
thyX3067515p.Ser144Thr0.537
thyX3067531p.Ala139Ser0.549
thyX3067545p.Glu134Ala0.611
thyX3067549p.Thr133Ala0.616
thyX3067556p.His130Gln0.618
thyX3067559c.387G>C0.609
thyX3067565p.Asp127Glu0.620
thyX3067570p.Ala126Pro0.632
thyX3067577c.369C>T0.647
thyX3067602p.Arg115His0.742
thyX3067611p.Lys112Thr0.754
thyX3067619c.327T>G0.754
thyX3067631c.315G>C0.708
thyX3067634c.312G>C0.704
thyX3067652c.294A>G0.682
thyX3067661c.285G>C0.657
thyX3067685c.261T>G0.550
thyX3067693p.Ile85Leu0.492
thyX3067694c.252C>G0.492
thyX3067718c.228G>C0.534
thyX3067721c.225A>G0.569
thyX3067727c.219T>G0.597
thyX3067736c.210G>A0.612
thyX3067762p.Arg62Lys0.561
thyX3067765p.Leu61Ile0.569
thyX3067772c.174G>C0.569
thyX3067775c.171G>A0.596
thyX3067781c.165G>C0.623
thyX3067793c.153A>G0.690
thyX3067799c.147C>T0.658
thyX3067802c.144G>C0.662
thyX3067814c.132A>G0.704
thyX3067850c.96T>G0.750
thyX3067869p.Thr26Ser0.686
thyX3067874c.72G>C0.647
thyX3067877c.69C>G0.642
thyX3067883c.63G>C0.631
thyX3067886c.60T>G0.658
thyX3067889c.57G>C0.658
thyX3067898p.Asp16Glu0.692
thyX3067935p.Thr4Ile0.603
thyA3073791c.681A>G0.227
thyA3073794c.678T>G0.261
thyA3073812c.660G>C0.579
thyA3073815c.657C>T0.600
thyA3073824c.648T>C0.643
thyA3073827c.645T>C0.651
thyA3073839c.633A>G0.653
thyA3073860c.612G>C0.667
thyA3073863c.609A>G0.640
thyA3073866c.606G>C0.627
thyA3073874p.Ile200Val0.604
thyA3073892c.580C>T0.604
thyA3073898p.Ala192Ser0.627
thyA3073917c.555G>C0.604
thyA3073920c.552G>C0.604
thyA3073925c.547A>G0.600
thyA3073929c.543A>G0.568
thyA3073941c.531G>A0.462
thyA3073953c.519A>G0.364
thyA3073956c.516C>G0.300
thyA3073959c.513A>G0.300
thyA3073977c.495T>C0.188
thyA3073983c.489G>A0.194
thyA3073989c.483A>G0.273
thyA3074004c.468A>G0.400
thyA3074010c.462G>C0.444
thyA3074028c.444C>G0.583
thyA3074031c.441A>G0.592
thyA3074037c.435G>C0.612
thyA3074053p.Arg140Gln0.588
thyA3074057p.Glu139Pro0.600
thyA3074061c.411T>C0.600
thyA3074079c.393C>G0.613
thyA3074097c.375G>C0.625
thyA3074102p.Asp124Asn0.606
thyA3074106c.366A>G0.586
thyA3074127c.345C>G0.597
thyA3074130c.342C>G0.595
thyA3074147p.Ile109Val0.578
thyA3074153p.Glu107Gln0.413
thyA3074159p.Ser105Thr0.375
thyA3074160c.312T>C0.366
thyA3074165p.Ala103Thr0.422
thyA3074172c.300C>G0.438
thyA3074175c.297T>C0.438
thyA3074181c.291T>C0.571
thyA3074187c.285A>G0.583
thyA3074205p.Glu89Asp0.621
thyA3074214c.258A>G0.623
thyA3074244c.228T>C0.618
thyA3074263p.Gly70Ala0.531
thyA3074267p.Ile69Val0.565
thyA3074268c.204A>G0.591
thyA3074285c.187A>G0.532
thyA3074286c.186A>G0.532
thyA3074297c.175G>A0.207
thyA3074301c.171G>A0.143
thyA3074305p.Ala56Val0.148
thyA3074307c.165T>C0.148
thyA3074313c.159T>C0.148
thyA3074318p.Phe52Leu0.138
thyA3074319c.153A>G0.138
thyA3074322c.150G>C0.133
thyA3074325c.147T>C0.182
thyA3074328c.144C>T0.235
thyA3074334c.138A>G0.536
thyA3074360c.112A>G0.500
thyA3074361c.111A>G0.492
thyA3074372p.Met34Leu0.517
thyA3074377p.Gln32Arg0.525
thyA3074391c.81G>T0.569
thyA3074397c.75T>C0.563
thyA3074423p.Pro17Ala0.404
thyA3074427c.45A>T0.395
thyA3074432p.Thr14Glu0.395
thyA3074433p.Glu13Asp0.405
thyA3074444p.Phe10Leu0.395
thyA3074445c.27G>T0.395
thyA3074448c.24C>G0.386
thyA3074463c.9T>G0.378
thyA3074471p.Val1Pro0.395
ald3086788c.-32T>C1.000
ald3087641c.822T>C0.200
ald3087647c.828A>G0.207
ald3087649p.Gly277Asp0.207
ald3087653c.834A>G0.214
ald3087656c.837A>G0.241
ald3087665c.846C>G0.276
ald3087666p.Tyr283His0.276
ald3087672p.His285Asp0.450
ald3087680c.861G>C0.523
ald3087704c.885T>C0.469
ald3087716c.897G>C0.489
ald3087726p.Ala303Ser0.479
ald3087729p.Ser304Ala0.479
ald3087737c.918G>C0.479
ald3087749c.930C>G0.425
ald3087750p.Tyr311Val0.425
ald3087761c.942C>G0.447
ald3087770c.951G>C0.459
ald3087787p.Glu323Ala0.457
ald3087791c.972T>C0.432
ald3087797p.Asp326Glu0.333
ald3087799p.His327Arg0.333
ald3087809c.990G>T0.282
ald3087821c.1002G>A0.143
fbiA3640291c.-252T>C0.500
fbiA3640307c.-236C>A0.488
fbiA3640347c.-196A>G0.596
fbiA3640349c.-194A>G0.596
fbiA3640350c.-193C>T0.596
fbiA3640365c.-178C>G0.607
fbiA3640816c.274C>T0.154
fbiA3640820p.Val93Ala0.250
fbiA3640827c.285T>C0.308
fbiA3640830c.288C>G0.333
fbiA3640839c.297C>G0.296
fbiA3640850p.Glu103Gly0.296
fbiA3640857c.315G>C0.308
fbiA3640866c.324T>C0.296
fbiA3640871p.Ala110Gly0.276
fbiA3640878c.336T>C0.286
fbiA3640899c.357G>C0.267
fbiA3640900p.Gln120Asn0.267
fbiA3640914c.372C>G0.267
fbiA3640930p.Glu130Thr0.276
fbiA3640935c.393C>G0.308
fbiA3640938c.396A>G0.320
fbiA3640944c.402T>C0.333
alr3840926c.495A>G0.182
alr3840932c.489G>A0.231
alr3840944c.477A>G0.296
alr3840947c.474C>G0.304
alr3840959c.462C>G0.393
alr3840968c.453C>G0.422
alr3840980c.441C>G0.420
alr3840989c.432C>G0.439
alr3840994p.His143Asp0.439
alr3840997c.424C>G0.446
alr3841001c.420T>C0.456
alr3841010c.411T>C0.485
alr3841018p.Leu135Glu0.500
alr3841022c.399G>C0.500
alr3841028c.393C>G0.514
alr3841033p.Val130Ile0.507
alr3841037c.384C>G0.506
alr3841069p.Ile118Phe0.551
alr3841076c.345C>T0.459
alr3841079c.342A>G0.465
alr3841100c.321T>C0.314
alr3841105p.Thr106Arg0.300
alr3841108p.Ile105Val0.294
alr3841112c.309A>G0.294
alr3841115c.306A>G0.288
alr3841127c.294T>C0.288
alr3841133c.288C>T0.300
alr3841652c.-232A>T0.220
alr3841654c.-234A>C0.238
alr3841662c.-242A>G0.293
alr3841663c.-243G>A0.293
panD4044057c.225G>T0.350
panD4044072c.210G>C0.471
panD4044075c.207A>G0.500
panD4044081c.201A>G0.481
panD4044084c.198A>G0.481
panD4044105c.177C>G0.571
panD4044117c.165C>G0.552
panD4044120c.162T>G0.561
panD4044123c.159A>G0.552
panD4044126c.156A>G0.552
panD4044138c.144A>G0.525
panD4044150c.132T>C0.516
panD4044165c.117C>G0.508
panD4044174c.108G>C0.473
panD4044177c.105G>C0.473
panD4044188c.94A>G0.417
panD4044189c.93G>A0.404
panD4044195c.87A>G0.396
panD4044213c.69G>C0.297
embC4240078c.216A>G0.208
embC4240081c.219G>C0.208
embC4240087c.225T>C0.222
embC4240090c.228C>T0.222
