TB-Profiler result

Run: SRR1723586_SRR1723585
Summary

Run ID: SRR1723586_SRR1723585

Sample name:

Date: 28-10-2022 12:13:20

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage2.2.1

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761110 p.Asp435Val missense_variant 1.0 rifampicin
rpsL 781822 p.Lys88Arg missense_variant 1.0 streptomycin
ahpC 2726141 c.-52C>T upstream_gene_variant 0.99 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 767314 p.Tyr1315* stop_gained 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1304051 p.Leu374Ser missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155139 p.Pro325Ser missense_variant 1.0
katG 2155618 p.Ile165Thr missense_variant 1.0
katG 2156389 c.-279dupT upstream_gene_variant 1.0
thyX 3067439 p.Gln169His missense_variant 0.17
ald 3086788 c.-32T>C upstream_gene_variant 1.0
embC 4239842 c.-21C>A upstream_gene_variant 0.25
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embA 4245838 p.Val869Gly missense_variant 0.14
embB 4247746 c.1233C>T synonymous_variant 1.0
ubiA 4269529 p.Ala102Gly missense_variant 0.22
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0