TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5d9ef3a1b97af
Sample: 5d9ef3a1b97af

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Summary
ID: 5d9ef3a1b97af
Date: Thu Oct 10 10:04:11 2019
Strain: lineage4.3;lineage1.1.1
Drug-resistance: Drug-resistant

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkatG c.298 299insTG (1.00)
Rifampicin
EthambutolRembB p.His312Arg (1.00), embB p.Leu359Ile (1.00), embB p.Ala388Gly (1.00), embB p.Asn399Asp (1.00), embB p.Ala659Thr (1.00)
Pyrazinamide
StreptomycinRrrs r.462c>t (1.00)
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage1.1.1Indo-OceanicEAI4;EAI5RD239

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB5772p.Ala178Asp1.000
gyrB5774p.Val179Ile1.000
gyrB5782c.543A>G1.000
gyrB5788c.549G>C1.000
gyrB5791c.552A>G1.000
gyrB5806c.567C>G1.000
gyrB5809c.570C>G1.000
gyrB5815c.576C>G1.000
gyrB5824c.585A>G1.000
gyrB5827c.588G>A1.000
gyrB5848c.609G>C1.000
gyrB5863c.624G>C1.000
gyrB5873c.634A>C1.000
gyrB5882p.Gln215Asn1.000
gyrB5887p.Asp216Glu1.000
gyrB5902c.663A>G1.000
gyrB6086p.Thr283Pro1.000
gyrB6091c.852G>C1.000
gyrB6100c.861G>C1.000
gyrB6115c.876A>G1.000
gyrB6123p.Ala295Gly1.000
gyrB6127c.888G>C1.000
gyrB6133c.894G>C1.000
gyrB6136c.897G>A1.000
gyrB6148c.909C>G1.000
gyrB6169c.930C>G1.000
gyrB6190c.951A>G1.000
gyrB6209c.970C>T1.000
gyrB6214c.975G>C1.000
gyrB6217c.978G>C1.000
gyrB6223c.984G>C1.000
gyrB6242p.Arg335Lys1.000
gyrB6250c.1011A>G1.000
gyrB6253c.1014G>C1.000
gyrB6280c.1041T>C1.000
gyrB6286c.1047T>C1.000
gyrB6292c.1053G>C1.000
gyrB6295c.1056A>G1.000
gyrB6298c.1059C>T1.000
gyrB6299c.1060C>T1.000
gyrB6307c.1068T>G1.000
gyrB6319c.1080G>C1.000
gyrB6325c.1086C>G1.000
gyrB6361c.1122G>A1.000
gyrB6362c.1123T>C1.000
gyrB6379c.1140C>G1.000
gyrB6382c.1143A>G1.000
gyrB6388c.1149T>C1.000
gyrB6400c.1161C>G1.000
gyrB6403c.1164T>C1.000
gyrB6415c.1176G>C1.000
gyrB6427c.1188T>C1.000
gyrB6440p.Thr401Ala1.000
gyrB6448c.1209G>C1.000
gyrB6455p.Val406Ile1.000
gyrB6460c.1221G>C1.000
gyrB6565c.1326G>C1.000
gyrB6571c.1332T>C1.000
gyrB6577c.1338T>C1.000
gyrB6580c.1341C>G1.000
gyrB6583c.1344G>C1.000
gyrB6586c.1347T>C1.000
gyrB6598c.1359C>G1.000
gyrB6602c.1363C>T1.000
gyrB6610c.1371C>G1.000
gyrB6613c.1374A>C1.000
gyrB6616c.1377A>G1.000
gyrB6634c.1395T>C1.000
gyrB6637c.1398T>G1.000
gyrB6640c.1401A>G1.000
gyrB6649c.1410T>C1.000
gyrB6652c.1413C>G1.000
gyrB6655c.1416T>C1.000
gyrB6670c.1431G>C1.000
gyrB6673c.1434A>C0.974
gyrB6700c.1461T>C1.000
gyrB6703c.1464G>C1.000
gyrB6706c.1467G>A1.000
gyrB6709c.1470A>G1.000
gyrB6712c.1473G>C1.000
gyrB6727c.1488G>T1.000
gyrB6730c.1491A>G1.000
gyrB6745c.1506T>G1.000
gyrB6760c.1521G>C1.000
gyrB6778c.1539C>T1.000
gyrB6793c.1554T>C1.000
gyrB6797p.Gly520Thr1.000
gyrB6824c.1585C>T1.000
gyrB6841c.1602T>C1.000
gyrB6844c.1605T>G1.000
gyrB6853c.1614A>G1.000
gyrB6856c.1617T>C1.000
gyrB6859c.1620T>C1.000
gyrB6862c.1623C>G1.000
gyrB6878c.1639T>C1.000
gyrB6881c.1642T>C1.000
gyrB6904c.1665C>G1.000
gyrB6910c.1671G>A1.000
gyrB6911p.Asn558His1.000
gyrB6919c.1680T>C1.000
gyrB6925c.1686T>C1.000
gyrB6931c.1692A>C1.000
gyrB6934c.1695A>G1.000
gyrB6937c.1698G>A1.000
gyrB6949c.1710A>G1.000
gyrB6952c.1713C>G1.000
gyrB6955c.1716G>A1.000
gyrB6965p.Ser576Gly1.000
gyrB6970c.1731C>T1.000
gyrB6973c.1734G>C1.000
gyrB6976c.1737A>G1.000
gyrB6982c.1743A>C1.000
gyrB7000c.1761C>G1.000
gyrB7006c.1767T>G1.000
gyrB7012c.1773G>C1.000
gyrB7051p.Glu604Asp1.000
gyrB7060c.1821T>C1.000
gyrB7066c.1827G>C1.000
gyrB7075c.1836T>G1.000
gyrB7078c.1839A>G1.000
gyrB7081c.1842T>C1.000
gyrB7084c.1845A>G1.000
gyrB7093c.1854T>C1.000
gyrB7099c.1860G>A1.000
gyrB7108c.1869G>A1.000
gyrB7114c.1875C>A1.000
gyrB7124p.Ser629Thr1.000
gyrB7129c.1890T>G1.000
gyrB7132c.1893T>G1.000
gyrB7136c.1897T>C1.000
gyrB7141c.1902T>C1.000
gyrB7144c.1905A>G1.000
gyrB7147c.1908G>C1.000
gyrB7165c.1926C>G1.000
gyrB7178c.1939T>C1.000
gyrB7216c.1977G>C1.000
gyrB7225c.1986T>C1.000
gyrB7237c.1998C>T1.000
gyrA7362p.Glu21Gln1.000
gyrA7391c.90C>T1.000
gyrA7394c.93T>C1.000
gyrA7427c.126G>C1.000
gyrA7442c.141G>C1.000
gyrA7451c.150C>G1.000
gyrA7457c.156T>C1.000
gyrA7472c.171T>C1.000
gyrA7475c.174A>C1.000
gyrA7480p.Phe60Tyr1.000
gyrA7484c.183T>C1.000
gyrA7487c.186C>G1.000
gyrA7490c.189C>T1.000
gyrA7517c.216G>A1.000
gyrA7523c.222C>G1.000
gyrA7532c.231T>C1.000
gyrA7538c.237G>A1.000
gyrA7541c.240C>G1.000
gyrA7571c.270G>C1.000
gyrA7585p.Ser95Thr1.000
gyrA7595c.294C>G1.000
gyrA7607c.306C>G1.000
gyrA7622c.321C>T1.000
gyrA7626c.325C>T1.000
gyrA7631c.330G>C1.000
gyrA7637c.336C>G1.000
gyrA7646c.345C>T1.000
gyrA7649c.348C>T1.000
gyrA7652c.351C>T1.000
gyrA7658c.357A>G1.000
gyrA7664c.363T>C1.000
gyrA7670c.369A>G1.000
gyrA7676c.375G>C1.000
gyrA7683c.382A>C1.000
gyrA7694c.393A>G1.000
gyrA7697c.396C>G1.000
gyrA7710c.409T>C1.000
gyrA7715c.414G>C1.000
gyrA7728c.427A>C1.000
gyrA7760c.459C>T1.000
gyrA7763c.462T>C1.000
gyrA7799c.498A>G1.000
gyrA7835c.534A>G1.000
gyrA7838c.537C>G1.000
gyrA7859c.558A>C1.000
gyrA7865c.564T>C1.000
gyrA7883c.582G>C1.000
gyrA7884p.Arg195Gly1.000
gyrA7892c.591G>C1.000
gyrA7898p.Asp199Glu0.852
gyrA7919p.Glu206Asp1.000
gyrA7923p.His208Tyr1.000
gyrA7928p.Asp209Glu1.000
gyrA7942p.Glu214Ala1.000
gyrA7955c.654G>C1.000
gyrA7958c.657C>G1.000
gyrA7963p.Gly221Glu1.000
gyrA7970c.669T>G1.000
gyrA7976c.675C>A1.000
gyrA7979c.678G>C1.000
gyrA8036c.735A>G1.000
gyrA8039c.738T>C1.000
gyrA8054c.753T>C1.000
gyrA8057c.756A>G1.000
gyrA8069c.768T>C1.000
gyrA8078c.777A>G1.000
gyrA8090c.789C>G1.000
gyrA8099c.798T>C1.000
gyrA8111c.810G>C1.000
gyrA8156c.855T>C1.000
gyrA8168c.867A>G1.000
gyrA8174c.873C>G1.000
gyrA8177c.876A>C1.000
gyrA8198c.897T>C1.000
gyrA8207c.906T>C1.000
gyrA8219c.918T>C1.000
gyrA8225c.924T>C1.000
gyrA8234c.933T>G1.000
gyrA8235c.934T>C1.000
gyrA8253p.Ile318Leu1.000
gyrA8264c.963T>C1.000
gyrA8267c.966G>C1.000
gyrA8270c.969G>C1.000
gyrA8283p.Ile328Leu1.000
gyrA8288c.987T>C1.000
gyrA8294c.993T>C1.000
gyrA8324c.1023T>C1.000
gyrA8339c.1038A>G1.000
gyrA8342c.1041G>C1.000
gyrA8351c.1050C>T1.000
gyrA8366c.1065G>C1.000
gyrA8375c.1074G>C1.000
gyrA8391p.Tyr364His1.000
gyrA8399c.1098T>C1.000
gyrA8420c.1119T>C1.000
gyrA8423c.1122G>C1.000
gyrA8442c.1141C>T1.000
gyrA8453c.1152A>C1.000
gyrA8462c.1161A>G1.000
gyrA8471c.1170T>C1.000
gyrA8480c.1179C>T1.000
gyrA8486c.1185T>C1.000
gyrA8489c.1188A>G1.000
gyrA8498c.1197C>T1.000
gyrA8504c.1203G>C1.000
gyrA8516c.1215T>C1.000
gyrA8519c.1218A>C1.000
gyrA8537c.1236G>A1.000
gyrA8546c.1245T>C1.000
