This tool processes raw sequence data to infer strain type and identify known drug resistance markers.

A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.

This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.

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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).

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Drug1	Resistance	Supporting Mutations (frequency)
Isoniazid
Rifampicin
Ethambutol
Pyrazinamide
Streptomycin
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2	Family	Main Spoligotype	RDS
lineage2.2.1	East-Asian (Beijing)	Beijing-RD181	RD105;RD207;RD181

Gene	Chromosome Position	Mutation	Estimated fraction
gyrB	6086	p.Thr283Pro	1.000
gyrB	6097	c.858G>A	1.000
gyrB	6100	c.861G>C	1.000
gyrB	6109	c.870G>C	1.000
gyrB	6115	c.876A>G	1.000
gyrB	6123	p.Ala295Gly	1.000
gyrB	6130	c.891T>C	1.000
gyrB	6133	c.894G>C	1.000
gyrB	6175	c.936G>A	0.962
gyrB	6181	c.942C>A	0.960
gyrB	6184	c.945C>T	0.960
gyrB	6196	c.957C>T	0.944
gyrB	6727	c.1488G>T	0.941
gyrB	6728	c.1489C>T	0.941
gyrB	6745	c.1506T>C	0.957
gyrB	6751	c.1512G>C	0.957
gyrB	6760	c.1521G>C	0.957
gyrB	6769	c.1530C>T	1.000
gyrB	6775	c.1536G>C	1.000
gyrB	6793	c.1554T>C	1.000
gyrB	6797	p.Gly520Thr	1.000
gyrB	6808	c.1569C>T	1.000
gyrB	6811	c.1572C>T	1.000
gyrB	6838	c.1599C>G	1.000
gyrB	6841	c.1602T>C	1.000
gyrB	6844	c.1605T>G	1.000
gyrB	6853	c.1614A>G	1.000
gyrB	6856	c.1617T>C	1.000
gyrB	6859	c.1620T>C	1.000
gyrB	6955	c.1716G>A	1.000
gyrB	6963	575RS>575RQ	1.000
gyrB	6970	p.Asp577Glu	1.000
gyrB	6982	c.1743A>C	1.000
gyrB	7012	c.1773G>C	1.000
gyrB	7108	c.1869G>A	0.929
gyrB	7123	c.1884C>G	0.933
gyrB	7126	c.1887G>A	0.933
gyrB	7129	c.1890T>G	0.933
gyrB	7132	c.1893T>G	0.947
gyrB	7153	c.1914G>T	0.957
gyrB	7156	c.1917C>T	0.957
gyrB	7159	c.1920C>T	0.957
gyrB	7162	c.1923C>T	0.957
gyrB	7165	c.1926C>T	0.958
gyrB	7168	c.1929C>G	0.962
gyrB	7178	c.1939T>C	0.976
gyrB	7210	p.Asp657Glu	0.953
gyrB	7213	c.1974G>A	0.953
gyrB	7225	c.1986T>C	0.975
gyrB	7234	c.1995C>T	0.971
gyrB	7243	c.2004G>A	0.971
gyrB	7246	c.2007T>C	0.968
gyrA	7343	c.42G>T	0.938
gyrA	7355	c.54T>C	0.842
gyrA	7362	p.Glu21Gln	1.000
gyrA	7391	c.90C>T	0.897
gyrA	7394	c.93T>C	0.897
gyrA	7397	c.96G>C	0.906
gyrA	7406	c.105G>C	0.912
gyrA	7412	c.111C>G	0.943
gyrA	7418	c.117C>T	0.947
gyrA	7433	c.132G>A	0.933
gyrA	7442	c.141G>C	0.935
gyrA	7457	c.156T>C	0.943
gyrA	7463	c.162G>C	0.942
gyrA	7472	c.171T>C	0.940
gyrA	7475	c.174A>G	0.940
gyrA	7480	p.Phe60Tyr	0.940
gyrA	7484	c.183T>C	0.942
gyrA	7499	c.198G>C	0.981
gyrA	7526	c.225G>C	0.978
gyrA	7532	c.231T>G	0.978
gyrA	7541	c.240C>G	1.000
gyrA	7547	c.246C>T	1.000
gyrA	7565	c.264C>T	1.000
gyrA	7569	p.Ala90Ser	1.000
gyrA	7585	p.Ser95Thr	1.000
gyrA	7592	c.291G>C	0.960
gyrA	7595	c.294C>G	0.960
gyrA	7601	c.300C>T	0.955
gyrA	7607	c.306C>G	0.944
gyrA	7613	c.312G>A	0.938
gyrA	7622	c.321C>T	0.929
gyrA	7631	c.330G>C	0.833
gyrA	7637	c.336C>T	0.800
gyrA	7728	c.427A>C	0.972
gyrA	7763	c.462T>G	0.982
gyrA	7775	c.474C>T	1.000
gyrA	7784	c.483A>G	1.000
gyrA	7790	c.489G>C	1.000
gyrA	7796	c.495G>T	1.000
gyrA	7799	c.498A>G	1.000
gyrA	7802	c.501C>G	1.000
gyrA	7832	c.531G>T	1.000
gyrA	7835	c.534A>G	1.000
gyrA	7841	c.540C>T	1.000
gyrA	7847	c.546G>C	1.000
gyrA	7859	c.558A>C	1.000
gyrA	7865	c.564T>C	1.000
gyrA	7886	c.585T>G	1.000
gyrA	7898	p.Asp199Glu	0.909
gyrA	8156	c.855T>C	0.923
gyrA	8168	c.867A>G	1.000
gyrA	8174	c.873C>G	1.000
gyrA	8177	c.876A>C	1.000
gyrA	8191	p.Ala297Gly	1.000
gyrA	8198	c.897T>C	1.000
gyrA	8207	c.906T>C	1.000
gyrA	8210	c.909G>A	1.000
gyrA	8219	c.918T>C	1.000
gyrA	8222	c.921C>T	1.000
gyrA	8225	c.924T>C	1.000
gyrA	8267	c.966G>C	1.000
gyrA	8283	p.Ile328Leu	1.000
gyrA	8288	c.987T>C	0.972
gyrA	8294	c.993T>C	1.000
gyrA	8324	c.1023T>C	1.000
gyrA	8327	c.1026C>G	1.000
gyrA	8339	c.1038A>G	1.000
gyrA	8340	p.Ala347Ser	1.000
gyrA	8354	c.1053G>C	1.000
gyrA	8366	c.1065G>C	1.000
gyrA	8372	c.1071G>T	1.000
gyrA	8390	c.1089C>G	0.941
gyrA	8391	p.Tyr364Leu	0.941
gyrA	8399	c.1098T>G	0.941
gyrA	8408	c.1107A>G	0.941
gyrA	8414	c.1113C>T	0.941
gyrA	8420	c.1119T>C	0.941
gyrA	8480	c.1179C>T	0.818
gyrA	8486	c.1185T>C	0.867
gyrA	8504	c.1203G>C	0.895
gyrA	8510	c.1209G>A	0.895
gyrA	8513	c.1212C>G	0.895
gyrA	8516	c.1215T>C	0.895
gyrA	8519	c.1218A>G	0.895
gyrA	8520	c.1219C>T	0.895
gyrA	8535	p.Glu412Gln	0.974
gyrA	8540	c.1239C>T	0.975
gyrA	8546	p.Asp415Glu	0.977
gyrA	8561	c.1260A>C	0.978
gyrA	8571	c.1270C>T	0.979
gyrA	8603	c.1302A>C	1.000
gyrA	8619	c.1318T>C	1.000
gyrA	8624	c.1323G>C	1.000
gyrA	8627	c.1326C>G	1.000
gyrA	8628	c.1327C>T	1.000
gyrA	8633	c.1332C>T	1.000
gyrA	8636	c.1335A>C	1.000
gyrA	8828	c.1527T>C	0.900
gyrA	8829	c.1528T>C	0.900
gyrA	8837	c.1536C>G	0.909
gyrA	8840	c.1539C>T	0.917
gyrA	8852	c.1551T>C	0.933
gyrA	8858	c.1557T>G	0.875
gyrA	8867	c.1566A>G	0.875
gyrA	8870	c.1569G>C	0.875
gyrA	8873	c.1572A>G	0.875
gyrA	8876	c.1575C>T	0.875
gyrA	8897	c.1596T>C	0.889