embC4240105c.243C>T0.222
embC4240123c.261C>G0.261
embC4240126c.264C>T0.240
embC4240141c.279A>G0.231
embC4240145p.Ala95Thr0.231
embC4240154p.Gln98Gly0.231
embC4240160p.Thr100Ala0.231
embC4240178c.316T>C0.241
embC4240183c.321A>G0.259
embC4240204c.342T>C0.259
embC4240216c.354T>C0.150
embC4240444c.582C>G0.244
embC4240459c.597G>C0.234
embC4240462c.600G>C0.239
embC4240471c.609C>T0.239
embC4240474c.612G>C0.239
embC4240475p.Ala205Ser0.239
embC4240484p.Ala208Thr0.268
embC4240489c.627A>G0.268
embC4240492c.630G>C0.289
embC4240495c.633T>G0.275
embC4240505p.Ser215Ala0.282
embC4240512p.Ser217Thr0.289
embC4240516c.654G>C0.275
embC4240519c.657T>C0.275
embC4240543c.681G>C0.289
embC4240558c.696C>G0.263
embC4240561c.699C>G0.270
embC4240630c.768C>A0.256
embC4240632p.Met257Thr0.256
embC4240642c.780G>C0.302
embC4240645c.783G>C0.317
embC4240654c.792C>G0.426
embC4240660c.798C>G0.447
embC4240669c.807G>C0.420
embC4240671p.Thr270Ile0.429
embC4240677p.Gly272Ala0.382
embC4240685p.Thr275Ala0.460
embC4240693c.831T>G0.493
embC4240699c.837C>G0.507
embC4240726c.864G>C0.605
embC4240780c.918T>C0.578
embC4240783c.921G>C0.566
embC4240789c.927T>C0.573
embC4240819c.957A>G0.597
embC4240828c.966G>A0.597
embC4240831c.969T>G0.609
embC4240867c.1005T>C0.357
embC4240870c.1008T>C0.350
embC4240873c.1011C>G0.325
embC4240879c.1017G>C0.317
embC4240880p.Ala340Thr0.325
embC4240885c.1023T>C0.317
embC4240897c.1035C>G0.351
embC4240898c.1036C>T0.351
embC4240903c.1041C>G0.351
embC4240911p.Ala350Val0.342
embC4240921c.1059C>G0.308
embC4240924c.1062C>G0.289
embC4240936c.1074A>G0.314
embC4240945c.1083T>G0.200
embC4240954p.Ile364Met0.135
embC4240996c.1134G>C0.341
embC4241002c.1140G>C0.378
embC4241013p.Met384Thr0.451
embC4241017c.1155T>C0.481
embC4241023c.1161T>G0.519
embC4241032c.1170G>C0.552
embC4241038c.1176G>C0.556
embC4241047c.1185C>G0.547
embC4241050c.1188T>G0.552
embC4241053c.1191G>C0.561
embC4241089c.1227C>G0.663
embC4241095c.1233C>T0.693
embC4241107c.1245G>C0.708
embC4241140c.1278A>G0.628
embC4241146c.1284C>G0.627
embC4241158c.1296T>C0.551
embC4241161c.1299C>G0.537
embC4241162c.1300T>C0.537
embC4241170c.1308G>C0.522
embC4241173c.1311C>T0.530
embC4241179c.1317G>A0.522
embC4241203c.1341T>C0.458
embC4241206c.1344G>C0.444
embC4241218c.1356G>C0.371
embC4241230c.1368A>G0.323
embC4241233c.1371G>C0.300
embC4241351p.Ile497Val0.476
embC4241361p.Asn500Thr0.500
embC4241363p.Leu501Met0.511
embC4241374c.1512T>G0.582
embC4241380c.1518A>C0.582
embC4241383c.1521G>C0.589
embC4241394p.Lys511Ser0.633
embC4241449c.1587C>G0.679
embC4241453p.Ile531Val0.667
embC4241479c.1617C>G0.618
embC4241480c.1618T>C0.618
embC4241488c.1626G>C0.618
embC4241496p.Ala545Gly0.576
embC4241500c.1638A>C0.561
embC4241501p.Ser547Thr0.561
embC4241506c.1644G>C0.552
embC4241518c.1656A>G0.549
embC4241521c.1659T>C0.521
embC4241530c.1668C>G0.489
embC4241536c.1674A>G0.405
embC4241539c.1677T>C0.342