gyrA8552c.1251C>G1.000
gyrA8556p.Ala419Gln1.000
gyrA8561c.1260A>C1.000
gyrA8562c.1261C>T1.000
gyrA8603c.1302A>G1.000
gyrA8619c.1318T>C1.000
gyrA8624c.1323G>C1.000
gyrA8627c.1326C>G1.000
gyrA8636c.1335A>C1.000
gyrA8642c.1341A>G1.000
gyrA8645c.1344C>G0.964
gyrA8672c.1371A>G1.000
gyrA8693c.1392T>C1.000
gyrA8699c.1398A>G1.000
gyrA8711c.1410A>C1.000
gyrA8714c.1413A>G1.000
gyrA8717c.1416C>G1.000
gyrA8720c.1419G>A1.000
gyrA8726c.1425G>A1.000
gyrA8729c.1428T>C1.000
gyrA8732c.1431G>C1.000
gyrA8735c.1434C>T1.000
gyrA8747c.1446A>G1.000
gyrA8756c.1455A>G1.000
gyrA8762c.1461G>C1.000
gyrA8765p.Asp488Glu1.000
gyrA8767p.Arg489Lys1.000
gyrA8779p.Asp493Ala1.000
gyrA8786c.1485T>C1.000
gyrA8796p.Ile499Val1.000
gyrA8801c.1500G>C1.000
gyrA8810c.1509A>C1.000
gyrA8829c.1528T>C1.000
gyrA8852c.1551T>C1.000
gyrA8858c.1557T>C1.000
gyrA8867c.1566A>G1.000
gyrA8870c.1569G>C1.000
gyrA8873c.1572A>C1.000
gyrA8897c.1596T>C1.000
gyrA8903c.1602T>C1.000
gyrA8915c.1614A>G1.000
gyrA8918c.1617C>G0.784
gyrA8939c.1638T>C1.000
gyrA8942c.1641G>C1.000
gyrA8945c.1644G>C1.000
gyrA8946c.1645T>C1.000
gyrA8951c.1650G>A1.000
gyrA8966c.1665C>G1.000
gyrA8967p.Ala556Arg1.000
gyrA8987c.1686C>G1.000
gyrA8990c.1689C>G1.000
gyrA8996c.1695T>C1.000
gyrA8998p.Leu566Trp1.000
gyrA9023c.1722A>C1.000
gyrA9029c.1728T>C1.000
gyrA9032c.1731T>C1.000
gyrA9035c.1734G>C1.000
gyrA9050p.Asp583Glu1.000
gyrA9051c.1750T>C1.000
gyrA9062c.1761C>G1.000
gyrA9065c.1764C>T1.000
gyrA9068c.1767G>C1.000
gyrA9071c.1770G>C1.000
gyrA9074c.1773G>C1.000
gyrA9080c.1779G>T1.000
gyrA9099c.1798T>C1.000
gyrA9104c.1803C>G1.000
gyrA9119c.1818A>G1.000
gyrA9122c.1821C>G1.000
gyrA9134c.1833C>G1.000
gyrA9143c.1842T>C1.000
gyrA9147p.Gly616Ser1.000
gyrA9152c.1851C>T1.000
gyrA9153p.Thr618Glu1.000
gyrA9164c.1863G>C1.000
gyrA9182c.1881T>C1.000
gyrA9191c.1890G>C1.000
gyrA9200c.1899A>G1.000
gyrA9204p.Ser635Thr1.000
gyrA9227c.1926C>G1.000
gyrA9230c.1929T>C1.000
gyrA9233c.1932C>T1.000
gyrA9242c.1941A>C1.000
gyrA9252p.Val651Ile1.000
gyrA9275c.1974G>A1.000
gyrA9278c.1977G>C1.000
gyrA9281c.1980C>G1.000
gyrA9284c.1983T>C1.000
gyrA9291c.1990C>T1.000
gyrA9296c.1995T>C1.000
gyrA9304p.Gly668Glu1.000
gyrA9311c.2010C>T1.000
gyrA9323c.2022C>G1.000
gyrA9335c.2034G>C1.000
gyrA9345c.2044A>C1.000
gyrA9374c.2073G>C0.818
gyrA9377c.2076A>G1.000
gyrA9383c.2082T>C1.000
gyrA9386c.2085T>C1.000
gyrA9395c.2094G>C1.000
gyrA9413c.2112G>C1.000
gyrA9419c.2118T>C1.000
gyrA9420p.Ile707Ala1.000
gyrA9429p.Arg710Tyr1.000
gyrA9443c.2142G>C1.000
gyrA9449c.2148C>G1.000
gyrA9452c.2151G>C1.000
gyrA9455c.2154T>C1.000
gyrA9458c.2157A>G1.000
gyrA9467c.2166T>C1.000
gyrA9518c.2217A>G1.000
gyrA9521c.2220C>T1.000
gyrA9527c.2226A>G1.000
gyrA9542c.2241T>C1.000
gyrA9545c.2244A>G1.000
gyrA9548c.2247T>C1.000
gyrA9557c.2256G>C1.000
gyrA9560c.2259C>G1.000
gyrA9566c.2265C>T1.000
gyrA9575c.2274G>C1.000
gyrA9578c.2277C>T0.900
gyrA9590c.2289T>G1.000
gyrA9593c.2292G>T1.000
gyrA9605c.2304C>G1.000
gyrA9611p.Asp770Glu1.000
gyrA9626c.2325T>C1.000
gyrA9629c.2328C>G1.000
gyrA9630p.Val777Ile1.000
gyrA9635c.2334T>C1.000
gyrA9644c.2343T>C1.000
gyrA9647c.2346C>T1.000
gyrA9650c.2349G>C1.000
gyrA9665c.2364A>G1.000
gyrA9666p.Arg789Gly1.000
gyrA9674c.2373T>C1.000
gyrA9677c.2376C>T1.000
gyrA9701c.2400T>C1.000
gyrA9704c.2403T>C1.000
gyrA9708c.2407T>C1.000
gyrA9722c.2421C>T1.000
gyrA9734c.2433A>G1.000
gyrA9738c.2437T>C1.000
gyrA9749c.2448G>C1.000
rpoB759573c.-234T>C1.000
rpoB759606c.-201T>C1.000
rpoB759644c.-163T>A1.000
rpoB759647c.-160T>C1.000
rpoB759817p.Ser4Phe1.000
rpoB760070c.264T>G1.000
rpoB760088c.282C>G1.000
rpoB760091c.285G>C1.000
rpoB760101c.295T>C1.000
rpoB760106c.300G>T1.000
rpoB760112c.306T>C1.000
rpoB760118c.312T>C1.000
rpoB760121c.315T>C1.000
rpoB760130p.Asp108Glu1.000
rpoB760139c.333A>G1.000
rpoB760142c.336C>G1.000
rpoB760181c.375T>C1.000
rpoB760184c.378A>G1.000
rpoB760196c.390C>G1.000
rpoB760223c.417T>C1.000
rpoB760235c.429T>C1.000
rpoB760253c.447T>C1.000
rpoB760283c.477G>C1.000
rpoB760307c.501T>C1.000
rpoB760328c.522G>C1.000
rpoB760331c.525G>C1.000
rpoB760337c.531C>G1.000
rpoB760340c.534G>C0.967
rpoB760361c.555T>C1.000
rpoB760376p.Asp190Glu1.000
rpoB760406c.600G>C1.000
rpoB760418c.612G>C1.000
rpoB760424c.618C>G1.000
rpoB760430c.624T>C1.000
rpoB760475c.669A>G1.000
rpoB760481c.675G>C1.000
rpoB760484c.678A>G1.000
rpoB760522p.Ser239Asn1.000
rpoB760532c.726T>C1.000
rpoB760533p.Val243Thr1.000
rpoB760547c.741G>C1.000
rpoB760563p.Arg253Met1.000
rpoB760591p.Val262Ala1.000
rpoB760611c.805T>C1.000
rpoB760634c.828T>C1.000
rpoB760646c.840C>G1.000
rpoB760655c.849A>G1.000
rpoB760661c.855A>C1.000
rpoB760670c.864G>C1.000
rpoB760674c.868T>C1.000
rpoB760679c.873A>G1.000
rpoB760683c.877T>C1.000
rpoB760718c.912C>G1.000
rpoB760721c.915C>G1.000
rpoB760724c.918T>C1.000
rpoB760730c.924T>C1.000
rpoB760751c.945G>C1.000
rpoB760757c.951T>C1.000
rpoB760759p.Val318Ala1.000
rpoB760763c.957C>T1.000
rpoB760769c.963C>G1.000
rpoB760775c.969G>C1.000
rpoB760776c.970T>A1.000
rpoB760793c.987A>G1.000
rpoB760805c.999G>C1.000
rpoB760817c.1011A>G1.000
rpoB760820c.1014T>C1.000
rpoB760826c.1020C>G1.000
rpoB760830c.1024T>C1.000
rpoB760845p.Thr347Pro1.000
rpoB760859c.1053T>C1.000
rpoB760869p.Val355Ile1.000
rpoB760886c.1080A>G1.000
rpoB760919c.1113C>G1.000
rpoB760925c.1119T>C1.000
rpoB760928c.1122G>C1.000
rpoB760934c.1128C>T1.000
rpoB760946c.1140A>G1.000
rpoB760970c.1164G>C1.000
rpoB760982c.1176G>C1.000
rpoB760985c.1179G>C1.000
rpoB760991c.1185G>C1.000
rpoB761015c.1209G>C1.000
rpoB761016404E>404*0.154
rpoB761021c.1215G>C1.000
rpoB761027c.1221A>G1.000
rpoB761036c.1230G>C1.000
rpoB761037c.1231T>C1.000
rpoB761051c.1245G>T1.000
rpoB761054c.1248G>C1.000
rpoB761057c.1251G>C1.000
rpoB761060c.1254C>G1.000
rpoB761063c.1257C>G1.000
rpoB761097c.1291A>T1.000
rpoB761102c.1296A>G1.000
rpoB761133c.1327T>C1.000
rpoB761150c.1344A>C1.000
rpoB761165c.1359G>C1.000
rpoB761168c.1362C>G1.000
rpoB761171c.1365C>T1.000
rpoB761180c.1374A>C1.000
rpoB761183c.1377T>G1.000
rpoB761189c.1383T>G1.000
rpoB761213c.1407G>A1.000
rpoB761222c.1416G>C1.000
rpoB761231c.1425C>G1.000
rpoB761249c.1443A>G1.000
rpoB761255c.1449T>G1.000
rpoB761261c.1455G>T1.000
rpoB761301c.1495C>A1.000
rpoB761327c.1521A>G1.000
rpoB761360c.1554T>C1.000
rpoB761362p.Ser519Thr1.000
rpoB761373p.Val523His1.000
rpoB761414c.1608A>G1.000
rpoB761423c.1617T>C1.000
rpoB761492c.1686G>C1.000
rpoB761510c.1704T>C1.000
rpoB761531c.1725C>G1.000
rpoB761537c.1731C>G1.000
rpoB761570c.1764T>C1.000
rpoB761573c.1767C>G1.000
rpoB761579c.1773G>C1.000
rpoB761606c.1800C>G1.000
rpoB761612c.1806G>C1.000
rpoB761615c.1809A>C1.000
rpoB761636c.1830G>T1.000
rpoB761645c.1839C>G1.000
rpoB761648c.1842T>C1.000
rpoB761657c.1851C>G1.000
rpoB761675c.1869G>C1.000
rpoB761690c.1884G>C0.767
rpoB761725p.Glu640Gly1.000
rpoB761728c.1923 1924insTC1.000
rpoC763335c.-35A>C1.000
rpoC763338c.-32A>C1.000
rpoC763343c.-27T>C1.000
rpoC763351c.-19T>C1.000
rpoC763352c.-18T>A1.000
rpoC763402c.33C>G1.000
rpoC763411c.42T>G1.000
rpoC763414c.45T>C1.000
rpoC763441c.72C>G1.000
rpoC763444c.75T>C1.000
rpoC763456c.87A>G1.000
rpoC763468c.99G>C1.000
rpoC763486c.117T>C1.000
rpoC763528c.159G>A1.000
rpoC763546c.177A>G1.000
rpoC763570c.201G>C1.000
rpoC763594c.225C>T1.000
rpoC763633c.264T>C1.000
rpoC763636c.267T>C1.000
rpoC763642c.273G>C1.000
rpoC763658c.289C>T1.000
rpoC763675c.306C>G1.000
rpoC763696c.327T>C1.000
rpoC763702c.333C>G1.000
rpoC763708c.339G>A1.000
rpoC763709c.340C>T1.000
rpoC763714c.345G>C1.000
rpoC763717c.348T>C1.000
rpoC763723c.354G>C1.000
rpoC763732c.363C>G1.000
rpoC763735c.366G>C1.000
rpoC763744c.375G>C1.000
rpoC763765c.396T>C1.000
rpoC763768c.399C>G1.000
rpoC763780c.411C>G1.000
rpoC763783c.414G>C1.000
rpoC763801c.432C>G1.000
rpoC763807c.438T>C1.000
rpoC763819c.450G>C1.000
rpoC763831c.462A>G1.000
rpoC763835p.Ala156Met1.000
rpoC763858c.489A>G1.000
rpoC763872p.Gly168Ala1.000
rpoC763876p.Glu169Asp1.000
rpoC763879c.510A>G1.000
rpoC763888c.519G>C1.000
rpoC763891c.522G>C1.000
rpoC763894c.525A>G1.000
rpoC763945c.576T>C1.000
rpoC763960c.591T>C1.000
rpoC763967p.Gly200Ser1.000
rpoC763978c.609C>G1.000
rpoC763996c.627T>C1.000
rpoC764005c.636G>C1.000
rpoC764011c.642T>C1.000
rpoC764024c.655T>C1.000
rpoC764040p.Ser224Asn1.000
rpoC764044c.675T>C1.000
rpoC764059c.690G>C1.000
rpoC764083c.714A>G1.000
rpoC764098c.729A>G0.947
rpoC764101c.732C>G0.946
rpoC764131c.762T>C1.000
rpoC764161c.792G>C1.000
rpoC764188c.819A>G1.000
rpoC764195p.Ser276Gln1.000
rpoC764203c.834G>T1.000
rpoC764206c.837T>C1.000
rpoC764257c.888G>C1.000
rpoC764266c.897T>C1.000
rpoC764269c.900G>C1.000
rpoC764278c.909A>G1.000
rpoC764282c.913T>A1.000
rpoC764320c.951C>G1.000
rpoC764365c.996C>T1.000
rpoC764380c.1011G>C1.000
rpoC764381c.1012T>A1.000
rpoC764387c.1018T>C1.000
rpoC764405c.1036A>C1.000
rpoC764431c.1062G>C1.000
rpoC764434c.1065A>G1.000
rpoC764446c.1077T>C1.000
rpoC764449c.1080G>C1.000
rpoC764452c.1083T>C1.000
rpoC764458c.1089G>C1.000
rpoC764461c.1092A>G1.000
rpoC764470c.1101C>T1.000
rpoC764497c.1128A>G1.000
rpoC764503c.1134G>C1.000
rpoC764521c.1152T>C1.000
rpoC764536c.1167G>C0.941
rpoC764539c.1170C>G0.944
rpoC764560c.1191T>C1.000
rpoC764566c.1197C>G1.000
rpoC764575c.1206T>G1.000
rpoC764576c.1207T>A1.000
rpoC764581c.1212T>C1.000
rpoC764626c.1257C>T1.000
rpoC764632c.1263T>C1.000
rpoC764650c.1281G>T1.000
rpoC764695c.1326T>C1.000
rpoC764716c.1347G>C1.000
rpoC764752c.1383G>C1.000
rpoC764764c.1395T>C1.000
rpoC764779c.1410G>A1.000
rpoC764791c.1422C>G1.000
rpoC764809c.1440C>T1.000
rpoC764812c.1443C>G1.000
rpoC764815c.1446A>G1.000
rpoC764824c.1455T>C1.000
rpoC764830c.1461C>G1.000
rpoC764858c.1489T>C1.000
rpoC764872c.1503A>G1.000
rpoC764893c.1524T>C1.000
rpoC764911c.1542A>G1.000
rpoC764923c.1554A>G1.000
rpoC764932c.1563C>A1.000
rpoC764968c.1599T>C1.000
rpoC764995c.1626C>G1.000
rpoC765007c.1638T>G1.000
rpoC765008c.1639T>C1.000
rpoC765011c.1642A>T1.000
rpoC765019c.1650A>G1.000
rpoC765034c.1665T>C1.000
rpoC765040c.1671T>C1.000
rpoC765041c.1672T>C1.000
rpoC765047c.1678T>C1.000
rpoC765073c.1704G>C1.000
rpoC765076c.1707A>G1.000
rpoC765079c.1710T>G1.000
rpoC765082c.1713G>C1.000
rpoC765085c.1716T>C1.000
rpoC765089c.1720T>C1.000
rpoC765103c.1734G>A1.000
rpoC765287c.1918C>T1.000
rpoC765292c.1923G>T1.000
rpoC765298c.1929G>C1.000
rpoC765300p.Val644Ala1.000
rpoC765319c.1950A>G1.000
rpoC765326p.His653Ala1.000
rpoC765330p.Ser654Asn1.000
rpoC765349c.1980T>C1.000
rpoC765352c.1983G>C1.000
rpoC765383p.Met672Leu1.000
rpoC765404p.Leu679Val1.000
rpoC765409c.2040T>C1.000
rpoC765412c.2043T>C1.000
rpoC765421c.2052C>G1.000
rpoC765451c.2082C>G0.682
rpoC765452p.Ala695Ser0.674
rpoC765478c.2109T>C1.000
rpoC765499c.2130C>G1.000
rpoC765508c.2139C>G1.000
rpoC765541c.2172C>G1.000
rpoC765553c.2184C>T1.000
rpoC765556c.2187G>C1.000
rpoC765559c.2190G>C1.000
rpoC765578c.2209C>T1.000
rpoC765583c.2214G>T1.000
rpoC765613p.His748Gln1.000
rpoC765625c.2256C>G1.000
rpoC765628c.2259G>C1.000
rpoC765631p.Asp754Glu1.000
rpoC765658c.2289C>T1.000
rpoC765700c.2331T>C1.000
rpoC765734c.2365T>C1.000
rpoC765739c.2370G>C1.000
rpoC765751c.2382C>G1.000
rpoC765753p.Asp795Ala1.000
rpoC765772c.2403C>G1.000
rpoC765784c.2415C>G1.000
rpoC765796c.2427C>T1.000
rpoC765811c.2442T>C1.000
rpoC765814c.2445A>G1.000
rpoC765826c.2457T>C1.000
rpoC765835c.2466C>T1.000
rpoC765883c.2514C>G1.000
rpoC765886c.2517C>G1.000
rpoC765892c.2523T>C1.000
rpoC765928c.2559C>G1.000
rpoC765967c.2598C>T1.000
rpoC765970c.2601C>T1.000
rpoC765979c.2610C>G1.000
rpoC765982c.2613C>T1.000
rpoC765985c.2616C>T1.000
rpoC765994c.2625A>T1.000
rpoC766009c.2640G>C1.000
rpoC766010c.2641T>A1.000
rpoC766021c.2652G>C1.000
rpoC766043p.Gln892Glu1.000
rpoC766054c.2685C>G1.000
rpoC766069c.2700G>A1.000
rpoC766082p.Ala905Gln1.000
rpoC766096c.2727G>C1.000
rpoC766105c.2736C>T1.000
rpoC766129c.2760C>G1.000
rpoC766135c.2766G>A1.000
rpoC766141c.2772C>T1.000
rpoC766142c.2773C>T1.000
rpoC766258c.2889T>C1.000
rpoC766270c.2901G>C1.000
rpoC766273c.2904T>C1.000
rpoC766274p.Ala969Thr1.000
rpoC766279c.2910C>G1.000
rpoC766280p.Ser971Gly1.000
rpoC766309c.2940G>C1.000
rpoC766312c.2943T>G1.000
rpoC766315c.2946C>G1.000
rpoC766327c.2958C>G1.000
rpoC766345c.2976T>C1.000
rpoC766348c.2979A>G1.000
rpoC766363c.2994G>C1.000
rpoC766381c.3012C>T1.000
rpoC766384c.3015A>G1.000
rpoC766390c.3021C>T1.000
rpoC766408c.3039C>T1.000
rpoC766426c.3057C>T1.000
rpoC766447c.3078T>C1.000
rpoC766483c.3114G>C1.000
rpoC766484p.Val1039Ile1.000
rpoC766492c.3123T>C1.000
rpoC766495c.3126C>T1.000
rpoC766522c.3153C>G1.000
rpoC766528c.3159T>C1.000
rpoC766531c.3162G>T1.000
rpoC766543c.3174C>T1.000
rpoC766549c.3180G>C1.000
rpoC766573c.3204T>C1.000
rpoC766583p.Gly1072Ser1.000
rpoC766588c.3219G>A1.000
rpoC766591c.3222A>G1.000
rpoC766594c.3225G>C1.000
rpoC766607p.Ile1080Leu1.000
rpoC766630c.3261G>C1.000
rpoC766645c.3276A>G1.000
rpoC766651c.3282T>C1.000
rpoC766657c.3288A>G1.000
rpoC766672c.3303T>C1.000