gyrA	8903	c.1602T>C	0.889
gyrA	8915	c.1614A>G	0.889
gyrA	9275	c.1974G>A	1.000
gyrA	9293	c.1992G>C	1.000
gyrA	9296	c.1995T>C	1.000
gyrA	9304	p.Gly668Asp	1.000
gyrA	9323	c.2022C>G	1.000
gyrA	9324	c.2023T>A	1.000
gyrA	9335	c.2034G>T	1.000
gyrA	9341	c.2040C>G	1.000
gyrA	9345	c.2044A>C	1.000
gyrA	9353	c.2052G>C	1.000
gyrA	9356	c.2055G>A	1.000
gyrA	9374	c.2073G>T	1.000
gyrA	9377	c.2076A>G	1.000
gyrA	9383	c.2082T>C	1.000
gyrA	9626	c.2325T>C	0.667
gyrA	9630	p.Val777Ile	0.733
gyrA	9635	c.2334T>C	0.733
gyrA	9641	c.2340C>T	0.750
gyrA	9644	c.2343T>C	0.765
gyrA	9650	c.2349G>C	0.778
gyrA	9656	c.2355C>G	0.833
gyrA	9662	c.2361G>C	0.833
gyrA	9668	c.2367C>T	0.833
gyrA	9683	c.2382G>T	0.833
gyrA	9689	c.2388G>T	0.833
gyrA	9701	c.2400T>C	0.882
gyrA	9707	c.2406G>C	0.882
gyrA	9716	c.2415T>C	0.882
gyrA	9738	p.Leu813Ile	0.875
gyrA	9743	c.2442C>G	0.867
gyrA	9746	c.2445C>T	0.867
rpoB	760130	p.Asp108Glu	1.000
rpoB	760136	c.330G>A	1.000
rpoB	760139	c.333A>T	1.000
rpoB	760142	c.336C>G	1.000
rpoB	760181	c.375T>C	0.963
rpoB	760184	c.378A>G	0.963
rpoB	760196	c.390C>G	0.968
rpoB	760235	c.429T>C	0.914
rpoB	760244	c.438G>C	0.921
rpoB	760283	c.477G>C	0.936
rpoB	760298	c.492G>C	0.959
rpoB	760310	c.504G>C	0.980
rpoB	760316	c.510C>G	0.981
rpoB	760325	c.519G>C	0.980
rpoB	760331	c.525G>C	0.979
rpoB	760334	c.528G>T	0.979
rpoB	760340	c.534G>T	0.981
rpoB	760357	p.Thr184Ser	0.981
rpoB	760361	c.555T>C	0.981
rpoB	760376	p.Asp190Glu	1.000
rpoB	760406	c.600G>C	0.979
rpoB	760407	p.Ser201Gly	1.000
rpoB	760415	c.609C>T	1.000
rpoB	760424	c.618C>G	1.000
rpoB	760430	c.624T>C	1.000
rpoB	760433	c.627C>T	1.000
rpoB	760457	c.651C>T	1.000
rpoB	760463	c.657C>T	1.000
rpoB	760475	c.669A>G	1.000
rpoB	760478	c.672C>T	1.000
rpoB	760481	c.675G>T	1.000
rpoB	760484	c.678A>G	1.000
rpoB	760502	c.696C>G	1.000
rpoB	760522	p.Ser239Asn	1.000
rpoB	760532	c.726T>C	1.000
rpoB	760533	p.Val243Thr	1.000
rpoB	760541	c.735G>C	1.000
rpoB	760547	c.741G>C	1.000
rpoB	760561	252MRS>252MMG	1.000
rpoB	760571	c.765G>C	1.000
rpoB	760574	c.768G>C	1.000
rpoB	760585	p.Asn260Ser	1.000
rpoB	760591	p.Val262Ala	1.000
rpoB	760595	c.789C>T	1.000
rpoB	760596	p.Thr264Pro	1.000
rpoB	760611	c.805T>C	1.000
rpoB	760646	c.840C>G	1.000
rpoB	760655	c.849A>G	1.000
rpoB	760661	c.855A>C	1.000
rpoB	760670	c.864G>C	1.000
rpoB	760674	c.868T>C	1.000
rpoB	760679	c.873A>G	1.000
rpoB	760683	c.877T>C	0.976
rpoB	760703	c.897C>T	0.974
rpoB	760721	c.915C>G	0.972
rpoB	760724	c.918T>C	0.971
rpoB	760730	c.924T>C	0.971
rpoB	760748	c.942C>G	0.958
rpoB	760751	c.945G>C	0.958
rpoB	760755	p.His317Asn	0.958
rpoB	760759	p.Val318Ala	0.958
rpoB	760764	p.Glu320Gln	0.960
rpoB	760769	c.963C>G	0.962
rpoB	760778	c.972G>T	0.966
rpoB	760784	c.978G>T	0.966
rpoB	760793	c.987A>G	0.926
rpoB	760805	c.999G>C	0.917
rpoB	760817	c.1011A>G	0.895
rpoB	760820	c.1014T>C	0.895
rpoB	760826	c.1020C>G	0.882
rpoB	760830	c.1024T>C	0.882
rpoB	760841	c.1035T>C	0.952
rpoB	760859	c.1053T>C	0.952
rpoB	760862	c.1056G>C	0.952
rpoB	760877	c.1071G>T	0.952
rpoB	760883	c.1077G>C	0.952
rpoB	760886	c.1080A>G	0.952
rpoB	760887	p.Thr361Val	0.952
rpoB	760910	c.1104C>T	0.939
rpoB	760916	c.1110C>T	0.935
rpoB	760919	c.1113C>T	0.935
rpoB	760925	c.1119T>C	0.935
rpoB	760928	c.1122G>C	0.929
rpoB	760931	c.1125C>G	0.929
rpoB	760946	c.1140A>G	0.906
rpoB	760965	p.Met387Leu	0.923
rpoB	760970	c.1164G>C	0.923
rpoB	760973	c.1167G>C	0.923
rpoB	760982	c.1176G>C	0.917
rpoB	760985	c.1179G>C	0.900
rpoB	760988	c.1182C>G	0.900
rpoB	760991	c.1185G>T	0.900
rpoB	760997	c.1191G>C	0.900
rpoB	761015	c.1209G>C	0.900
rpoB	761027	c.1221A>C	0.818
rpoB	761111	c.1305C>T	1.000
rpoB	761132	c.1326G>T	1.000
rpoB	761133	c.1327T>C	1.000
rpoB	761147	c.1341C>T	1.000
rpoB	761150	c.1344A>T	1.000
rpoB	761165	c.1359G>C	1.000
rpoB	761180	c.1374A>C	1.000
rpoB	761189	c.1383T>C	1.000
rpoB	761195	c.1389G>C	1.000
rpoB	761198	c.1392G>T	0.947
rpoB	761213	c.1407G>C	1.000
rpoB	761217	p.Pro471Ser	0.944
rpoB	761234	c.1428G>C	0.952
rpoB	761249	c.1443A>G	0.964
rpoB	761261	c.1455G>T	0.957
rpoB	761264	c.1458C>G	0.917
rpoB	761282	c.1476C>T	0.938
rpoB	761288	c.1482G>T	0.943
rpoB	761312	c.1506G>T	0.955
rpoB	761318	c.1512G>T	0.955
rpoB	761327	c.1521A>G	0.977
rpoB	761330	c.1524G>C	0.977
rpoB	761345	c.1539G>C	0.977
rpoB	761354	c.1548C>T	0.975
rpoB	761360	c.1554T>C	0.946
rpoB	761362	p.Ser519Thr	0.946
rpoB	761367	p.Glu521Gln	0.944
rpoB	761374	p.Val523Asp	0.944
rpoB	761408	c.1602G>C	0.964
rpoB	761414	c.1608A>G	0.962
rpoB	761423	c.1617T>C	0.955
rpoB	761537	c.1731C>G	0.960
rpoB	761552	c.1746G>C	0.968
rpoB	761555	c.1749G>C	0.970
rpoB	761558	c.1752C>G	0.970
rpoB	761570	c.1764T>C	0.973
rpoB	761573	c.1767C>G	0.907
rpoB	761579	c.1773G>C	0.979
rpoB	761606	c.1800C>G	0.984
rpoB	761612	c.1806G>T	0.984
rpoB	761615	c.1809A>C	0.984
rpoB	761636	c.1830G>T	1.000
rpoB	761645	c.1839C>G	1.000
rpoB	761648	c.1842T>C	1.000
rpoB	761666	c.1860G>C	0.980
rpoB	761669	c.1863C>T	0.980