embC4241545c.1683T>C0.342
embC4241548c.1686T>C0.316
embC4241551c.1689A>G0.325
embC4241567p.Ile569Val0.455
embC4241572c.1710C>G0.405
embC4241578c.1716G>C0.395
embC4241584c.1722T>C0.351
embC4241587c.1725C>G0.351
embC4241591p.Leu577Val0.371
embC4241611c.1749G>C0.406
embC4241614c.1752A>C0.406
embC4241626c.1764T>C0.406
embC4241635c.1773G>C0.419
embC4241644c.1782G>C0.433
embC4241648c.1786T>C0.433
embC4241657p.Ser599Pro0.419
embC4241665c.1803G>C0.419
embC4241671c.1809T>C0.406
embC4242643c.2781C>T1.000
embC4242689p.Val943Ile0.511
embC4242710p.Gln950Glu0.547
embC4242715c.2853T>C0.564
embC4242742c.2880C>G0.612
embC4242748c.2886A>G0.612
embC4242754c.2892G>C0.631
embC4242764p.Val968Leu0.621
embC4242772c.2910G>C0.600
embC4242779p.Asn973Asp0.589
embC4242791p.Ala977Ser0.492
embC4242796c.2934G>C0.508
embC4242799c.2937T>C0.517
embC4242802c.2940G>C0.508
embC4242820c.2958G>C0.635
embC4242823c.2961G>C0.625
embC4242832c.2970A>C0.644
embC4242838c.2976C>G0.604
embC4242841c.2979C>T0.588
embC4242844c.2982A>G0.600
embC4242847c.2985C>A0.596
embC4242859c.2997C>T0.553
embC4242862c.3000A>G0.543
embC4242863p.Tyr1001Asn0.543
embC4242883c.3021C>G0.532
embC4242892c.3030G>C0.532
embC4242901c.3039G>C0.532
embC4242919c.3057A>G0.545
embC4242928c.3066A>G0.553
embC4242931c.3069G>C0.541
embC4242940c.3078T>C0.484
embC4242941p.His1027Asn0.484
embC4242946c.3084T>C0.469
embC4242952c.3090T>C0.500
embC4242959c.3097C>T0.333
embC4242965p.Ile1035Val0.333
embA4243460c.228C>T1.000
embA4244447c.1215G>C0.189
embA4244462c.1230A>G0.293
embA4244478p.Thr416Leu0.302
embA4244483c.1251T>G0.333
embA4244485p.Thr418Ser0.350
embA4244498c.1266A>G0.500
embA4244507c.1275G>T0.500
embA4244508c.1276T>C0.500
embA4244516c.1284G>C0.519
embA4244517p.Leu429Val0.519
embA4244523p.Pro431Ala0.562
embA4244534c.1302T>C0.578
embA4244537c.1305T>G0.585
embA4244543c.1311C>G0.583
embA4244547p.Ile439Val0.584
embA4244557p.Arg442Thr0.590
embA4244582c.1350T>C0.608
embA4244585c.1353A>G0.603
embA4244611p.Ala460Gly0.404
embA4244616p.Ala462Ser0.396
embA4244619c.1387T>C0.389
embA4244625p.Leu465Val0.382
embA4244631p.Thr467Leu0.375
embA4244645c.1413T>C0.322
embA4244648c.1416G>C0.286
embA4244649p.Asp473Ser0.296
embA4245041c.1809C>G0.483
embA4245044c.1812G>C0.483
embA4245053c.1821G>C0.529
embA4245060c.1828T>C0.556
embA4245083c.1851A>C0.608
embA4245089c.1857G>C0.627
embA4245101c.1869G>C0.690
embA4245137c.1905T>C0.733
embA4245146c.1914G>A0.733
embA4245149c.1917C>G0.736
embA4245153p.Ile641Val0.744
embA4245182c.1950T>C0.701
embA4245189c.1957C>T0.709
embA4245198p.Leu656Ile0.728
embA4245207c.1975T>C0.703
embA4245215c.1983A>C0.685
embA4245222p.Tyr664Gln0.690
embA4245248c.2016G>C0.627
embA4245257c.2025A>G0.593
embA4245263c.2031A>G0.627
embA4245282p.Ile684Val0.333
embA4245285c.2053T>C0.323
embA4245290c.2058C>G0.310
embA4245293c.2061T>G0.320
embA4245296c.2064G>C0.320
embA4245299c.2067A>G0.320