rpoC766738c.3369G>T1.000
rpoC766750c.3381C>G1.000
rpoC766765c.3396A>C1.000
rpoC766774c.3405T>C1.000
rpoC766804c.3435A>G1.000
rpoC766843c.3474T>C1.000
rpoC766861c.3492G>C1.000
rpoC766864c.3495G>C1.000
rpoC766894c.3525T>C1.000
rpoC766895c.3526T>C1.000
rpoC766900c.3531T>C1.000
rpoC766933c.3564A>G1.000
rpoC766945c.3576A>G1.000
rpoC766963c.3594T>C1.000
rpoC766972c.3603G>C1.000
rpoC766978c.3609C>G1.000
rpoC766996c.3627C>T1.000
rpoC767009c.3640T>A1.000
rpoC767014c.3645G>C1.000
rpoC767033c.3664T>A1.000
rpoC767059c.3690T>G1.000
rpoC767062c.3693C>A1.000
rpoC767074c.3705T>C1.000
rpoC767098c.3729T>C1.000
rpoC767119c.3750A>G1.000
rpoC767134c.3765C>G1.000
rpoC767158c.3789T>C1.000
rpoC767167c.3798C>G1.000
rpoC767180p.Ala1271Gln1.000
rpoC767191c.3822C>G1.000
rpoC767206c.3837C>G1.000
rpoC767209c.3840T>C1.000
rpoC767212c.3843G>C1.000
rpoC767221c.3852C>G1.000
rpoC767233c.3864T>C1.000
rpoC767248c.3879C>T1.000
rpoC767263c.3894T>C0.436
rpoC767264p.Ala1299Gln0.436
rpoC767275c.3906T>C1.000
rpoC767278c.3909T>C1.000
rpoC767281c.3912C>G1.000
rpoC767284c.3915C>G1.000
rpsL781348c.-212C>G1.000
rpsL781353c.-207T>C1.000
rpsL781373c.-187G>C1.000
rpsL781571c.12C>T1.000
rpsL781608p.Ser17Gly1.000
rpsL781631c.72G>C1.000
rpsL781649c.90T>C1.000
rpsL781655c.96T>C1.000
rpsL781682c.123T>C1.000
rpsL781715c.156T>C1.000
rpsL781728c.169T>C1.000
rpsL781736c.177T>C1.000
rpsL781751c.192G>C1.000
rpsL781754c.195G>C1.000
rpsL781760c.201T>C1.000
rpsL781793c.234G>C1.000
rpsL781832c.273T>C1.000
rpsL781841c.282C>G1.000
rpsL781859c.300T>C1.000
rpsL781868c.309T>C1.000
rpsL781871c.312G>C1.000
rpsL781892c.333A>G1.000
rpsL781898c.339A>T1.000
rpsL781916c.357T>C1.000
rpsL781929p.Gly124Ser1.000
rplC800796c.-13A>T1.000
rplC800814c.6A>G1.000
rplC800817c.9A>T1.000
rplC800844c.36T>C1.000
rplC800865c.57A>G1.000
rplC800867p.Ser20Asn1.000
rplC800874c.66A>G1.000
rplC800877c.69A>C1.000
rplC800880c.72A>G1.000
rplC800889c.81C>G1.000
rplC800907c.99C>G1.000
rplC800916c.108A>G1.000
rplC800937c.129A>G1.000
rplC800939p.Arg44Gln1.000
rplC800946c.138T>C1.000
rplC800949c.141T>C1.000
rplC800955c.147C>G1.000
rplC800967c.159C>G1.000
rplC800970c.162T>C1.000
rplC800982c.174C>T1.000
rplC800985c.177A>G1.000
rplC800994c.186C>G1.000
rplC801004p.Leu66Val1.000
rplC801009c.201A>C1.000
rplC801012c.204T>C1.000
rplC801019p.Thr71Ala1.000
rplC801024c.216C>G1.000
rplC801027c.219C>G1.000
rplC801031p.Val75Ile1.000
rplC801039c.231A>G1.000
rplC801045c.237A>G1.000
rplC801047p.Tyr80Phe1.000
rplC801054c.246G>C1.000
rplC801070p.Asp88Asn1.000
rplC801073p.Ser89Pro1.000
rplC801078c.270T>C1.000
rplC801081c.273C>G1.000
rplC801085p.Thr93Ala1.000
rplC801090c.282G>A1.000
rplC801099c.291T>C1.000
rplC801102c.294G>C1.000
rplC801105c.297A>G1.000
rplC801109c.301T>C1.000
rplC801114c.306C>G1.000
rplC801127p.Ala107Thr1.000
rplC801132c.324T>C1.000
rplC801147c.339T>C1.000
rplC801150c.342G>C1.000
rplC801153c.345G>C1.000
rplC801156c.348T>A1.000
rplC801171c.363A>G1.000
rplC801174c.366T>C1.000
rplC801183c.375C>A1.000
rplC801222c.414T>C1.000
rplC801228c.420T>C1.000
rplC801246c.438C>G1.000
rplC801249c.441T>G1.000
rplC801255c.447C>T1.000
rplC801267c.459A>C1.000
rplC801270c.462T>C1.000
rplC801276c.468G>C1.000
rplC801279c.471G>C1.000
rplC801282c.474G>C1.000
rplC801301c.493C>A1.000
rplC801312c.504G>C1.000
rplC801324c.516T>C1.000
rplC801336c.528C>G1.000
rplC801339c.531T>C1.000
rplC801341p.Leu178Gln1.000
rplC801348c.540T>G1.000
rplC801357c.549T>C1.000
rplC801367p.Ala187Thr1.000
rplC801396c.588T>C0.742
rplC801402c.594T>C1.000
rplC801405c.597T>C1.000
rplC801417c.609T>C1.000
rplC801423c.615G>C1.000
rplC801438c.630T>C1.000
rplC801442p.Ile212Val1.000
rplC801461653G>A1.000
embR1416351p.Val333Ile1.000
rrs1471923r.78t>c1.000
rrs1471934r.89a>g1.000
rrs1471969r.124t>c1.000
rrs1471970r.125g>a1.000
rrs1472193r.348a>t0.276
rrs1472197r.352a>t0.310
rrs1472225r.380c>a0.310
rrs1472240r.395g>a0.292
rrs1472242r.397c>t0.143
rrs1472251r.406g>a0.381
rrs1472252r.407g>a0.143
rrs1472253r.408g>c0.292
rrs1472256r.411t>a0.143
rrs1472259r.414c>a0.407
rrs1472271r.426t>c0.269
rrs1472277r.432c>g0.240
rrs1472282r.437t>g0.273
rrs1472288r.443a>c0.240
rrs1472291r.446g>a0.240
rrs1472293r.448c>g0.240
rrs1472298r.453g>a0.240
rrs1472315r.470t>a0.240
rrs1472324r.479g>c0.240
rrs1472325r.480g>t0.214
rrs1472328r.483g>a0.231
rrs1472329r.484a>g0.207
rrs1472332r.487a>g0.214
rrs1472338r.493a>c0.273
rrs1472344r.499c>t0.432
rrs1472378r.533g>t0.167
rrs1472379r.534t>g0.366
rrs1472382r.537g>a0.342
rrs1472389r.544g>a0.383
rrs1472396r.551a>t0.170
rrs1472400r.555c>t0.191
rrs1472412r.567a>g0.265
rrs1472414r.569c>t0.250
rrs1472415r.570t>g0.265
rrs1472507r.662c>g0.133
rrs1472518r.673g>a0.149
rrs1472530r.685g>a0.442
rrs1472537r.692c>t0.463
rrs1472544r.699c>t0.180
rrs1472545r.700a>g0.289
rrs1472557r.712g>a0.261
rrs1472571r.726g>c0.310
rrs1472573r.728c>t0.250
rrs1472574r.729t>c0.236
rrs1472579r.734g>a0.368
rrs1472581r.736a>t0.182
rrs1472598r.753a>c0.379
rrs1472599r.754g>a0.254
rrs1472616r.771g>a0.288
rrs1472634r.789t>c0.170
rrs1472969r.1124a>g1.000
rrs1472970r.1125c>g1.000
rrs1472977r.1132g>c1.000
rrs1472978r.1133t>c1.000
rrs1473104r.1259c>t0.950
rrs1473105r.1260g>a1.000
rrs1473120r.1275c>ct0.950
rrs1473123r.1278a>t1.000
rrs1473145r.1300c>t1.000
rrs1473166r.1321g>a1.000
rrs1473288r.1443c>ctt0.947
rrs1473290r.1445c>t1.000
rrl1473399c.-259A>AG1.000
rrl1473401c.-257G>A1.000
rrl1473417c.-241C>T1.000
rrl1473419c.-239T>C1.000
rrl1473420c.-238A>G1.000
rrl1473421c.-237G>A1.000
rrl1473436c.-222T>C1.000
rrl1473437c.-221T>C1.000
rrl1473569c.-89A>T1.000
rrl1473571c.-87C>T1.000
rrl1473668r.11c>t1.000
rrl1473756r.99g>a1.000
rrl1473758r.101g>t1.000
rrl1473806r.149c>t1.000
rrl1473813r.156c>t1.000
rrl1473839r.182g>t1.000
rrl1473877r.220g>a1.000
rrl1473898r.241c>t1.000
rrl1473899r.242a>c1.000
rrl1473937r.280c>t1.000
rrl1473944r.287g>a1.000
rrl1473945r.288t>c1.000
rrl1473980r.323a>at1.000
rrl1473981r.324g>t1.000
rrl1473995r.338g>t1.000
rrl1474001r.344c>t1.000
rrl1474009r.352a>g1.000
rrl1474012r.355c>t1.000
rrl1474140r.483c>t1.000
rrl1474151r.494c>t1.000
rrl1474181r.524c>t1.000
rrl1474249r.592g>t1.000
rrl1474290r.633ttttcctctccggagg>t1.000
rrl1474306r.649a>c1.000
rrl1474308r.651g>t1.000
rrl1474310r.653t>g1.000
rrl1474356r.699t>c1.000
rrl1474362r.705a>g1.000
rrl1474376r.719t>c1.000
rrl1474409r.752ggcgacccacac>g1.000
rrl1474639r.982g>a1.000
rrl1474760r.1103a>g0.138
rrl1474779r.1122g>a0.148
rrl1474780r.1123c>t0.148
rrl1474782r.1125g>a0.154
rrl1474794r.1137c>t1.000
rrl1474812r.1155g>a0.850
rrl1474823r.1166c>t1.000
rrl1474831r.1174a>g1.000
rrl1474904r.1247g>a1.000
rrl1474991r.1334t>c1.000
rrl1475006r.1349a>t1.000
rrl1475061r.1404c>t1.000
rrl1475088r.1431a>t1.000
rrl1475199r.1542g>a1.000
rrl1475206r.1549c>t1.000
rrl1475209r.1552g>c1.000
rrl1475213r.1556c>t1.000
rrl1475249r.1592t>c1.000
rrl1475252r.1595c>t1.000
rrl1475266r.1609t>c1.000
rrl1475267r.1610g>a1.000
rrl1475271r.1614a>c1.000
rrl1475273r.1616t>a1.000
rrl1475275r.1618c>t1.000
rrl1475276r.1619t>c1.000
rrl1475291r.1634a>c1.000
rrl1475313r.1656g>a1.000
rrl1475315r.1658a>t1.000
rrl1475333r.1676t>c1.000
rrl1475355r.1698c>t1.000
rrl1475369r.1712g>c1.000
rrl1475419r.1762c>t1.000
rrl1475483r.1826c>t1.000
rrl1475505r.1848g>a1.000
rrl1475526r.1869c>a1.000
rrl1475599r.1942a>g0.935
rrl1475608r.1951t>c0.933
rrl1475638r.1981c>t1.000
rrl1475642r.1985t>c1.000
rrl1475657r.2000a>g1.000
rrl1475659r.2002g>t0.957
rrl1475763r.2106c>t1.000
rrl1475881r.2224t>c1.000
rrl1475988r.2331a>g1.000
rrl1476025r.2368g>t1.000
rrl1476030r.2373a>g1.000
rrl1476032r.2375c>a1.000
rrl1476033r.2376t>c1.000
rrl1476034r.2377c>a1.000
rrl1476045r.2388g>t1.000
rrl1476047r.2390g>t1.000
rrl1476049r.2392c>t1.000
rrl1476086r.2429g>a1.000
rrl1476089r.2432t>c1.000
rrl1476095r.2438c>g1.000
rrl1476104r.2447tg>t1.000
rrl1476106r.2449a>t1.000
rrl1476115r.2458t>c1.000
rrl1476117r.2460g>c1.000
rrl1476224r.2567a>g1.000
rrl1476281r.2624t>c1.000
rrl1476583r.2926g>a1.000
rrl1476584r.2927c>t1.000
rrl1476597r.2940g>a1.000
rrl1476608r.2951c>g1.000
rrl1476628r.2971t>a1.000
rrl1476689r.3032a>t1.000
rrl1476690r.3033c>t1.000
rrl1476693r.3036g>a1.000
rrl1476695r.3038t>a1.000
rrl1476716r.3059a>c1.000
rrl1476723r.3066t>a1.000
rrl1476725r.3068c>t1.000
rrl1476726r.3069a>g1.000
rrl1476732r.3075t>c1.000
rrl1476755r.3098g>a1.000
rrl1476759r.3102t>c1.000
rrl1476770r.3113t>c1.000
rrl1476771r.3114g>a1.000
fabG11673535c.96A>C1.000
fabG11673547c.108T>C1.000
fabG11673574c.135C>G1.000
fabG11673580c.141T>C1.000
fabG11673589c.150A>G1.000
fabG11673595c.156A>C1.000
fabG11673596p.Lys53Asp1.000
fabG11673607c.168T>C1.000
fabG11673610c.171C>T1.000
fabG11673616c.177A>G1.000
fabG11673619c.180T>C1.000
fabG11673633p.Ser65Asn1.000
fabG11673646c.207T>C1.000
fabG11673658c.219G>A1.000
fabG11673660p.Ala74Glu1.000
fabG11673664c.225A>G1.000
fabG11673667c.228A>G1.000
fabG11673679c.240T>G1.000
fabG11673709c.270C>T1.000
fabG11673710p.Leu91Ile1.000
fabG11673716p.Ala93Lys1.000
fabG11673730c.291C>G1.000
fabG11673733p.Met98Ile1.000
fabG11673742c.303C>G1.000
fabG11673748c.309A>G1.000
fabG11673749p.Lys104Arg1.000
fabG11673755p.Glu106Thr1.000
fabG11673758p.Lys107Glu1.000
fabG11673778c.339C>G1.000
inhA1674199c.-3C>G1.000
inhA1674205p.Thr2Ala1.000
inhA1674216c.15G>C1.000
inhA1674231c.30T>C1.000
inhA1674237c.36T>C1.000
inhA1674239p.Ser13Thr1.000
inhA1674243c.42A>G1.000
inhA1674279c.78A>C1.000
inhA1674280p.Arg27Lys1.000
inhA1674285c.84A>G1.000
inhA1674295p.Gln32Ala1.000
inhA1674300c.99C>G1.000
inhA1674303c.102C>G1.000
inhA1674307c.106C>T1.000
inhA1674315c.114C>G1.000
inhA1674321c.120G>C1.000
inhA1674342c.141T>C1.000
inhA1674352p.Thr51Val1.000
inhA1674368p.Ala56Glu1.000
inhA1674379c.178C>T1.000
inhA1674382p.Leu61Ile1.000
inhA1674387c.186A>G1.000
inhA1674399c.198A>G1.000
inhA1674461p.Lys87Arg1.000
inhA1674480c.279T>C1.000
inhA1674486c.285T>C1.000
inhA1674489c.288G>C1.000
inhA1674507c.306G>C1.000
inhA1674537c.336C>G1.000
inhA1674542p.Ala114Glu1.000
inhA1674549c.348G>C1.000
inhA1674555c.354G>A1.000
inhA1674561c.360C>T1.000
inhA1674564c.363C>T1.000
inhA1674582c.381T>C1.000
inhA1674585c.384T>C1.000
inhA1674589p.Met130Leu1.000
inhA1674624c.423A>C1.000
inhA1674627c.426T>G1.000
inhA1674630c.429C>G1.000
inhA1674636c.435C>G1.000
inhA1674639c.438C>T1.000
inhA1674654c.453G>C1.000
inhA1674693c.492C>G1.000
inhA1674703c.502T>C1.000
inhA1674718c.517A>C1.000
inhA1674732c.531C>G1.000
inhA1674745p.Tyr182His1.000
inhA1674750c.549T>C1.000
inhA1674756c.555T>C1.000
inhA1674771c.570C>G1.000
inhA1674774c.573A>G1.000
inhA1674855c.654C>G1.000
inhA1674876c.675C>G1.000
inhA1674879c.678T>C1.000
inhA1674903c.702T>C1.000
inhA1674904p.Ala235Pro1.000
inhA1674909c.708G>C1.000
inhA1674915c.714C>G1.000
inhA1674942c.741T>C1.000
inhA1674957c.756G>C1.000
inhA1674963c.762G>C1.000
inhA1674966c.765T>C1.000
inhA1674967p.Asp256Thr1.000
inhA1674993c.792G>C1.000
inhA1674994p.His265Ser1.000
inhA1675008c.807C>G1.000
rpsA1833489c.-53T>A1.000
rpsA1833518c.-24C>A1.000
rpsA1833541c.-1T>C1.000
rpsA1833554p.Thr5Ala1.000
rpsA1833568c.27G>C1.000
rpsA1833589c.48A>T1.000
rpsA1833595c.54T>C1.000
rpsA1833619c.78A>C1.000
rpsA1833667c.126C>G1.000
rpsA1833724c.183C>G1.000
rpsA1833727c.186G>C1.000
rpsA1833742c.201A>G1.000
rpsA1833745c.204G>C1.000
rpsA1833787c.246C>G1.000
rpsA1833790c.249T>A1.000
rpsA1833799c.258C>G1.000
rpsA1833811c.270G>C1.000
rpsA1833838c.297G>C1.000
rpsA1833841c.300C>G1.000
rpsA1833847c.306C>G1.000
rpsA1833856c.315A>G1.000
rpsA1833862c.321G>T1.000
rpsA1833874c.333T>C1.000
rpsA1833928c.387G>C1.000
rpsA1833940c.399C>G1.000
rpsA1833970c.429G>C1.000
rpsA1833979c.438T>C1.000
rpsA1834000c.459G>C0.822
rpsA1834015c.474G>C1.000
rpsA1834021c.480C>T1.000
rpsA1834097c.556T>A1.000
rpsA1834102c.561T>C1.000
rpsA1834150c.609G>C1.000
rpsA1834153c.612T>C1.000
rpsA1834154p.Asn205Gln1.000
rpsA1834157c.616T>C1.000
rpsA1834162c.621A>G1.000
rpsA1834165c.624A>G1.000
rpsA1834169p.Thr210Ala0.913
rpsA1834177c.636A>C1.000
rpsA1834186c.645C>G1.000
rpsA1834189c.648G>C1.000
rpsA1834195c.654G>C1.000
rpsA1834222c.681T>C1.000
rpsA1834231c.690T>C1.000
rpsA1834240c.699T>C1.000
rpsA1834249c.708T>C1.000
rpsA1834261c.720A>C1.000
rpsA1834264c.723G>C1.000
rpsA1834297c.756C>G1.000
rpsA1834303c.762T>G1.000
rpsA1834306c.765T>C1.000
rpsA1834348c.807T>C1.000
rpsA1834366c.825A>G1.000
rpsA1834375c.834G>A1.000
rpsA1834396c.855G>C1.000
rpsA1834411c.870T>C1.000
rpsA1834417c.876G>C1.000
rpsA1834423c.882G>C1.000
rpsA1834435c.894G>C1.000
rpsA1834451c.910T>C1.000
rpsA1834465c.924T>C1.000
rpsA1834468c.927A>G1.000
rpsA1834474c.933C>G1.000
rpsA1834489c.948T>C1.000
rpsA1834498c.957C>T1.000
rpsA1834528c.987T>C1.000
rpsA1834546c.1005T>C1.000
rpsA1834555c.1014T>C1.000
rpsA1834558c.1017C>G1.000
rpsA1834606c.1065C>G1.000
rpsA1834609c.1068T>C1.000
rpsA1834622c.1081T>A1.000
rpsA1834633c.1092A>G1.000
rpsA1834639c.1098T>C1.000
rpsA1834666c.1125G>C1.000