rpoB	761675	c.1869G>T	0.955
rpoB	761690	c.1884G>C	0.976
rpoB	761708	c.1902C>T	0.833
rpoB	761712	p.Val636Ile	0.818
rpoB	761747	c.1941G>C	0.909
rpoB	761765	c.1959T>C	0.913
rpoB	761772	p.His656Ala	0.913
rpoB	761778	p.Asn658Asp	0.875
rpoB	761785	p.Thr660Ser	0.875
rpoB	761791	p.Arg662His	0.913
rpoB	761813	c.2007T>C	0.917
rpoB	761834	c.2028T>C	0.947
rpoB	761847	p.Cys681Arg	0.875
rpoB	761852	c.2046C>G	0.875
rpoB	761885	c.2079T>C	0.889
rpoB	761891	c.2085G>C	0.889
rpoB	761892	p.Ile696Val	0.889
rpoB	761906	c.2100C>G	0.824
rpoB	761909	c.2103T>C	0.824
rpoB	761912	c.2106T>C	0.824
rpoB	761915	p.Asp703Glu	0.824
rpoB	761916	p.Asp704Asn	0.824
rpoB	761921	c.2115C>T	0.833
rpoB	761930	c.2124G>C	0.926
rpoB	761948	c.2142G>C	0.933
rpoB	761954	c.2148C>G	0.939
rpoB	761969	c.2163G>A	0.921
rpoB	762008	c.2202C>T	0.976
rpoB	762014	c.2208C>T	0.979
rpoB	762047	c.2241G>A	1.000
rpoB	762053	c.2247T>C	1.000
rpoB	762065	c.2259T>C	1.000
rpoB	762083	c.2277T>C	1.000
rpoB	762086	c.2280G>C	1.000
rpoB	762101	c.2295C>G	1.000
rpoB	762114	p.Ile770Val	0.978
rpoB	762131	c.2325C>G	0.971
rpoB	762134	c.2328C>A	0.969
rpoB	762137	c.2331C>T	0.969
rpoB	762140	c.2334G>C	0.969
rpoB	762143	c.2337T>C	0.971
rpoB	762149	c.2343G>C	0.980
rpoB	762158	c.2352G>C	0.982
rpoB	762167	c.2361T>C	0.963
rpoB	762176	c.2370T>C	0.963
rpoB	762185	c.2379G>C	0.966
rpoB	762224	c.2418C>G	0.957
rpoB	762233	c.2427G>C	0.959
rpoB	762245	c.2439G>C	0.971
rpoB	762284	c.2478G>T	0.943
rpoB	762293	c.2487T>C	0.933
rpoB	762308	c.2502G>C	0.921
rpoB	762314	c.2508C>T	0.943
rpoB	762317	c.2511A>G	0.943
rpoB	762329	c.2523G>C	0.914
rpoB	762338	c.2532T>C	0.926
rpoB	762341	c.2535G>C	0.889
rpoB	762347	c.2541T>C	0.931
rpoB	762350	c.2544C>T	0.900
rpoB	762362	p.Glu852Asp	0.943
rpoB	762369	c.2563T>C	1.000
rpoB	762374	c.2568G>C	0.935
rpoB	762380	c.2574T>C	0.933
rpoB	762395	c.2589G>C	0.952
rpoB	762398	c.2592T>C	0.952
rpoB	762401	c.2595G>C	0.952
rpoB	762404	c.2598T>C	0.952
rpoB	762410	c.2604T>C	0.962
rpoB	762416	c.2610A>G	0.964
rpoB	762434	c.2628T>C	0.943
rpoB	762443	c.2637G>C	0.919
rpoB	762449	c.2643C>A	0.946
rpoB	762452	c.2646G>C	0.921
rpoB	762470	c.2664G>C	0.932
rpoB	762491	c.2685T>C	0.976
rpoB	762509	c.2703T>G	0.963
rpoB	762510	p.Ala902Pro	0.962
rpoB	762515	c.2709C>T	0.962
rpoB	762533	c.2727T>C	0.957
rpoB	762536	c.2730T>C	0.955
rpoB	762537	c.2731T>C	0.955
rpoB	762551	c.2745C>T	0.905
rpoB	762560	c.2754A>T	0.889
rpoB	762563	c.2757G>T	0.882
rpoB	762812	c.3006C>G	0.882
rpoB	762814	p.Met1003Thr	0.824
rpoB	762816	c.3010C>T	0.824
rpoB	762827	c.3021G>T	0.913
rpoB	762833	c.3027C>T	0.929
rpoB	762839	c.3033G>A	0.966
rpoB	762857	c.3051C>G	1.000
rpoB	762863	c.3057T>C	1.000
rpoB	762879	p.Met1025Leu	0.975
rpoB	762917	c.3111C>G	1.000
rpoB	762920	c.3114C>T	1.000
rpoB	762929	c.3123G>C	1.000
rpoB	762959	c.3153G>C	1.000
rpoB	762962	c.3156C>T	1.000
rpoB	762995	c.3189G>T	1.000
rpoB	763004	c.3198G>A	1.000
rpoB	763007	c.3201C>T	1.000
rpoB	763022	c.3216C>G	1.000
rpoB	763028	c.3222T>C	1.000
rpoB	763031	c.3225T>G	1.000
rpoB	763053	c.3247T>C	1.000
rpoB	763070	c.3264T>C	1.000
rpoB	763085	c.3279C>G	1.000
rpoB	763103	c.3297G>C	1.000
rpoB	763115	c.3309T>C	0.969
rpoB	763127	c.3321G>C	0.958
rpoB	763130	c.3324G>A	0.958
rpoB	763133	c.3327G>C	0.957
rpoB	763136	c.3330C>T	0.957
rpoB	763142	c.3336C>G	0.957
rpoB	763160	c.3354G>T	0.947
rpoB	763166	c.3360A>G	0.941
rpoB	763169	c.3363A>G	0.941
rpoB	763190	c.3384C>T	1.000
rpoC	763375	c.6C>A	1.000
rpoC	763408	c.39T>C	1.000
rpoC	763411	c.42T>C	1.000
rpoC	763414	c.45T>C	1.000
rpoC	763423	p.Glu18Asp	1.000
rpoC	763430	c.61A>C	1.000
rpoC	763433	p.Gln22Asn	1.000
rpoC	763443	p.Tyr25Phe	1.000
rpoC	763456	c.87A>G	1.000
rpoC	763468	c.99G>C	1.000
rpoC	763486	c.117T>C	1.000
rpoC	763492	c.123G>T	1.000
rpoC	763528	c.159G>A	1.000
rpoC	763546	c.177A>G	1.000
rpoC	763558	c.189C>T	1.000
rpoC	763570	c.201G>C	1.000
rpoC	763573	c.204G>C	1.000
rpoC	763594	c.225C>T	1.000
rpoC	763603	c.234C>T	1.000
rpoC	763615	c.246G>C	1.000
rpoC	763618	c.249C>T	1.000
rpoC	763633	c.264T>C	1.000
rpoC	763660	c.291T>G	1.000
rpoC	763666	c.297G>A	1.000
rpoC	763675	c.306C>G	1.000
rpoC	763702	c.333C>G	1.000
rpoC	763709	c.340C>T	1.000
rpoC	763714	c.345G>C	1.000
rpoC	763717	c.348T>C	1.000
rpoC	763723	c.354G>C	1.000
rpoC	763732	c.363C>T	1.000
rpoC	763741	c.372C>T	0.982
rpoC	763747	c.378G>A	0.963
rpoC	763765	c.396T>G	0.979
rpoC	763792	p.Glu141Asp	0.965
rpoC	763807	c.438T>C	0.980
rpoC	763813	c.444C>G	0.957
rpoC	763831	c.462A>G	0.953
rpoC	763837	c.468G>C	0.949
rpoC	763840	c.471G>C	0.973
rpoC	763858	c.489A>G	1.000
rpoC	763861	c.492C>T	0.967
rpoC	763872	p.Gly168Ala	1.000
rpoC	763876	p.Glu169Asp	1.000
rpoC	763879	c.510A>G	1.000
rpoC	763882	c.513G>A	0.962
rpoC	763891	c.522G>C	1.000
rpoC	763894	c.525A>G	1.000
rpoC	763900	c.531G>C	1.000
rpoC	763921	c.552G>C	1.000
rpoC	763924	c.555G>A	1.000
rpoC	764131	c.762T>C	0.950
rpoC	764134	c.765C>G	0.949
rpoC	764153	p.Gln262Lys	0.953
rpoC	764161	c.792G>C	0.932
rpoC	764182	p.Asp271Glu	0.953
rpoC	764188	c.819A>G	0.949
rpoC	764195	c.826T>A	0.923
rpoC	764203	c.834G>C	0.923
rpoC	764206	p.Asp279Glu	0.923
rpoC	764207	p.Val280Thr	0.923
rpoC	764215	c.846A>C	0.923
rpoC	764217	p.Asn283Ser	0.962
rpoC	764239	c.870T>G	0.981
rpoC	764254	c.885G>C	0.956
rpoC	764257	c.888G>C	0.956
rpoC	764263	c.894G>C	0.958
rpoC	764266	c.897T>C	0.958
rpoC	764272	c.903G>C	0.957
rpoC	764278	c.909A>G	0.958
rpoC	764293	c.924G>C	0.958
rpoC	764297	p.Met310Leu	0.959
rpoC	764344	c.975C>T	0.979
rpoC	764353	c.984G>T	0.980
rpoC	764365	c.996C>T	0.978
rpoC	764371	c.1002G>C	0.976
rpoC	764380	c.1011G>C	0.975
rpoC	764387	c.1018T>C	0.978
rpoC	764405	c.1036A>C	1.000
rpoC	764431	c.1062G>C	1.000
rpoC	764434	c.1065A>G	1.000
rpoC	764435	c.1066A>C	1.000
rpoC	764446	c.1077T>C	1.000
rpoC	764449	c.1080G>C	1.000
rpoC	764458	c.1089G>C	1.000
rpoC	764461	c.1092A>G	1.000
rpoC	764485	c.1116G>C	1.000
rpoC	764491	c.1122G>T	1.000
rpoC	764497	c.1128A>G	1.000
rpoC	764500	c.1131C>G	1.000
rpoC	764521	c.1152T>C	1.000
rpoC	764536	c.1167G>T	1.000
rpoC	764539	c.1170C>G	1.000
rpoC	764575	c.1206T>G	0.960
rpoC	764605	c.1236G>C	0.936
rpoC	764611	c.1242G>T	0.979
rpoC	764623	c.1254C>G	0.956
rpoC	764626	c.1257C>T	0.953
rpoC	764632	c.1263T>C	0.953
rpoC	764650	c.1281G>T	0.956
rpoC	764701	c.1332C>G	0.925
rpoC	764713	c.1344G>T	0.938
rpoC	764716	c.1347G>C	0.938
rpoC	764746	c.1377G>T	0.953
rpoC	764752	c.1383G>C	0.976
rpoC	764758	c.1389C>G	0.953
rpoC	764764	c.1395T>C	0.975
rpoC	764803	c.1434C>T	1.000
rpoC	764809	c.1440C>T	1.000
rpoC	764815	c.1446A>G	1.000
rpoC	764824	c.1455T>C	1.000
rpoC	764827	c.1458G>C	1.000
rpoC	764851	c.1482C>T	1.000
rpoC	764858	c.1489T>C	1.000
rpoC	764869	c.1500C>T	1.000
rpoC	764875	c.1506C>T	1.000
rpoC	764878	c.1509C>G	1.000
rpoC	764887	c.1518G>C	1.000
rpoC	764888	c.1519T>C	1.000
rpoC	764911	c.1542A>G	1.000
rpoC	764912	p.Met515Gln	1.000
rpoC	764932	c.1563C>A	1.000
rpoC	764935	c.1566T>C	1.000
rpoC	764948	c.1579T>C	0.979
rpoC	764968	c.1599T>C	0.976
rpoC	765007	c.1638T>G	0.857
rpoC	765008	c.1639T>C	0.857
rpoC	765011	c.1642A>T	0.857
rpoC	765016	c.1647C>A	0.857
rpoC	765022	c.1653G>T	0.857
rpoC	765034	c.1665T>C	0.857
rpoC	765040	c.1671T>C	0.800
rpoC	765041	c.1672T>C	0.800
rpoC	765047	c.1678T>C	0.800
rpoC	765055	c.1686C>G	0.800
rpoC	765338	p.Gln657Lys	0.923
rpoC	765352	c.1983G>C	1.000
rpoC	765357	p.Met663Thr	1.000
rpoC	765361	c.1992C>G	1.000
rpoC	765383	p.Met672Leu	1.000
rpoC	765400	c.2031G>C	1.000
rpoC	765403	c.2034G>C	1.000
rpoC	765404	p.Leu679Lys	1.000
rpoC	765409	c.2040T>C	1.000
rpoC	765412	c.2043T>C	1.000
rpoC	765425	p.Lys686Glu	0.975
rpoC	765445	c.2076G>C	0.977
rpoC	765452	p.Ala695Arg	0.973
rpoC	765466	c.2097C>T	0.979
rpoC	765478	c.2109T>C	0.980
rpoC	765480	p.Tyr704Phe	0.980
rpoC	765496	c.2127C>G	0.964
rpoC	765499	c.2130C>G	0.963
rpoC	765529	c.2160C>T	0.936
rpoC	765533	p.Tyr722His	0.935
rpoC	765548	c.2179A>T	0.912
rpoC	765553	c.2184C>T	0.912
rpoC	765556	c.2187G>C	0.912
rpoC	765562	c.2193G>C	0.912
rpoC	765577	c.2208G>T	0.935
rpoC	765591	p.Arg741Gln	0.895
rpoC	765596	p.Lys743Gln	0.850
rpoC	765772	c.2403C>G	0.950
rpoC	765778	c.2409C>G	0.950
rpoC	765779	p.Asp804Lys	0.950
rpoC	765793	c.2424C>G	0.967
rpoC	765796	c.2427C>T	0.969
rpoC	765800	p.Phe811Leu	0.969
rpoC	765811	c.2442T>G	0.943
rpoC	765814	c.2445A>C	0.943
rpoC	765817	c.2448G>C	0.917
rpoC	765823	c.2454C>A	0.919
rpoC	765826	c.2457T>C	0.946
rpoC	765835	c.2466C>T	0.976
rpoC	765871	c.2502T>C	0.957
rpoC	765875	p.Val836Ile	0.957
rpoC	765886	c.2517C>G	0.978
rpoC	765904	c.2535C>G	0.952
rpoC	765908	c.2539C>T	0.958
rpoC	765934	c.2565C>T	0.943
rpoC	765940	c.2571A>T	0.938
rpoC	765946	c.2577C>T	0.929
rpoC	765947	c.2578T>C	0.964
rpoC	765952	c.2583G>C	0.929
rpoC	765961	c.2592G>T	1.000
rpoC	765962	c.2593T>C	0.962
rpoC	765967	c.2598C>T	0.962
rpoC	765979	c.2610C>G	0.960
rpoC	765982	c.2613C>T	0.957
rpoC	765994	c.2625A>T	0.952
rpoC	766012	c.2643C>G	0.944
rpoC	766021	c.2652G>C	0.875
rpoC	766027	c.2658G>T	0.833
rpoC	766345	c.2976T>C	0.935
rpoC	766348	c.2979A>G	0.935
rpoC	766363	c.2994G>C	0.935
rpoC	766381	c.3012C>T	0.927
rpoC	766384	c.3015A>G	0.927
rpoC	766390	c.3021C>T	0.925
rpoC	766408	c.3039C>T	0.912
rpoC	766690	c.3321G>C	0.778
rpoC	766694	p.Gln1109Asp	0.789
rpoC	766714	c.3345G>C	0.840
rpoC	766717	c.3348C>G	0.846
rpoC	766720	c.3351C>T	0.846
rpoC	766726	c.3357T>C	0.914
rpoC	766738	c.3369G>T	0.919
rpoC	766741	c.3372G>C	0.897
rpoC	766765	c.3396A>C	0.929
rpoC	766771	c.3402G>C	0.929
rpoC	766774	c.3405T>C	0.929
rpoC	766775	p.Arg1136Lys	0.929
rpoC	766798	c.3429C>G	0.963
rpoC	766804	c.3435A>G	0.963
rpoC	766837	c.3468G>C	0.972
rpoC	766843	c.3474T>C	0.971
rpoC	766846	c.3477C>G	0.968
rpoC	766931	p.Ala1188Thr	0.867
rpoC	766942	c.3573C>T	0.875
rpoC	766945	c.3576A>C	0.882
rpoC	766948	c.3579G>C	0.882
rpoC	766963	c.3594T>C	0.920
rpoC	766978	c.3609C>T	0.929
rpoC	766981	c.3612T>C	0.929
