Run ID: ERR1633840
Sample name:
Date: 18-08-2022 14:46:49
Number of reads: 779430
Percentage reads mapped: 99.49
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.97 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.97 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6326 | p.Ser363Gly | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576425 | p.Val360Met | missense_variant | 0.14 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763102 | p.Ala1099Glu | missense_variant | 0.14 |
rpoC | 765331 | p.Ser654Arg | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416659 | p.Arg230Gln | missense_variant | 0.17 |
atpE | 1460871 | c.-173delG | upstream_gene_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475821 | n.2164T>A | non_coding_transcript_exon_variant | 0.17 |
rpsA | 1833422 | c.-120G>A | upstream_gene_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2288987 | c.255G>T | synonymous_variant | 0.14 |
pncA | 2288999 | c.243C>T | synonymous_variant | 0.13 |
pncA | 2289863 | c.-622G>T | upstream_gene_variant | 0.13 |
pepQ | 2859573 | c.846C>A | synonymous_variant | 0.15 |
ribD | 2987173 | p.Ser112Ile | missense_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339221 | p.Arg35His | missense_variant | 0.13 |
fbiD | 3339399 | c.282C>T | synonymous_variant | 0.13 |
fbiB | 3641588 | c.54C>T | synonymous_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243418 | c.186G>T | synonymous_variant | 0.18 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4246567 | c.54G>T | synonymous_variant | 1.0 |
embB | 4248879 | p.Thr789Lys | missense_variant | 0.15 |
ubiA | 4269410 | p.Leu142Phe | missense_variant | 0.14 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407788 | p.Val139Leu | missense_variant | 0.11 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4408306 | c.-104C>T | upstream_gene_variant | 0.15 |