TB-Profiler result

Run: SRR5485450
Summary

Run ID: SRR5485450

Sample name:

Date: 18-08-2022 08:31:08

Number of reads: 129522

Percentage reads mapped: 99.35

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.2
rrs 1472303 n.458G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.22
katG 2155337 p.Asp259Asn missense_variant 0.18
pncA 2289226 p.Ile6Val missense_variant 0.17
pncA 2289262 c.-21G>A upstream_gene_variant 0.17