rpoC	766996	c.3627C>T	0.944
rpoC	767002	c.3633G>C	0.947
rpoC	767008	c.3639G>A	0.949
rpoC	767023	c.3654C>T	0.977
rpoC	767098	c.3729T>C	1.000
rpoC	767104	c.3735C>G	1.000
rpoC	767105	p.Asn1246Gln	1.000
rpoC	767119	c.3750A>G	1.000
rpoC	767134	c.3765C>T	0.980
rpoC	767138	c.3769C>T	0.981
rpoC	767158	c.3789T>C	0.973
rpoC	767162	p.Asn1265Ala	0.971
rpoC	767167	c.3798C>T	0.972
rpoC	767174	p.Asn1269Asp	0.972
rpoC	767180	p.Ala1271Gln	0.972
rpoC	767191	c.3822C>G	0.978
rpoC	767197	c.3828G>A	0.978
rpoC	767221	c.3852C>G	0.974
rpoC	767230	c.3861G>C	0.943
rpoC	767233	c.3864T>C	0.941
rpoC	767263	c.3894T>C	0.850
rpoC	767264	p.Ala1299Gln	0.850
rpoC	767278	c.3909T>C	0.833
rpoC	767281	c.3912C>G	0.882
rpoC	767284	c.3915C>G	0.882
rpoC	767296	c.3927C>T	0.882
rpsL	781559	c.-1G>C	0.917
rpsL	781572	p.Gln5Asn	0.933
rpsL	781595	c.36T>C	0.952
rpsL	781598	c.39G>C	0.952
rpsL	781605	p.Ile16Val	0.952
rpsL	781608	p.Ser17Ala	0.952
rpsL	781628	c.69T>C	0.969
rpsL	781631	c.72G>C	0.969
rpsL	781649	c.90T>C	1.000
rpsL	781655	c.96T>C	1.000
rpsL	781658	c.99A>G	1.000
rpsL	781682	c.123T>C	1.000
rpsL	781709	c.150G>C	1.000
rpsL	781715	c.156T>C	1.000
rpsL	781728	c.169T>C	1.000
rpsL	781742	c.183C>T	0.960
rpsL	781751	c.192G>C	0.976
rpsL	781760	c.201T>C	0.978
rpsL	781772	c.213C>T	0.980
rpsL	781808	c.249C>T	0.978
rpsL	781814	c.255C>T	0.956
rpsL	781817	c.258G>T	0.957
rpsL	781829	c.270G>C	0.959
rpsL	781832	c.273T>C	0.979
rpsL	781838	c.279G>C	1.000
rpsL	781841	c.282C>T	1.000
rpsL	781859	c.300T>G	0.978
rpsL	781865	c.306G>C	1.000
rpsL	781868	c.309T>C	1.000
rpsL	781871	c.312G>C	1.000
rpsL	781892	c.333A>G	1.000
rpsL	781898	c.339A>C	1.000
rpsL	781901	c.342C>T	0.978
rpsL	781907	c.348T>C	0.978
rpsL	781916	c.357T>C	0.979
rpsL	781929	p.Gly124Ser	0.979
rplC	800895	c.87C>G	0.700
rplC	800904	c.96G>C	0.850
rplC	800916	c.108A>G	0.857
rplC	800921	p.Arg38Leu	0.857
rplC	800928	c.120C>T	0.900
rplC	800931	c.123G>C	0.857
rplC	800937	c.129A>G	0.857
rplC	800946	c.138T>C	0.857
rplC	800949	c.141T>C	0.900
rplC	800964	c.156G>C	0.900
rplC	800985	c.177A>G	0.947
rplC	801003	c.195G>C	0.909
rplC	801004	p.Leu66Val	0.909
rplC	801009	c.201A>C	0.909
rplC	801012	c.204T>C	0.909
rplC	801019	p.Thr71Ala	0.909
rplC	801027	c.219C>G	0.833
rplC	801039	c.231A>G	0.833
rplC	801195	c.387G>T	0.941
rplC	801205	p.Arg133Ala	0.889
rplC	801210	c.402T>C	0.889
rplC	801220	p.Ser138Ala	0.889
rplC	801237	c.429G>A	0.889
rplC	801252	c.444G>C	0.842
rplC	801264	c.456C>T	0.842
rplC	801267	c.459A>C	0.842
rplC	801276	c.468G>C	0.842
rplC	801281	p.Ala158Gly	0.842
rplC	801285	c.477G>C	0.842
rrs	1471922	r.77gt>g	1.000
rrs	1471925	r.80t>c	1.000
rrs	1471931	r.86ga>g	1.000
rrs	1471934	r.89a>g	1.000
rrs	1471986	r.141c>t	1.000
rrs	1472019	r.174g>a	1.000
rrs	1472023	r.178g>t	1.000
rrs	1472031	r.186g>c	1.000
rrs	1472033	r.188a>c	1.000
rrs	1472035	r.190g>t	1.000
rrs	1472040	r.195t>g	1.000
rrs	1472041	r.196c>t	1.000
rrs	1472042	r.197t>g	1.000
rrs	1472053	r.208agc>a	1.000
rrs	1472061	r.216a>t	1.000
rrs	1472075	r.230a>g	1.000
rrs	1472106	r.261g>a	1.000
rrs	1472108	r.263c>t	1.000
rrs	1472150	r.305t>a	1.000
rrs	1472251	r.406g>a	1.000
rrs	1472313	r.468g>a	0.800
rrs	1472315	r.470t>g	0.800
rrs	1472324	r.479g>c	0.800
rrs	1472325	r.480g>c	0.800
rrs	1472327	r.482g>a	0.800
rrs	1472328	r.483g>t	0.818
rrs	1472337	r.492c>g	0.955
rrs	1472380	r.535g>c	0.971
rrs	1472446	r.601t>a	1.000
rrs	1472452	r.607g>a	1.000
rrs	1472464	r.619a>g	1.000
rrs	1472846	r.1001c>a	0.981
rrs	1472847	r.1002g>c	0.981
rrs	1472849	r.1004c>g	0.981
rrs	1472850	r.1005t>c	0.981
rrs	1472857	r.1012a>g	0.980
rrs	1472858	r.1013g>t	0.981
rrs	1472860	r.1015c>g	0.981
rrs	1472861	r.1016g>t	0.981
rrs	1472973	r.1128a>t	0.987
rrs	1473104	r.1259c>t	0.976
rrs	1473110	r.1265t>g	0.974
rrs	1473111	r.1266a>g	0.974
rrs	1473120	r.1275c>ct	0.895
rrs	1473123	r.1278a>c	0.971
rrs	1473276	r.1431a>g	0.989
rrs	1473290	r.1445c>t	1.000
rrs	1473291	r.1446g>gt	0.959
rrs	1473301	r.1456t>c	1.000
rrl	1473668	r.11c>t	0.953
rrl	1473696	r.39t>c	0.981
rrl	1473697	r.40c>t	0.981
rrl	1473699	r.42a>g	0.982
rrl	1473717	r.60g>t	0.987
rrl	1473746	r.89t>c	0.988
rrl	1473758	r.101g>t	0.988
rrl	1473770	r.113t>g	0.989
rrl	1473788	r.131a>g	1.000
rrl	1473806	r.149c>t	1.000
rrl	1473807	r.150t>c	1.000
rrl	1473823	r.166t>c	1.000
rrl	1473829	r.172g>t	1.000
rrl	1473830	r.173t>g	1.000
rrl	1473831	r.174g>t	1.000
rrl	1473832	r.175c>a	1.000
rrl	1473876	r.219g>a	1.000
rrl	1473887	r.230t>a	1.000
rrl	1473898	r.241c>t	1.000
rrl	1473899	r.242a>g	1.000
rrl	1473916	r.259c>a	1.000
rrl	1473922	r.265a>g	1.000
rrl	1473923	r.266c>g	1.000
rrl	1473935	r.278c>t	1.000
rrl	1473937	r.280c>t	1.000
rrl	1473943	r.286g>t	1.000
rrl	1473945	r.288t>a	1.000
rrl	1473946	r.289a>t	1.000
rrl	1474044	r.387c>t	1.000
rrl	1474045	r.388c>t	1.000
rrl	1474053	r.396g>a	1.000
rrl	1474054	r.397t>c	1.000
rrl	1474083	r.426c>t	1.000
rrl	1474091	r.434c>t	1.000
rrl	1474093	r.436g>a	1.000
rrl	1474096	r.439c>t	1.000