embA4245659c.2427C>G0.383
embA4245674c.2442A>C0.423
embA4245677c.2445G>C0.436
embA4245693p.Ile821Val0.492
embA4245701c.2469G>C0.540
embA4245704c.2472G>C0.547
embA4245725c.2493A>G0.583
embA4245726c.2494T>C0.583
embA4245737c.2505A>C0.605
embA4245740c.2508T>C0.613
embA4245764c.2532G>C0.634
embA4245772p.Asn847Thr0.609
embA4245785c.2553G>C0.598
embA4245807c.2575T>C0.407
embA4245812c.2580G>C0.407
embA4245813p.Pro861Ala0.407
embA4245820p.Ser863Thr0.393
embA4245824c.2592G>C0.393
embA4245833c.2601G>C0.400
embA4245842c.2610G>C0.407
embA4245845c.2613T>C0.407
embA4245851c.2619G>C0.400
embA4245860c.2628C>G0.415
embA4246164c.2932T>C0.345
embA4246184c.2952A>C0.405
embA4246196c.2964C>G0.405
embA4246205c.2973A>G0.410
embA4246211c.2979T>C0.415
embA4246217c.2985G>A0.415
embA4246220c.2988T>C0.415
embA4246223c.2991C>T0.455
embA4246227p.Ile999Val0.488
embA4246235c.3003G>A0.554
embA4246242p.Gln1004Gly0.574
embA4246250c.3018G>C0.589
embA4246256c.3024G>T0.614
embA4246259c.3027G>C0.610
embA4246264p.His1011Arg0.632
embA4246292c.3060A>G0.667
embA4246305p.Ser1025Glu0.581
embA4246308p.Thr1026Ala0.597
embA4246316c.3084T>G0.623
embA4246319c.3087G>C0.632
embA4246329p.Thr1033Ala0.657
embA4246349c.3117C>G0.632
embA4246359p.Ala1043Ser0.569
embA4246367c.3135C>T0.564
embA4246373c.3141T>C0.538
embA4246376c.3144G>C0.519
embA4246379c.3147C>T0.528
embA4246400c.3168G>C0.500
embA4246413p.His1061Phe0.426
embA4246419c.3187C>T0.396
embB4246544p.Thr11Pro0.130
embB4246548p.Pro12Gln0.192
embB4246555c.42G>C0.154
embB4246556p.Ala15Pro0.154
embB4246563p.Leu17Trp0.138
embB4247365c.852A>C0.174
embB4247371c.858C>G0.200
embB4247375p.Leu288Val0.261
embB4247386c.873T>C0.385
embB4247389c.876C>G0.385
embB4247395c.882C>G0.484
embB4247401c.888T>C0.526
embB4247407c.894G>C0.585
embB4247425c.912G>C0.652
embB4247434c.921C>G0.711
embB4247437c.924A>G0.711
embB4247440c.927C>G0.711
embB4247446c.933C>T0.762
embB4247464c.951C>G0.806
embB4247470c.957T>C0.781
embB4247491c.978G>C0.770
embB4247497c.984T>C0.767
embB4247512c.999T>C0.766
embB4247539c.1026T>C0.703
embB4247554c.1041T>C0.672
embB4247566c.1053C>A0.617
embB4247572c.1059A>G0.614
embB4247579p.Ala356Phe0.478
embB4247587c.1074G>A0.405
embB4247603c.1090C>T0.366
embB4247611c.1098G>T0.341
embB4247614c.1101T>C0.350
embB4247629c.1116C>G0.353
embB4247632c.1119C>G0.303
embB4247638c.1125G>T0.242
embB4247646p.Glu378Ala0.133
embB4247683c.1170C>G0.391
embB4247692c.1179C>G0.392
embB4247716c.1203C>T0.413
embB4247722c.1209G>C0.413
embB4247725c.1212G>C0.406
embB4247729p.Gly406Pro0.406
embB4247746c.1233C>T0.540
embB4247761c.1248T>C0.578
embB4247773c.1260G>A0.596
embB4247776c.1263G>T0.608
embB4247797c.1284C>G0.650
embB4247800c.1287A>T0.650
embB4247803c.1290G>C0.653
embB4247815c.1302C>G0.657
embB4247819p.Val436Ile0.644
embB4247830c.1317A>G0.647
embB4247836c.1323A>G0.640
embB4247839c.1326G>C0.646
embB4247866c.1353G>C0.747
