lineage | Count |
---|---|
lineage3.1.2 | 5 |
lineage4.1.1 | 11 |
lineage3 | 7 |
lineage4.6.3 | 3 |
lineage4.8 | 11 |
lineage4.2.2.2 | 2 |
lineage4.6.1.1 | 6 |
lineage9 | 1 |
lineage2.2.1.1 | 1 |
lineage7 | 10 |
lineage2.2.1 | 8 |
lineage4.1.2 | 2 |
lineage3.1.1 | 13 |
lineage4.3.4.2.1 | 11 |
lineage4.9 | 4 |
lineage4.2.1 | 1 |
lineage4.3.4.1 | 1 |
lineage4.3.4.2.1;lineage4.3.4.1 | 1 |
lineage4.4.1.1 | 4 |
lineage4.1.1.3 | 5 |
lineage4.7 | 1 |
lineage4.9.1 | 2 |
lineage4.1.2.1 | 7 |
lineage6 | 1 |
lineage4.6.1.2 | 2 |
lineage4.6 | 1 |
lineage5.1.1 | 1 |
lineage4.3.4.2.1;lineage1.1.3 | 1 |
lineage4.8.2 | 6 |
La1.8.1 | 1 |
lineage4.1.1.3.1 | 14 |
lineage4.6.2.1 | 1 |
lineage4.1.4 | 1 |
lineage4.3.3 | 3 |
lineage5.1.3 | 1 |
lineage4.3.1.1 | 1 |
lineage2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 152 |
ID | Drug resistance | Lineage | Country iso2 | SRR2100076 | Sensitive | lineage3.1.2 | None | SRR2100093 | Sensitive | lineage4.1.1 | None | SRR2100070 | Sensitive | lineage4.1.1 | None | SRR2100080 | Sensitive | lineage3.1.2 | None | SRR2100075 | Sensitive | lineage3 | None | ERR233348 | Sensitive | lineage4.6.3 | et | SRR2100103 | Sensitive | lineage4.8 | None | ERR1200620 | MDR-TB | lineage4.2.2.2 | et | ERR1199061 | Sensitive | lineage4.6.1.1 | ug | ERR1199041 | Sensitive | lineage4.6.1.1 | None | ERR181315 | MDR-TB | lineage9 | so | ERR233361 | Sensitive | lineage2.2.1.1 | None | ERR1199034 | Sensitive | lineage4.6.1.1 | ug | ERR1200639 | Sensitive | lineage7 | et | ERR234126 | Sensitive | lineage2.2.1 | cn | ERR841397 | Sensitive | lineage4.8 | rs | ERR1199055 | Sensitive | lineage4.6.1.1 | ug | ERR841404 | Sensitive | lineage4.1.2 | ch | ERR1200630 | Sensitive | lineage3.1.1 | et | ERR234138 | Sensitive | lineage2.2.1 | cn | ERR234128 | Sensitive | lineage2.2.1 | cn | ERR245789 | Sensitive | lineage3.1.1 | mw | ERR1200612 | Sensitive | lineage7 | et | ERR245779 | Sensitive | lineage4.3.4.2.1 | mw | ERR245785 | Sensitive | lineage4.9 | mw | ERR1200605 | Other | lineage4.2.1 | et | ERR1200614 | Sensitive | lineage4.6.3 | et | ERR245778 | Sensitive | lineage4.3.4.2.1 | mw | ERR245796 | Sensitive | lineage3.1.1 | mw | ERR245799 | Sensitive | lineage4.3.4.1 | mw | ERR245806 | Sensitive | lineage4.8 | mw | ERR245797 | Sensitive | lineage4.3.4.2.1;lineage4.3.4.1 | mw | ERR245803 | Sensitive | lineage3.1.1 | mw | ERR245800 | Sensitive | lineage4.4.1.1 | mw | ERR245804 | Sensitive | lineage4.1.1.3 | mw | ERR245807 | Sensitive | lineage4.7 | mw | ERR245801 | Other | lineage4.3.4.2.1 | None | ERR245815 | Sensitive | lineage4.3.4.2.1 | None | ERR245839 | Sensitive | lineage3.1.1 | mw | ERR245824 | Sensitive | lineage4.3.4.2.1 | None | ERR245848 | Sensitive | lineage4.3.4.2.1 | mw | ERR245838 | HR-TB | lineage3.1.1 | mw | ERR245837 | Sensitive | lineage2.2.1 | mw | ERR245840 | Sensitive | lineage3.1.1 | mw | ERR245845 | Sensitive | lineage4.9.1 | mw | ERR245847 | Sensitive | lineage4.9.1 | mw | ERR245842 | Sensitive | lineage4.1.1.3 | mw | SRR413216 | MDR-TB | lineage2.2.1 | None | ERR245849 | Other | lineage3 | mw | ERR1200635 | Sensitive | lineage7 | et | ERR1200636 | Other | lineage7 | et | ERR464772 | Sensitive | lineage4.4.1.1 | ch | ERR233358 | RR-TB | lineage4.1.2.1 | mx | ERR233354 | Sensitive | lineage7 | None | ERR1200625 | Sensitive | lineage7 | et | ERR1200615 | Sensitive | lineage4.8 | et | ERR2516454 | MDR-TB | lineage4.1.2.1 | None | ERR1200634 | Sensitive | lineage7 | et | ERR1200607 | HR-TB | lineage3 | et | ERR1199022 | Sensitive | lineage4.6.1.1 | ug | ERR1200616 | Sensitive | lineage4.1.2.1 | et | ERR233352 | Sensitive | lineage4.1.2.1 | None | ERR233350 | MDR-TB | lineage4.2.2.2 | et | ERR1200610 | Sensitive | lineage7 | et | ERR233366 | Sensitive | lineage6 | None | ERR1200623 | Sensitive | lineage7 | et | ERR036194 | Other | lineage4.6.1.2 | None | ERR841416 | Sensitive | lineage4.9 | None | SRR671747 | Sensitive | lineage2.2.1 | cn | ERR1200621 | Sensitive | lineage4.6 | et | ERR1200633 | Sensitive | lineage7 | et | ERR025425 | Other | lineage4.1.2 | None | ERR036204 | Sensitive | lineage4.8 | mw | ERR1199051 | Sensitive | lineage4.6.1.2 | ug | ERR464769 | Sensitive | lineage4.4.1.1 | ch | ERR2181457 | MDR-TB | lineage5.1.1 | gh | ERR1200611 | Other | lineage4.6.3 | et | SRR671836 | HR-TB | lineage2.2.1 | cn | ERR1199046 | Sensitive | lineage4.6.1.1 | ug | ERR036207 | Other | lineage4.9 | None | ERR036210 | Sensitive | lineage3.1.1 | mw | ERR036224 | HR-TB | lineage4.3.4.2.1;lineage1.1.3 | None | ERR036237 | Sensitive | lineage4.3.4.2.1 | None | ERR046740 | Sensitive | lineage4.1.1 | None | ERR036247 | Sensitive | lineage4.3.4.2.1 | mw | ERR037474 | Sensitive | lineage4.3.4.2.1 | mw | ERR046736 | Sensitive | lineage4.1.1 | gb | ERR037480 | Sensitive | lineage4.3.4.2.1 | mw | ERR046741 | Sensitive | lineage4.1.1 | gb | ERR046738 | Sensitive | lineage4.1.1 | gb | ERR046752 | Sensitive | lineage4.8.2 | gb | ERR046739 | Sensitive | lineage4.1.1 | gb | ERR046758 | Sensitive | lineage4.8.2 | gb | ERR046770 | Sensitive | lineage3.1.1 | gb | ERR046749 | Other | La1.8.1 | gb | ERR046762 | Sensitive | lineage4.8.2 | gb | ERR046763 | Sensitive | lineage4.8.2 | gb | ERR046764 | Sensitive | lineage4.8.2 | gb | ERR046769 | Sensitive | lineage3.1.1 | gb | ERR046772 | Sensitive | lineage3.1.1 | gb | ERR046783 | Sensitive | lineage4.1.1.3.1 | gb | ERR046786 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046785 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046780 | HR-TB | lineage3 | gb | ERR046792 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046787 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046796 | Pre-XDR-TB | lineage4.8 | gb | ERR046802 | Sensitive | lineage3.1.2 | None | ERR046795 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046798 | Sensitive | lineage4.1.1.3.1 | gb | ERR046801 | Sensitive | lineage3 | None | ERR046800 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046799 | Sensitive | lineage4.1.1.3.1 | gb | ERR046810 | Sensitive | lineage3.1.2 | None | ERR046825 | RR-TB | lineage4.1.1 | gb | ERR046808 | Sensitive | lineage3 | None | ERR046838 | Sensitive | lineage4.6.2.1 | gb | ERR046830 | Sensitive | lineage3.1.2 | None | ERR046851 | Sensitive | lineage4.1.1.3.1 | gb | ERR046852 | Sensitive | lineage4.1.1.3.1 | gb | ERR046859 | Sensitive | lineage4.1.1.3 | gb | ERR046857 | Sensitive | lineage3.1.1 | gb | ERR046872 | Sensitive | lineage4.1.2.1 | gb | ERR046862 | Sensitive | lineage3 | gb | ERR046866 | Sensitive | lineage3.1.1 | gb | ERR046871 | Sensitive | lineage4.3.4.2.1 | gb | ERR046864 | Sensitive | lineage4.1.4 | gb | ERR046869 | Sensitive | lineage4.1.1.3 | gb | ERR046887 | Sensitive | lineage4.3.3 | gb | ERR046874 | Sensitive | lineage4.1.2.1 | gb | ERR046894 | Sensitive | lineage4.3.3 | gb | ERR046897 | Sensitive | lineage4.4.1.1 | gb | ERR046890 | Sensitive | lineage4.8 | gb | ERR046932 | Sensitive | lineage4.8 | gb | ERR046909 | Sensitive | lineage4.9 | None | ERR046920 | Sensitive | lineage4.8.2 | gb | ERR046916 | Sensitive | lineage4.1.1 | gb | ERR046919 | Sensitive | lineage4.1.1.3.1 | gb | ERR046931 | Sensitive | lineage4.1.1 | None | ERR046902 | Sensitive | lineage4.1.1.3 | None | ERR046903 | Pre-XDR-TB | lineage4.8 | gb | ERR046904 | Sensitive | lineage4.1.1.3.1 | gb | ERR046917 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046918 | RR-TB | lineage5.1.3 | gb | ERR046993 | Sensitive | lineage4.1.2.1 | gb | ERR046998 | Sensitive | lineage4.8 | gb | ERR047012 | Sensitive | lineage4.3.1.1 | gb | ERR047014 | Sensitive | lineage4.3.3 | gb | ERR047015 | Sensitive | lineage4.8 | None | ERR046971 | Sensitive | lineage4.1.1 | gb | ERR047003 | Sensitive | lineage2.2.1 | gb | SRR125298 | HR-TB | lineage2.2.2 | None |
---|