rrl	1474099	r.442g>a	1.000
rrl	1474108	r.451c>g	1.000
rrl	1474135	r.478g>a	0.985
rrl	1474140	r.483c>t	0.986
rrl	1474151	r.494c>t	0.988
rrl	1474174	r.517a>g	0.952
rrl	1474181	r.524c>t	0.974
rrl	1474183	r.526t>c	0.946
rrl	1474185	r.528g>a	0.946
rrl	1474186	r.529a>g	0.947
rrl	1474249	r.592g>t	0.976
rrl	1474266	r.609t>c	0.944
rrl	1474269	r.612c>t	0.941
rrl	1474289	r.632c>t	0.875
rrl	1474292	r.635t>g	0.966
rrl	1474308	r.651g>t	0.966
rrl	1474310	r.653t>g	0.968
rrl	1474362	r.705a>g	1.000
rrl	1474414	r.757c>t	1.000
rrl	1474417	r.760acacgcgc>a	1.000
rrl	1474427	r.770a>c	1.000
rrl	1474430	r.773c>g	1.000
rrl	1474432	r.775c>g	1.000
rrl	1474434	r.777t>ttg	1.000
rrl	1474446	r.789c>t	0.978
rrl	1474626	r.969t>c	1.000
rrl	1474627	r.970g>a	0.977
rrl	1474629	r.972g>a	0.977
rrl	1474632	r.975g>t	1.000
rrl	1474636	r.979a>t	1.000
rrl	1474637	r.980c>t	1.000
rrl	1474638	r.981c>g	1.000
rrl	1474639	r.982g>t	1.000
rrl	1474640	r.983c>t	1.000
rrl	1474673	r.1016t>c	0.986
rrl	1474676	r.1019t>a	0.986
rrl	1474677	r.1020a>g	0.986
rrl	1474710	r.1053t>a	1.000
rrl	1474711	r.1054g>c	1.000
rrl	1474712	r.1055g>a	1.000
rrl	1474713	r.1056t>a	1.000
rrl	1474715	r.1058t>tcca	1.000
rrl	1474717	r.1060a>g	1.000
rrl	1474720	r.1063c>t	1.000
rrl	1474753	r.1096a>g	1.000
rrl	1474760	r.1103a>g	1.000
rrl	1474794	r.1137c>t	0.987
rrl	1474803	r.1146g>a	0.987
rrl	1474812	r.1155g>a	0.987
rrl	1474830	r.1173a>g	0.987
rrl	1474932	r.1275c>t	0.980
rrl	1475031	r.1374g>t	1.000
rrl	1475061	r.1404c>a	1.000
rrl	1475062	r.1405a>t	1.000
rrl	1475120	r.1463g>t	1.000
rrl	1475315	r.1658a>t	1.000
rrl	1475353	r.1696a>t	0.974
rrl	1475354	r.1697a>g	0.974
rrl	1475355	r.1698c>t	0.974
rrl	1475363	r.1706c>t	0.974
rrl	1475369	r.1712g>t	0.974
rrl	1475379	r.1722g>a	0.929
rrl	1475380	r.1723c>a	0.929
rrl	1475381	r.1724g>c	0.929
rrl	1475382	r.1725a>g	0.929
rrl	1475395	r.1738t>c	0.929
rrl	1475396	r.1739c>g	0.929
rrl	1475397	r.1740g>t	0.929
rrl	1475398	r.1741c>t	0.929
rrl	1475403	r.1746t>a	0.929
rrl	1475404	r.1747a>t	0.933
rrl	1475419	r.1762c>t	0.980
rrl	1475429	r.1772g>t	1.000
rrl	1475452	r.1795c>a	1.000
rrl	1475479	r.1822c>g	1.000
rrl	1475483	r.1826c>t	1.000
rrl	1475505	r.1848g>a	1.000
rrl	1475526	r.1869c>a	1.000
rrl	1475531	r.1874c>t	1.000
rrl	1475544	r.1887a>t	1.000
rrl	1475545	r.1888t>g	1.000
rrl	1475602	r.1945g>c	1.000
rrl	1475603	r.1946g>c	1.000
rrl	1475604	r.1947a>c	1.000
rrl	1475612	r.1955g>c	1.000
rrl	1475615	r.1958c>g	1.000
rrl	1475616	r.1959a>g	1.000
rrl	1475618	r.1961c>t	1.000
rrl	1475626	r.1969t>c	1.000
rrl	1475629	r.1972g>c	1.000
rrl	1475637	r.1980t>g	1.000
rrl	1475638	r.1981c>g	1.000
rrl	1475639	r.1982c>g	1.000
rrl	1475643	r.1986c>g	1.000
rrl	1475647	r.1990g>c	1.000
rrl	1475659	r.2002g>a	1.000
rrl	1475753	r.2096c>t	0.984
rrl	1475762	r.2105g>t	0.980
rrl	1475763	r.2106c>t	0.979
rrl	1475764	r.2107a>c	0.979
rrl	1475765	r.2108a>g	0.980
rrl	1475775	r.2118g>a	0.982
rrl	1475988	r.2331a>g	1.000
rrl	1475991	r.2334t>c	1.000
rrl	1475995	r.2338g>a	0.987
rrl	1476030	r.2373a>g	0.958
rrl	1476032	r.2375c>a	0.957
rrl	1476033	r.2376t>g	0.957
rrl	1476035	r.2378g>c	0.957
rrl	1476044	r.2387t>g	0.957
rrl	1476046	r.2389g>t	0.957
rrl	1476047	r.2390g>t	0.957
rrl	1476049	r.2392c>t	0.957
rrl	1476088	r.2431a>c	0.967
rrl	1476099	r.2442a>g	0.957
rrl	1476103	r.2446c>g	0.951
rrl	1476105	r.2448g>a	0.951
rrl	1476106	r.2449a>t	0.951
rrl	1476110	r.2453g>c	0.952
rrl	1476115	r.2458t>c	0.955
rrl	1476131	r.2474c>t	0.963
rrl	1476160	r.2503t>c	0.983
rrl	1476214	r.2557g>t	0.981
rrl	1476215	r.2558c>t	1.000
rrl	1476224	r.2567a>g	1.000
rrl	1476251	r.2594t>g	0.984
rrl	1476256	r.2599a>t	0.985
rrl	1476260	r.2603a>g	0.985
rrl	1476281	r.2624t>c	0.986
rrl	1476297	r.2640c>t	0.984
rrl	1476299	r.2642c>t	0.984
rrl	1476529	r.2872a>g	0.988
rrl	1476540	r.2883c>t	0.988
rrl	1476583	r.2926g>a	1.000
rrl	1476584	r.2927c>t	1.000
rrl	1476594	r.2937c>t	1.000
rrl	1476597	r.2940g>a	1.000
rrl	1476603	r.2946g>a	1.000
rrl	1476628	r.2971t>a	1.000
rrl	1476664	r.3007t>c	0.982
rrl	1476665	r.3008t>c	0.982
rrl	1476674	r.3017t>c	0.982
rrl	1476679	r.3022t>c	0.980
rrl	1476689	r.3032a>t	0.977
rrl	1476690	r.3033c>t	0.977
rrl	1476693	r.3036g>a	0.977
rrl	1476695	r.3038t>a	0.977
rrl	1476716	r.3059a>c	0.975
rrl	1476723	r.3066t>a	0.929
rrl	1476725	r.3068c>t	0.929
rrl	1476726	r.3069a>g	0.929
rrl	1476731	r.3074g>a	0.929
rrl	1476732	r.3075t>c	0.929
rrl	1476746	r.3089t>c	0.923
rrl	1476747	r.3090c>t	0.923
rrl	1476754	r.3097g>a	0.923
rrl	1476759	r.3102t>c	0.923
rrl	1476770	r.3113t>c	0.909
rrl	1476771	r.3114g>a	0.909
fabG1	1673703	c.264C>T	0.923
fabG1	1673724	c.285A>G	0.923
fabG1	1673730	c.291C>G	0.923
fabG1	1673745	c.306G>A	0.923
fabG1	1673748	c.309A>G	0.923
fabG1	1673749	p.Lys104Arg	0.923
fabG1	1673760	p.Lys107Asn	0.857
fabG1	1673778	c.339C>G	0.857
fabG1	1673784	c.345G>C	0.923
fabG1	1673787	c.348G>C	0.923
fabG1	1673886	c.447C>T	0.833
fabG1	1673901	c.462A>G	0.783
fabG1	1673905	p.Ser156Ala	0.826
fabG1	1673916	c.477A>C	0.840
fabG1	1673917	p.Val160Leu	0.840
fabG1	1673922	c.483T>C	0.840
fabG1	1673931	c.492C>G	0.846
fabG1	1673941	p.Ala168Ser	0.846
fabG1	1673955	c.516G>C	0.846
fabG1	1673961	c.522A>C	0.815
fabG1	1673962	p.Asn175Gly	0.815
fabG1	1673967	c.528G>C	0.815
fabG1	1673973	c.534G>C	0.821
fabG1	1673976	c.537T>C	0.828
fabG1	1674006	p.Asp189Glu	0.900
fabG1	1674024	c.585T>C	0.929
fabG1	1674037	p.Gln200Ala	0.895
fabG1	1674042	c.603G>C	0.882
fabG1	1674045	c.606G>C	0.882
fabG1	1674049	p.Gln204Asp	0.882
fabG1	1674054	c.615T>C	0.938
fabG1	1674060	c.621A>C	0.938
fabG1	1674079	p.Pro214Ala	0.923
fabG1	1674083	p.Ala215Glu	0.815
fabG1	1674096	c.657G>C	0.895
fabG1	1674098	p.Val220Ala	0.895
fabG1	1674102	c.663C>G	0.895
fabG1	1674114	c.675T>A	1.000
inhA	1674651	c.450C>T	1.000
inhA	1674656	p.Ser152Thr	1.000
inhA	1674660	c.459G>C	1.000
inhA	1674663	c.462G>C	1.000
inhA	1674672	c.471C>A	1.000
inhA	1674690	c.489C>G	1.000
inhA	1674702	c.501G>T	1.000
inhA	1674703	c.502T>C	1.000
inhA	1674718	c.517A>C	1.000
inhA	1674729	c.528G>T	1.000
inhA	1674742	p.Lys181Ala	1.000
inhA	1674745	p.Tyr182Ala	1.000
inhA	1674753	c.552G>C	1.000
inhA	1674876	c.675C>T	1.000
inhA	1674879	c.678T>G	1.000
inhA	1674904	p.Ala235Pro	0.952
inhA	1674924	c.723G>T	0.952
inhA	1674930	c.729C>T	0.947
inhA	1674934	c.733C>T	0.941
inhA	1674942	c.741T>C	0.941
inhA	1674949	p.Leu250Met	0.923
inhA	1674954	c.753G>C	0.909
inhA	1674957	c.756G>C	0.909
inhA	1674963	c.762G>A	0.909
inhA	1674966	c.765T>C	0.909
inhA	1674967	p.Asp256Thr	0.909
rpsA	1833547	c.6G>A	0.938
rpsA	1833554	p.Thr5Ser	0.941
rpsA	1833589	c.48A>C	0.955
rpsA	1833595	c.54T>G	0.955
rpsA	1833596	p.Ser19Ala	0.955
rpsA	1833616	c.75A>C	0.966
rpsA	1833619	c.78A>C	0.968
rpsA	1833628	c.87G>C	0.970
rpsA	1833634	c.93G>A	1.000
rpsA	1833661	c.120A>G	1.000
rpsA	1833664	c.123C>A	1.000
rpsA	1833676	c.135A>G	1.000
rpsA	1833679	c.138G>T	1.000
rpsA	1833685	c.144G>T	1.000
rpsA	1833694	c.153G>C	0.946
rpsA	1833697	c.156C>G	0.944
rpsA	1833703	c.162C>T	0.946
rpsA	1833724	c.183C>T	0.939
rpsA	1833727	c.186G>C	0.938
rpsA	1833730	c.189C>T	0.938
rpsA	1833733	c.192C>T	0.938
rpsA	1833734	p.Ala65Ser	0.938
rpsA	1833745	c.204G>C	0.952
rpsA	1833760	c.219C>T	0.956
rpsA	1833787	c.246C>G	0.957
rpsA	1833790	c.249T>C	0.939
rpsA	1833793	c.252C>T	0.939
rpsA	1833802	c.261A>G	0.943
rpsA	1833811	c.270G>T	0.941
rpsA	1833829	c.288A>G	0.941
rpsA	1833832	c.291G>A	0.940
rpsA	1833838	c.297G>C	0.939
rpsA	1833841	c.300C>G	0.939
rpsA	1833847	c.306C>G	0.981
rpsA	1833856	c.315A>G	0.981
rpsA	1833862	c.321G>T	0.982
rpsA	1833894	p.Ala118Glu	0.984
rpsA	1833904	c.363G>A	0.983
rpsA	1833928	c.387G>C	0.983
rpsA	1833949	c.408T>C	0.982
rpsA	1833970	c.429G>T	0.980
rpsA	1833976	c.435C>T	0.980
rpsA	1833979	c.438T>C	0.979
rpsA	1833991	c.450C>A	0.960
rpsA	1834000	c.459G>C	0.979
rpsA	1834009	c.468C>T	0.977
rpsA	1834012	c.471G>T	0.976
rpsA	1834015	c.474G>C	0.977
rpsA	1834021	c.480C>T	0.978
rpsA	1834030	c.489C>G	0.974
rpsA	1834097	c.556T>A	1.000
rpsA	1834102	c.561T>C	1.000
rpsA	1834150	c.609G>C	0.963
rpsA	1834153	c.612T>C	0.962
rpsA	1834154	p.Asn205Gln	0.962
rpsA	1834157	c.616T>C	0.962
rpsA	1834162	c.621A>G	0.962
rpsA	1834165	c.624A>G	0.962
rpsA	1834169	p.Thr210Ala	0.962
rpsA	1834177	c.636A>C	1.000
rpsA	1834189	c.648G>C	0.977
rpsA	1834213	c.672G>C	0.978
rpsA	1834234	c.693G>C	0.978
rpsA	1834240	c.699T>C	0.976
rpsA	1834246	c.705G>C	0.950
rpsA	1834249	c.708T>C	0.947
rpsA	1834252	c.711C>G	0.925
rpsA	1834261	c.720A>G	0.938
rpsA	1834264	c.723G>C	0.939
rpsA	1834279	c.738C>T	0.940
rpsA	1834297	c.756C>T	0.942
rpsA	1834303	c.762T>G	0.938
rpsA	1834306	c.765T>C	0.939
rpsA	1834345	c.804C>T	0.918
rpsA	1834348	c.807T>C	0.923
rpsA	1834361	c.820T>C	0.923
rpsA	1834366	c.825A>G	0.938
rpsA	1834396	c.855G>C	0.959
rpsA	1834411	c.870T>C	0.980
rpsA	1834423	c.882G>T	0.980
rpsA	1834451	c.910T>C	0.980
rpsA	1834456	c.915T>G	0.979
rpsA	1834468	c.927A>G	0.980
rpsA	1834489	c.948T>C	0.981
rpsA	1834498	c.957C>T	0.961
rpsA	1834513	c.972C>G	0.959
rpsA	1834520	p.Ala327Ser	0.962
rpsA	1834528	c.987T>C	0.960
rpsA	1834540	c.999G>C	0.968
rpsA	1834543	c.1002C>G	0.968
rpsA	1834546	c.1005T>C	0.968
rpsA	1834606	c.1065C>T	0.972
rpsA	1834609	c.1068T>C	0.971
rpsA	1834619	c.1078T>C	0.962
rpsA	1834622	c.1081T>A	0.962
rpsA	1834633	c.1092A>G	0.976
rpsA	1834639	c.1098T>C	0.977
rpsA	1834666	c.1125G>C	0.933
rpsA	1834667	p.Ala376Ser	0.933
rpsA	1834690	c.1149T>C	0.942
rpsA	1834732	c.1191T>C	0.922
rpsA	1834738	c.1197A>G	0.941
rpsA	1834753	c.1212T>C	0.930
rpsA	1834756	c.1215G>A	0.930
rpsA	1834759	c.1218A>C	0.930
rpsA	1834765	p.Glu408Asp	0.909
rpsA	1834774	c.1233C>G	0.846
rpsA	1834776	p.Ala412Glu	0.846
rpsA	1834780	c.1239A>G	0.846
rpsA	1834786	c.1245A>G	0.852
rpsA	1834789	c.1248T>C	0.862
rpsA	1834792	c.1251G>C	0.862
rpsA	1834829	p.Ala430Thr	0.893
rpsA	1834852	c.1311C>G	0.818
katG	2155661	p.Val151Leu	0.958
katG	2155668	c.444C>G	0.958