rpsA1834669c.1128G>C1.000
rpsA1834688c.1147A>T1.000
rpsA1834726c.1185C>A1.000
rpsA1834732c.1191T>C1.000
rpsA1834733p.Ala398Pro1.000
rpsA1834753c.1212T>C1.000
rpsA1834765c.1224A>G1.000
rpsA1834780c.1239A>G1.000
rpsA1834786c.1245A>G1.000
rpsA1834789c.1248T>C1.000
rpsA1834792c.1251G>C1.000
rpsA1834852c.1311C>G1.000
tlyA1917943p.Ala2Ser1.000
tlyA1917951c.12T>G1.000
tlyA1917972c.33A>G1.000
tlyA1917981c.42G>C1.000
tlyA1917990c.51G>T1.000
tlyA1917993c.54A>G1.000
tlyA1917996c.57A>G1.000
tlyA1917999c.60T>C1.000
tlyA1918002c.63A>G1.000
tlyA1918015c.76T>C1.000
tlyA1918036p.Arg33Ser1.000
tlyA1918048p.Leu37Met1.000
tlyA1918056c.117G>C1.000
tlyA1918057p.Val40Arg1.000
tlyA1918067p.Ala43Gly1.000
tlyA1918398c.459C>G1.000
tlyA1918417c.478T>C1.000
tlyA1918420p.Ala161Cys1.000
tlyA1918425c.486C>G1.000
tlyA1918434c.495C>G1.000
tlyA1918442p.Val168Ala1.000
tlyA1918446c.507A>C1.000
tlyA1918459p.Asp174His1.000
tlyA1918464c.525C>G1.000
tlyA1918476c.537A>C1.000
tlyA1918477p.Leu180Met1.000
tlyA1918506c.567A>G1.000
tlyA1918518c.579C>G1.000
katG2155847p.Pro89Asp1.000
pncA2289074c.168G>A1.000
kasA2518459c.345T>C1.000
kasA2518462c.348A>C1.000
kasA2518468c.354A>T1.000
kasA2518475c.361A>C1.000
kasA2518480c.366T>C1.000
kasA2518483c.369C>G1.000
kasA2518504c.390T>C1.000
kasA2518506p.Ala131Glu1.000
kasA2518519c.405G>C1.000
kasA2518528c.414C>G1.000
kasA2518540c.426T>G1.000
kasA2518561c.447T>C1.000
kasA2518567c.453G>C1.000
kasA2518570c.456G>C1.000
kasA2518574p.Ile154Val1.000
kasA2518588c.474T>C1.000
kasA2518591c.477G>C1.000
kasA2518609p.Met165Ile1.000
kasA2518621c.507G>A1.000
kasA2518642c.528A>G1.000
kasA2518663c.549T>C1.000
kasA2518672c.558G>C1.000
kasA2518696c.582C>G1.000
kasA2518702c.588C>T1.000
kasA2518711c.597A>G1.000
kasA2518714c.600A>C1.000
kasA2518717c.603C>T1.000
kasA2518732c.618C>G1.000
kasA2518768c.654C>G1.000
kasA2518783c.669T>C1.000
kasA2518792c.678C>G1.000
kasA2518795c.681C>G1.000
kasA2518822c.708C>G1.000
kasA2518825c.711T>C1.000
kasA2518855c.741C>G1.000
kasA2518864c.750G>C1.000
kasA2518879c.765A>G1.000
kasA2518885c.771T>C1.000
kasA2518898c.784T>C1.000
kasA2518906c.792A>G1.000
kasA2518910p.Leu266Met1.000
kasA2518921c.807T>C1.000
kasA2518927c.813C>G1.000
kasA2518930c.816G>C1.000
kasA2519053c.939G>C1.000
kasA2519062c.948T>G1.000
kasA2519068c.954C>T1.000
kasA2519072p.Ala320Thr1.000
kasA2519077c.963G>C1.000
kasA2519095c.981C>G1.000
kasA2519098c.984C>G1.000
kasA2519104c.990T>A1.000
kasA2519108p.Asp332Gln1.000
kasA2519111p.Gln333Glu1.000
kasA2519116c.1002C>G1.000
kasA2519125c.1011C>T1.000
kasA2519137c.1023T>C1.000
kasA2519146c.1032C>A1.000
kasA2519167c.1053T>C1.000
kasA2519173c.1059C>G1.000
kasA2519176c.1062G>A1.000
kasA2519197c.1083G>C1.000
kasA2519215c.1101C>T1.000
kasA2519221c.1107G>C1.000
kasA2519225c.1111C>T1.000
kasA2519323c.1209G>C1.000
kasA2519329c.1215C>T1.000
ahpC2726288c.96C>T1.000
ahpC2726303c.111T>C1.000
ahpC2726312c.120T>C1.000
ahpC2726315p.Asp41Glu1.000
ahpC2726318p.Glu42Asp1.000
ahpC2726322p.Pro44Ala1.000
ahpC2726336c.144G>C1.000
ahpC2726348c.156T>C1.000
ahpC2726354c.162G>C1.000
ahpC2726357c.165A>G1.000
ahpC2726366c.174G>C1.000
ahpC2726372c.180G>C1.000
ahpC2726378c.186T>C1.000
ahpC2726390c.198G>C1.000
ahpC2726391p.Ala67Thr1.000
ahpC2726397p.Ser69Gly1.000
ahpC2726408c.216T>C1.000
ahpC2726528c.336C>G1.000
ahpC2726546c.354C>G1.000
ahpC2726551p.Gln120Leu1.000
ahpC2726556p.Ala122Thr1.000
ahpC2726564c.372C>T1.000
ahpC2726579c.387T>C0.949
ahpC2726591c.399C>G1.000
ahpC2726593p.Val134Ala1.000
ahpC2726600c.408T>C1.000
ahpC2726612c.420C>G1.000
ahpC2726638p.Ala149Val1.000
ahpC2726645c.453C>G1.000
ahpC2726657c.465A>C1.000
ahpC2726669p.Asp159Glu1.000
ahpC2726672c.480G>A1.000
ahpC2726681c.489A>G1.000
ahpC2726687c.495C>G1.000
ahpC2726693c.501C>G1.000
ahpC2726696c.504C>G1.000
ahpC2726717c.525A>G1.000
ahpC2726735c.543C>T1.000
folC2746183c.1416A>C1.000
folC2746531c.1068C>G1.000
folC2746555c.1044C>A1.000
folC2746561c.1038G>T0.900
folC2746936c.663A>G1.000
folC2746948c.651C>G1.000
folC2746974p.Ile209Leu1.000
folC2746980p.Ala207His1.000
folC2746981c.618A>G1.000
folC2746984c.615G>C1.000
folC2746987c.612A>G1.000
folC2746999c.600A>G1.000
folC2747002c.597A>G1.000
folC2747007c.592C>G1.000
folC2747023c.576G>C1.000
folC2747032c.567T>G1.000
folC2747040p.Ile187Val1.000
folC2747059c.540A>G1.000
folC2747065c.534G>C1.000
folC2747086c.513T>G1.000
folC2747089c.510C>G1.000
folC2747098c.501G>C1.000
folC2747101c.498C>G1.000
folC2747107c.492C>G1.000
folC2747110c.489A>G1.000
folC2747113c.486G>C1.000
folC2747116c.483C>G1.000
folC2747264p.Gly112Ala1.000
folC2747275c.324A>G1.000
folC2747281c.318T>C1.000
folC2747289p.Pro104Ala1.000
folC2747290c.309T>G1.000
folC2747293c.306C>T1.000
folC2747302c.297T>C1.000
folC2747314c.285T>G1.000
folC2747317c.282G>C1.000
folC2747355p.Val82Ile1.000
folC2747359c.240G>C1.000
folC2747362c.237C>G1.000
folC2747394p.Ile69Val0.923
folC2747395c.204A>G1.000
folC2747401c.198C>G1.000
folC2747407c.192A>G1.000
folC2747412p.Ser63Ala1.000
folC2747416c.183T>C1.000
folC2747419c.180G>C1.000
folC2747430c.169G>A1.000
folC2747439p.Met54Leu1.000
folC2747442c.157A>G1.000
folC2747443c.156C>T1.000
folC2747464c.135C>G1.000
folC2747467p.Asp44Glu1.000
folC2747475p.Arg42Lys1.000
folC2747491c.108T>C1.000
folC2747497c.102G>C1.000
folC2747500c.99T>C1.000
folC2747503c.96A>G1.000
folC2747506c.93C>T1.000
folC2747509c.90A>G1.000
folC2747523p.Ser26Ala1.000
folC2747524c.75C>G1.000
folC2747539c.60A>G1.000
ribD2987558c.720T>C1.000
ribD2987561c.723C>G1.000
ribD2987564c.726T>C1.000
ribD2987567c.729C>G1.000
ribD2987570c.732C>G1.000
ribD2987580p.Ser248Ala1.000
thyX3067199c.747T>C1.000
thyX3067205c.741C>G1.000
thyX3067210c.736A>G1.000
thyX3067220c.726C>G1.000
thyX3067223c.723C>G1.000
thyX3067244c.702G>C1.000
thyX3067249p.Thr233Ala1.000
thyX3067252p.Val232Ile1.000
thyX3067277c.669G>C1.000
thyX3067280c.666C>G1.000
thyX3067284p.Ala221Asp1.000
thyX3067286c.660G>C1.000
thyX3067289c.657G>C1.000
thyX3067293p.Gln218Arg1.000
thyX3067304c.642T>C1.000
thyX3067316c.630T>C1.000
thyX3067325c.621T>C1.000
thyX3067355c.591T>G1.000
thyX3067367c.579C>G1.000
thyX3067376c.570C>G1.000
thyX3067391c.555C>G1.000
thyX3067394c.552C>G1.000
thyX3067412c.534G>C1.000
thyX3067430c.516G>C1.000
thyX3067439c.507T>C1.000
thyX3067451c.495C>T1.000
thyX3067457c.489G>C1.000
thyX3067465p.Ile161Val1.000
thyX3067466c.480C>G1.000
thyX3067470p.Asn159Ser1.000
thyX3067493c.453T>C1.000
thyX3067500p.Lys149Arg1.000
