Run ID: ERR1193643
Sample name:
Date: 15-08-2022 10:01:20
Number of reads: 7990914
Percentage reads mapped: 85.59
Strain: lineage4.3.4.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620056 | p.Thr56Ala | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416222 | p.Phe376Leu | missense_variant | 0.14 |
embR | 1416232 | p.Cys372Gly | missense_variant | 0.15 |
embR | 1416259 | c.1089G>C | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472349 | n.504A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472374 | n.529T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472827 | n.982G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154203 | p.Asn637His | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290021 | c.-780C>T | upstream_gene_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.17 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
rpoA | 3878601 | c.-94C>G | upstream_gene_variant | 0.2 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4239763 | c.-100C>T | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338334 | p.Ala63Glu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |