TB-Profiler result

Run: ERR4815107
Summary

Run ID: ERR4815107

Sample name:

Date: 01-04-2023 13:40:33

Number of reads: 3955562

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474048 n.391G>A non_coding_transcript_exon_variant 0.25
rrl 1474668 n.1011G>A non_coding_transcript_exon_variant 0.29
rrl 1475623 n.1966C>T non_coding_transcript_exon_variant 0.11
embB 4249740 p.Ala1076Val missense_variant 0.12