katG	2155674	c.438C>G	0.958
katG	2155680	c.432C>T	0.958
katG	2155691	c.421A>G	0.958
katG	2155696	p.Ala139Val	0.958
katG	2155716	c.396A>C	0.958
katG	2155722	c.390C>G	0.958
katG	2155728	c.384C>G	0.958
katG	2155742	p.Gly124Arg	0.933
katG	2155747	p.Ala122Gly	0.923
katG	2155749	c.363G>A	0.900
katG	2155752	c.360G>A	0.900
kasA	2518726	c.612G>A	1.000
kasA	2518732	c.618C>G	1.000
kasA	2518747	c.633C>G	1.000
kasA	2518756	c.642G>C	0.964
kasA	2518780	p.Glu222Asp	0.967
kasA	2518783	c.669T>C	0.967
kasA	2518785	p.Glu224Ala	0.967
kasA	2518787	p.Arg225Gly	0.967
kasA	2518792	c.678C>G	0.967
kasA	2518795	c.681C>T	0.967
kasA	2518813	c.699C>T	0.975
kasA	2518816	c.702C>T	0.976
kasA	2518825	c.711T>C	0.957
kasA	2518843	c.729T>C	0.911
kasA	2518847	p.Leu245Met	0.923
kasA	2518853	p.Leu247Ile	0.919
kasA	2518864	c.750G>C	0.882
kasA	2518877	p.Lys255Leu	0.833
kasA	2518898	c.784T>C	0.818
kasA	2518903	c.789C>T	0.833
kasA	2518906	c.792A>G	0.833
kasA	2518907	c.793T>C	0.833
kasA	2518910	p.Leu266Met	0.833
thyX	3067305	p.Glu214Ala	0.400
thyX	3067310	c.636G>T	0.500
thyX	3067319	c.627C>G	0.760
thyX	3067325	c.621T>C	0.786
thyX	3067331	c.615G>A	0.793
thyX	3067334	c.612G>T	0.800
thyX	3067340	c.606C>T	0.829
thyX	3067346	c.600G>C	0.806
thyX	3067349	c.597C>G	0.838
thyX	3067355	c.591T>C	0.857
thyX	3067376	c.570C>G	0.933
thyX	3067406	c.540T>C	0.932
thyX	3067415	c.531G>A	0.932
thyX	3067423	c.523G>A	0.909
thyX	3067424	c.522C>T	0.909
thyX	3067427	c.519C>G	0.909
thyX	3067430	c.516G>C	0.909
thyX	3067436	c.510G>C	0.968
thyX	3067442	c.504G>C	1.000
thyX	3067457	c.489G>A	1.000
thyX	3067465	p.Ile161Val	1.000
thyX	3067466	c.480C>G	1.000
thyX	3067475	c.471T>C	1.000
embC	4240717	c.855T>C	0.956
embC	4240777	c.915G>A	0.983
embC	4240780	c.918T>C	0.982
embC	4240783	c.921G>C	0.982
embC	4240789	c.927T>C	0.982
embC	4240819	c.957A>C	0.957
embC	4240828	c.966G>A	0.955
embC	4240831	c.969T>G	0.976
embC	4241533	c.1671T>C	0.545
embC	4241536	c.1674A>C	0.600
embC	4241539	c.1677T>C	0.636
embC	4241545	c.1683T>G	0.600
embC	4241548	c.1686T>A	0.636
embC	4241551	c.1689A>C	0.692
embC	4241560	c.1698C>G	0.886
embC	4241584	c.1722T>C	0.919
embC	4241587	c.1725C>G	0.919
embC	4241593	c.1731C>G	0.944
embC	4241611	c.1749G>C	0.944
embC	4241614	c.1752A>C	0.944
embC	4241626	c.1764T>C	0.944
embC	4241635	c.1773G>C	0.971
embC	4241644	c.1782G>C	0.938
embC	4241647	c.1785G>A	0.929
embC	4241648	c.1786T>C	0.929
embC	4241656	c.1794G>A	0.929
embC	4241659	c.1797G>C	0.929
embC	4241665	c.1803G>T	0.917
embC	4241668	c.1806G>C	0.917
embC	4241671	c.1809T>G	0.917
embC	4241750	p.Leu630Met	0.958
embC	4241756	c.1894C>T	0.958
embC	4241767	c.1905C>G	0.958
embC	4241769	p.Ser636Thr	0.958
embC	4241809	c.1947A>C	0.920
embC	4242826	c.2964G>C	0.923
embC	4242832	c.2970A>G	0.923
embC	4242838	c.2976C>G	0.857
embC	4242841	c.2979C>T	0.857
embC	4242844	c.2982A>G	0.857
embC	4242847	c.2985C>G	0.857
embC	4242859	c.2997C>T	0.857
embC	4242862	c.3000A>G	0.857
embC	4242872	p.Asp1004Thr	0.857
embC	4242878	p.Thr1006Val	0.857
embC	4242907	c.3045G>C	0.800
embC	4242919	c.3057A>G	0.800
embC	4242928	c.3066A>G	0.800
embA	4244645	c.1413T>C	0.957
embA	4244648	c.1416G>C	0.957
embA	4244665	p.Thr478Ser	0.958
embA	4244669	c.1437G>C	0.958
embA	4244681	c.1449A>C	0.958
embA	4244684	c.1452C>G	1.000
embA	4244695	p.Lys488Thr	1.000
embA	4244712	p.Ala494Ser	1.000
embA	4244726	p.Asp498Glu	1.000
embA	4244747	c.1515T>G	1.000
embA	4245042	p.Thr604Ala	0.968
embA	4245053	c.1821G>C	0.968
embA	4245060	c.1828T>C	0.968
embA	4245071	c.1839G>C	0.938
embA	4245077	c.1845G>T	0.938
embA	4245083	c.1851A>C	0.938
embA	4245092	c.1860C>G	0.938
embA	4245094	p.Ile621Thr	0.938
embA	4245101	c.1869G>C	0.938
embA	4245125	c.1893G>C	0.938
embA	4245431	c.2199T>C	1.000
embA	4245454	p.Ala741Val	1.000
embA	4245459	p.Pro743Ala	1.000
embA	4245465	p.Pro745Thr	1.000
embB	4247389	c.876C>G	0.867
embB	4247398	c.885G>C	0.875
embB	4247401	c.888T>C	0.875
embB	4247407	c.894G>C	0.875
embB	4247426	p.Gly305Gln	0.889
embB	4247434	c.921C>G	0.889
embB	4247437	c.924A>C	0.889
embB	4247440	c.927C>G	0.900
embB	4247449	c.936C>T	0.935
embB	4247464	c.951C>G	0.944
embB	4247470	c.957T>C	0.946
embB	4247491	c.978G>C	1.000
embB	4247497	c.984T>C	1.000
embB	4247511	p.Tyr333Phe	1.000
embB	4247527	c.1014G>C	1.000
embB	4247536	c.1023C>G	0.977
embB	4247554	c.1041T>C	0.967
embB	4247555	p.Leu348Ile	0.967
embB	4247566	c.1053C>A	0.967
embB	4247572	c.1059A>C	0.967
embB	4247590	c.1077A>G	0.962
embB	4247629	c.1116C>G	0.955
embB	4247638	c.1125G>C	0.944
embB	4248199	c.1686A>G	1.000
embB	4248200	p.Ile563Val	1.000
embB	4248206	p.Ser565Gly	1.000
embB	4248220	c.1707A>G	1.000
embB	4248225	p.Ala571Val	1.000
embB	4248233	c.1720C>T	1.000
embB	4248242	p.Val577Ile	1.000
embB	4248252	p.Gly580Ala	1.000
embB	4248264	p.Phe584Cys	0.980
embB	4248277	c.1764G>C	0.981
embB	4248304	c.1791G>C	1.000
embB	4248319	c.1806A>G	1.000
embB	4248322	c.1809G>T	0.969