thyX3067515p.Ser144Thr1.000
thyX3067526c.420G>C0.929
thyX3067531p.Ala139Ser0.897
thyX3067545p.Glu134Ala1.000
thyX3067549p.Thr133Ala1.000
thyX3067556p.His130Gln1.000
thyX3067560p.Arg129Gln0.724
thyX3067565p.Asp127Glu0.724
thyX3067570p.Ala126Pro0.733
thyX3067571c.375G>A0.733
thyX3067577p.Glu123Asp0.733
thyX3067582p.Met122Leu1.000
thyX3067586c.360G>C1.000
thyX3067601c.345C>G1.000
thyX3067604c.342C>G1.000
thyX3067610p.Lys112Asn1.000
thyX3067613c.333C>T1.000
thyX3067619c.327T>G1.000
thyX3067640c.306C>G1.000
thyX3067643c.303G>A1.000
thyX3067652c.294A>G1.000
thyX3067661c.285G>C1.000
thyX3067682c.264C>G1.000
thyX3067685c.261T>C1.000
thyX3067688c.258C>G1.000
thyX3067694c.252C>G1.000
thyX3067718c.228G>C1.000
thyX3067721c.225A>G1.000
thyX3067724c.222C>T1.000
thyX3067727c.219T>G1.000
thyX3067739c.207A>G1.000
thyX3067742c.204T>G1.000
thyX3067762p.Arg62Lys1.000
thyX3067765p.Leu61Ile1.000
thyX3067781c.165G>C1.000
thyX3067787c.159C>T1.000
thyX3067793c.153A>G1.000
thyX3067799c.147C>T1.000
thyX3067802c.144G>C1.000
thyX3067814c.132A>G1.000
thyX3067826c.120G>C1.000
thyX3067850c.96T>G1.000
thyX3067869p.Thr26Ser0.846
thyX3067874c.72G>C0.833
thyX3067883c.63G>C0.941
thyX3067886c.60T>G1.000
thyX3067889c.57G>C0.889
thyX3067894c.52A>G1.000
thyX3067935p.Thr4Ile1.000
thyA3073800c.672C>G1.000
thyA3073812c.660G>C1.000
thyA3073824c.648T>G1.000
thyA3073827c.645T>C1.000
thyA3073839c.633A>G1.000
thyA3073863c.609A>G1.000
thyA3073874p.Ile200Val1.000
thyA3073878c.594C>T1.000
thyA3073892c.580A>G0.966
thyA3073893c.579G>C0.966
thyA3073902c.570G>C1.000
thyA3073925c.547A>G1.000
thyA3073926c.546C>G1.000
thyA3073929c.543A>G1.000
thyA3073953c.519A>G1.000
thyA3073977c.495T>C1.000
thyA3073989c.483A>G1.000
thyA3074001c.471G>C1.000
thyA3074004c.468A>G1.000
thyA3074010c.462G>C1.000
thyA3074031c.441A>G1.000
thyA3074037c.435G>C1.000
thyA3074057p.Glu139Pro1.000
thyA3074061c.411T>C1.000
thyA3074076c.396G>C1.000
thyA3074088c.384G>A1.000
thyA3074097c.375G>C1.000
thyA3074100c.372A>G1.000
thyA3074106c.366A>G1.000
thyA3074117c.355G>A1.000
thyA3074120c.352A>G1.000
thyA3074130c.342C>G1.000
thyA3074157c.315G>C1.000
thyA3074160c.312T>C1.000
thyA3074165p.Ala103Thr1.000
thyA3074172c.300C>G1.000
thyA3074175c.297T>C1.000
thyA3074181c.291T>C1.000
thyA3074184c.288T>C1.000
thyA3074187c.285A>G1.000
thyA3074199c.273C>T1.000
thyA3074205p.Glu89Asp1.000
thyA3074214c.258A>G1.000
thyA3074217c.255A>G1.000
thyA3074235c.237G>T1.000
thyA3074244c.228T>G1.000
thyA3074252p.Glu74Arg1.000
thyA3074254p.His73Arg1.000
thyA3074263p.Gly70Asp1.000
thyA3074267p.Ile69Val1.000
thyA3074268c.204A>G1.000
thyA3074274c.198A>G1.000
thyA3074286c.186A>G1.000
thyA3074297c.175G>A1.000
thyA3074301c.171G>A1.000
thyA3074305p.Ala56Val1.000
thyA3074307c.165T>C1.000
thyA3074318p.Phe52Leu1.000
thyA3074322c.150G>C1.000
thyA3074325c.147T>C1.000
thyA3074334c.138A>G1.000
thyA3074339p.Leu45Ile1.000
thyA3074349c.123A>G1.000
thyA3074360c.112A>G1.000
thyA3074361c.111A>G1.000
thyA3074372p.Met34Leu1.000
thyA3074394c.78G>C1.000
thyA3074397c.75T>C1.000
thyA3074409c.63G>T1.000
ald3087557c.738A>C1.000
ald3087563p.Lys248Asn1.000
ald3087566c.747A>G1.000
ald3087567p.Val250Ile1.000
ald3087578c.759A>G1.000
ald3087590p.His257Gln1.000
ald3087596c.777A>G1.000
ald3087597p.Pro260Ser1.000
ald3087602c.783T>C1.000
ald3087608c.789A>G1.000
ald3087617c.798T>C1.000
ald3087620c.801A>C1.000
ald3087621p.Ala268Ser1.000
ald3087641c.822T>C1.000
ald3087647c.828A>G1.000
ald3087649p.Gly277Asp1.000
ald3087653c.834A>C1.000
ald3087656c.837A>G1.000
ald3087665c.846C>G0.895
ald3087666p.Tyr283His1.000
ald3087672p.His285Asp1.000
ald3087680c.861G>C1.000
ald3087699p.Leu294Val1.000
ald3087704c.885T>C1.000
ald3087726p.Ala303Ser1.000
ald3087729p.Ser304Ala1.000
ald3087737c.918G>C1.000
fbiA3640291c.-252T>C1.000
fbiA3640301c.-242GTTAAC>G1.000
fbiA3640307c.-236C>A1.000
fbiA3640347c.-196A>G1.000
fbiA3640349c.-194A>G1.000
fbiA3640350c.-193C>T1.000
fbiA3640365c.-178C>G1.000
fbiA3640562p.Ala7Val1.000
fbiA3640569c.27A>G1.000
fbiA3640572c.30C>T0.974
fbiA3640878c.336T>C1.000
fbiA3640899c.357G>C1.000
fbiA3640900p.Gln120Asn1.000
fbiA3640914c.372C>G1.000
fbiA3640918p.Ser126Thr1.000
fbiA3640931p.Glu130Ala1.000
fbiA3640935c.393C>G1.000
fbiA3640938c.396A>G1.000
fbiA3640944c.402T>C1.000
fbiA3640956c.414G>C1.000
alr3840215c.1206A>G1.000
alr3840230c.1191A>C1.000
alr3840233c.1188T>C1.000
alr3840236c.1185T>G1.000
alr3840239c.1182C>G1.000
alr3840248c.1173G>C1.000
alr3840274p.Val383Leu1.000
alr3840275c.1146A>C1.000
alr3840287c.1134G>A1.000
alr3840293c.1128A>G1.000
alr3840296c.1125C>G1.000
alr3840302c.1119C>T1.000
alr3840310p.Arg371Ser1.000
alr3840312p.Ile370Ser1.000
alr3840328c.1093A>G1.000
alr3840329c.1092A>G1.000
alr3840344c.1077T>C1.000
alr3840353c.1068A>G1.000
alr3840357p.Leu355Pro1.000
alr3840382p.Met347Val1.000
alr3840404c.1017C>G1.000
alr3840407c.1014C>G1.000
alr3840410c.1011A>G1.000
alr3840413c.1008G>C1.000
alr3840418p.Cys335Arg1.000
alr3840419c.1002T>C1.000
alr3840424c.997T>C1.000
alr3840436p.Leu329Ser1.000
alr3840442p.Glu327Gln1.000
alr3840469p.Val318Ile1.000
alr3840476c.945T>G1.000
alr3840482c.939A>G1.000
alr3840487p.Ile312Val1.000
alr3840503c.918A>G1.000
alr3840516p.Pro302Gln1.000
alr3840522p.Ile300Thr1.000
alr3840527c.894T>G1.000
alr3840533c.888C>T1.000
alr3840536c.885A>G1.000
alr3840539c.882C>T1.000
alr3840547p.Gly292Ser1.000
alr3840548c.873C>T1.000
alr3840560c.861A>T1.000
alr3840566c.855T>C1.000
alr3840575c.846C>T1.000
alr3840578c.843A>C1.000
alr3840583p.Ala280Thr1.000
alr3840593c.828G>C1.000
alr3840602c.819C>G1.000
alr3840611c.810C>G1.000
alr3840926c.495A>G1.000
alr3840944c.477A>G1.000
alr3840947c.474C>G1.000
alr3840959c.462C>G1.000
alr3840965c.456C>G1.000
alr3840968c.453C>G1.000
alr3840982p.Arg147Asp1.000
alr3840994p.His143Thr1.000
alr3840997c.424A>G1.000
alr3841001c.420T>C1.000
alr3841010c.411T>C1.000
alr3841017p.Leu135Gln1.000
alr3841027p.Val132Leu1.000
alr3841029p.Ala131Gly1.000
alr3841033p.Val130Ile1.000
alr3841041p.Asp127Gly1.000
alr3841060p.Gly121Arg1.000
alr3841100c.321T>C1.000
alr3841104p.Thr106Ser1.000
alr3841106c.315A>G1.000
alr3841109c.312G>C1.000
alr3841113p.Asp103Ala1.000
alr3841115c.306A>G1.000
alr3841127c.294T>C1.000
alr3841148c.273G>C1.000
alr3841208c.213A>G1.000
alr3841232c.189C>G1.000
alr3841240p.Leu61Val1.000
alr3841249p.His58Gly1.000
alr3841252p.Gly57Arg1.000
alr3841256p.His55Gln1.000
alr3841264p.Arg53Cys1.000
