Run ID: SRR1723905_SRR1723904
Sample name:
Date: 28-10-2022 12:13:31
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.5
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781822 | p.Lys88Arg | missense_variant | 0.57 | streptomycin |
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 0.15 | streptomycin |
katG | 2155805 | c.306delT | frameshift_variant | 0.81 | isoniazid |
ahpC | 2726136 | c.-57C>T | upstream_gene_variant | 0.93 | isoniazid |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
ethA | 4326046 | c.1415_1427delAGATCGACGACGA | frameshift_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
rpoB | 762310 | p.His835Arg | missense_variant | 0.15 |
rpoC | 764821 | p.Trp484Cys | missense_variant | 0.14 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154588 | p.Asn508Lys | missense_variant | 0.12 |
thyA | 3074465 | p.Pro3Ala | missense_variant | 0.2 |
embC | 4241429 | p.Phe523Val | missense_variant | 0.2 |
embC | 4242098 | p.Gly746Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.18 |