embB4247875c.1362G>C0.696
embB4247876c.1363C>T0.696
embB4247881c.1368G>C0.704
embB4247887c.1374C>T0.722
embB4247893c.1380C>T0.722
embB4247899p.Met462Ile0.758
embB4247905c.1392G>C0.761
embB4247909c.1396T>C0.756
embB4247914c.1401G>C0.747
embB4247932c.1419C>G0.731
embB4247940p.Leu476Trp0.737
embB4247945c.1432T>C0.744
embB4247951p.Ser480Ala0.734
embB4247956c.1443G>C0.725
embB4247974c.1461C>G0.744
embB4248007c.1494C>G0.600
embB4248011p.Ser500Arg0.600
embB4248014p.Thr501Ala0.582
embB4248035p.Val508Ile0.618
embB4248040c.1527C>G0.594
embB4248041p.Ala510Thr0.594
embB4248044p.Lys511Ala0.603
embB4248070c.1557T>C0.667
embB4248085c.1572T>C0.651
embB4248097c.1584C>G0.632
embB4248130c.1617G>C0.696
embB4248142c.1629T>C0.694
embB4248143c.1630T>C0.703
embB4248157c.1644A>G0.699
embB4248172c.1659G>C0.694
embB4248199c.1686A>G0.612
embB4248200p.Ile563Val0.373
embB4248205c.1692C>G0.612
embB4248206p.Ser565Gly0.621
embB4248220c.1707A>C0.698
embB4248304c.1791G>C0.688
embB4248316c.1803C>G0.688
embB4248319c.1806A>G0.688
embB4248343c.1830G>C0.692
embB4248350c.1837T>C0.630
embB4248355c.1842A>G0.574
embB4248358c.1845C>G0.574
embB4248361c.1848A>C0.553
embB4248362p.Ser617Ala0.553
embB4248373c.1860C>G0.618
embB4248382c.1869C>G0.686
embB4248386c.1873C>A0.638
embB4248407p.Leu632Val0.514
embB4248410p.Phe633Leu0.500
embB4248419p.Leu636Met0.531
embB4248425c.1912T>C0.515
embB4248430c.1917T>C0.486
embB4248432p.Trp640Phe0.486
embB4248457c.1944T>C0.596
embB4248472c.1959T>C0.526
embB4248475c.1962G>C0.526
embB4248504p.Asp664Gly0.491
embB4248508c.1995G>A0.462
embB4248512p.Thr667Ser0.451
embB4248535c.2022C>G0.404
embB4249369c.2856T>C0.317
embB4249375c.2862G>C0.310
embB4249381c.2868A>G0.366
embB4249384c.2871G>T0.395
embB4249417c.2904A>G0.500
embB4249423p.Asp970Glu0.481
embB4249424p.Leu971Met0.481
embB4249429c.2916C>T0.510
embB4249432c.2919A>G0.500
embB4249441c.2928A>G0.559
embB4249444c.2931T>C0.567
embB4249469p.Leu986Met0.552
embB4249486c.2973T>G0.535
embB4249498c.2985G>C0.528
embB4249521p.Ala1003Val0.439
embB4249525c.3012T>C0.446
embB4249529p.Ile1006Val0.429
embB4249532p.Ala1007Thr0.418
embB4249537c.3024A>G0.404
embB4249543c.3030G>C0.431
embB4249546c.3033G>A0.431
embB4249558c.3045A>C0.449
embB4249568p.Ser1019Thr0.356
embB4249573c.3060T>C0.348
embB4249580p.Leu1023Met0.295
embB4249594c.3081G>C0.282
embB4249606c.3093C>A0.229
embB4249609c.3096T>C0.212
embB4249615c.3102C>G0.156
embB4249618c.3105C>G0.167
embB4249624c.3111C>G0.154
embB4249627c.3114G>C0.160
ethA4327396c.78A>G0.674
ethA4327399p.Asp25Glu0.674
ethA4327423c.51G>C0.646
ethA4327435c.39T>G0.609
ethA4327438c.36A>G0.591
ethA4327452p.Val8Leu0.615
ethA4327453c.21A>G0.615
ethA4327459c.15G>A0.575
ethA4327468c.6G>A0.564
gid4407588c.615T>C1.000
gid4407912c.291G>C0.935
gid4407927p.Glu92Asp1.000

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
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