alr3841270p.Val51Leu1.000
alr3841283c.138T>C1.000
alr3841286c.135A>G1.000
alr3841289c.132A>G1.000
alr3841298c.123A>G1.000
alr3841301c.120C>G1.000
alr3841306p.Met39Leu1.000
alr3841307c.114G>C1.000
panD4044057c.225G>T1.000
panD4044072c.210G>C1.000
panD4044075c.207A>G1.000
panD4044081c.201A>C1.000
panD4044084c.198A>G1.000
panD4044090c.192G>A1.000
panD4044093c.189T>C1.000
panD4044096c.186G>A1.000
panD4044120c.162T>C1.000
panD4044123c.159A>G1.000
panD4044126c.156A>G1.000
panD4044138c.144A>G1.000
panD4044150c.132T>C1.000
panD4044162c.120T>C1.000
panD4044165c.117C>G1.000
panD4044188c.94A>G1.000
panD4044195c.87A>G1.000
panD4044213c.69G>C1.000
panD4044237c.45C>G1.000
panD4044240c.42C>G1.000
panD4044246c.36G>C1.000
panD4044264c.18C>G1.000
embC4240078c.216A>G1.000
embC4240087c.225T>C1.000
embC4240090c.228C>T1.000
embC4240105c.243C>T1.000
embC4240123c.261C>G1.000
embC4240141c.279A>G1.000
embC4240155p.Gln98Pro1.000
embC4240160p.Thr100Ala1.000
embC4240183c.321A>G1.000
embC4240204c.342T>C1.000
embC4240210c.348C>G1.000
embC4240216c.354T>C1.000
embC4240229p.Leu123Ile1.000
embC4240232p.Gln124Val1.000
embC4240258c.396T>G1.000
embC4240267c.405T>C1.000
embC4240270c.408T>C1.000
embC4240277p.Leu139Val1.000
embC4240282c.420C>G1.000
embC4240285c.423C>G1.000
embC4240297c.435T>C1.000
embC4240306c.444C>G1.000
embC4240313p.Thr151Ala1.000
embC4240318c.456T>C1.000
embC4240330c.468A>C1.000
embC4240405c.543T>C1.000
embC4240408c.546A>G1.000
embC4240420c.558T>C1.000
embC4240424p.Arg188Lys1.000
embC4240435c.573C>T1.000
embC4240444c.582C>G1.000
embC4240459c.597G>C1.000
embC4240462c.600G>C1.000
embC4240475p.Ala205Ser1.000
embC4240480c.618G>A1.000
embC4240489c.627A>G1.000
embC4240495c.633T>C1.000
embC4240512p.Ser217Thr1.000
embC4240514p.Val218Ile1.000
embC4240519c.657T>C1.000
embC4240543c.681G>C1.000
embC4240561c.699C>G1.000
embC4240578p.Ala239Val0.538
embC4240582c.720C>G0.538
embC4240585c.723C>G0.538
embC4240591c.729C>G0.538
embC4240594c.732C>G0.538
embC4240600c.738G>C0.833
embC4240642c.780G>C1.000
embC4240645c.783G>C1.000
embC4240657c.795G>C0.636
embC4240671p.Thr270Ile0.619
embC4240678c.816T>G1.000
embC4240693c.831T>C1.000
embC4240706p.Val282Thr1.000
embC4240726c.864G>C1.000
embC4240780c.918T>C1.000
embC4240783c.921G>C1.000
embC4240789c.927T>C1.000
embC4240819c.957A>G1.000
embC4240825c.963G>A1.000
embC4240831c.969T>G1.000
embC4240867c.1005T>G1.000
embC4240870c.1008T>C1.000
embC4240879c.1017G>C1.000
embC4240880p.Ala340Thr1.000
embC4240885c.1023T>C1.000
embC4240897c.1035C>G1.000
embC4240900c.1038A>G1.000
embC4240919c.1057C>T1.000
embC4240936c.1074A>G1.000
embC4240951c.1089C>G1.000
embC4240954p.Ile364Met1.000
embC4240957c.1095C>G1.000
embC4240966c.1104G>T1.000
embC4240979p.Thr373Gln1.000
embC4240983p.Ser374Asn1.000
embC4240990c.1128A>G1.000
embC4241017c.1155T>C1.000
embC4241023c.1161T>G1.000
embC4241026c.1164C>G1.000
embC4241035c.1173G>A1.000
embC4241050c.1188T>G1.000
embC4241104c.1242G>A1.000
embC4241107c.1245G>C1.000
embC4241137c.1275G>C1.000
embC4241140c.1278A>G1.000
embC4241141p.Ile427Val1.000
embC4241158c.1296T>C1.000
embC4241161c.1299C>G1.000
embC4241162c.1300T>C1.000
embC4241203c.1341T>C1.000
embC4241230c.1368A>G1.000
embC4241233c.1371G>C1.000
embC4241236c.1374C>G1.000
embC4241314c.1452G>C0.265
embC4241319p.Pro486Leu0.265
embC4241374c.1512T>C1.000
embC4241380c.1518A>C1.000
embC4241394p.Lys511Ser1.000
embC4241443c.1581C>G1.000
embC4241449c.1587C>G1.000
embC4241453p.Ile531Val1.000
embC4241479c.1617C>G1.000
embC4241480c.1618T>C1.000
embC4241488c.1626G>C0.857
embC4241560c.1698C>G1.000
embC4241567p.Ile569Val1.000
embC4241572c.1710C>G1.000
embC4241578c.1716G>C1.000
embC4241584c.1722T>C1.000
embC4241587c.1725C>G1.000
embC4241591p.Leu577Val1.000
embC4241611c.1749G>C1.000
embC4241614c.1752A>C1.000
embC4241617c.1755G>A1.000
embC4241623c.1761C>G1.000
embC4241626c.1764T>C1.000
embC4241644c.1782G>C1.000
embC4241648c.1786T>C1.000
embC4241657p.Ser599Pro1.000
embC4241665c.1803G>T1.000
embC4241671c.1809T>G1.000
embC4241689c.1827G>C1.000
embC4241691p.Gly610Ala1.000
embC4241695c.1833T>G1.000
embC4241704c.1842C>G1.000
embC4241707c.1845G>C1.000
embC4241713c.1851G>C0.938
embC4241719c.1857G>C1.000
embC4241725c.1863G>C1.000
embC4241727p.Phe622Tyr1.000
embC4241741p.Val627Leu1.000
embC4241746c.1884C>T1.000
embC4241747p.Val629Leu1.000
embC4241750p.Leu630Val1.000
embC4241755c.1893C>G1.000
embC4241770c.1908T>C1.000
embC4241791c.1929G>C1.000
embC4241794c.1932C>G1.000
embC4241797c.1935C>T1.000
embC4241809c.1947A>G1.000
embC4242244c.2382C>G0.692
embC4242245p.Thr795Arg0.615
embC4242710p.Gln950Glu1.000
embC4242715c.2853T>C1.000
embC4242721c.2859G>C1.000
embC4242730c.2868C>T1.000
embC4242823c.2961G>C1.000
embC4242832c.2970A>C1.000
embC4242844c.2982A>G1.000
embC4242847c.2985C>G1.000
embC4242859c.2997C>T1.000
embC4242862c.3000A>G1.000
embC4242863p.Tyr1001Asn1.000
embC4242871c.3009C>G1.000
embA4243763c.531G>C0.636
embA4243787c.555G>T1.000
embA4243811c.579T>C1.000
embA4243817c.585T>C1.000
embA4244267c.1035G>C1.000
embA4244276c.1044A>C1.000
embA4244284p.Pro351Arg1.000
embA4244298p.Ser356Ala1.000
embA4244309c.1077C>G1.000
embA4244312c.1080T>G1.000
embA4244315c.1083G>C1.000
embA4244324c.1092T>G1.000
embA4244327c.1095T>C1.000
embA4244337p.Leu369Val1.000
embA4244340p.Ser370Ala1.000
embA4244366c.1134C>G1.000
embA4244372c.1140T>G1.000
embA4244378c.1146G>A1.000
embA4244396c.1164T>C1.000
embA4244408c.1176G>C1.000
embA4244412p.Val394Met1.000
embA4244415c.1183T>C1.000
embA4244427p.Ser399Ala1.000
embA4244567c.1335C>G1.000
embA4244576c.1344G>C1.000
embA4244578p.Thr449Ser1.000
embA4244582c.1350T>C1.000
embA4244585c.1353A>T1.000
embA4244612c.1380C>G0.895
embA4244619c.1387T>C1.000
embA4244885c.1653A>G1.000
embA4244897c.1665T>C1.000
embA4244900c.1668G>C1.000
embA4244903c.1671G>C1.000
embA4244919c.1687C>T1.000
embA4244933c.1701A>G1.000
embA4244945c.1713C>G1.000
embA4244948c.1716G>C1.000
embA4244960c.1728A>C0.875
embA4245038c.1806C>T1.000
embA4245056c.1824C>G1.000
embA4245077c.1845G>C1.000
embA4245083c.1851A>C1.000
embA4245089c.1857G>C1.000
embA4245092c.1860C>G1.000
embA4245101c.1869G>C1.000
embA4245137c.1905T>C1.000
embA4245149c.1917C>G1.000
embA4245182c.1950T>C1.000
embA4245194c.1962G>C1.000
embA4245198p.Leu656Ile1.000
embA4245206c.1974A>G1.000
embA4245207c.1975T>C1.000
embA4245215c.1983A>G1.000
embA4245222p.Tyr664Gln1.000
embA4245245c.2013C>G1.000
embA4245248c.2016G>C1.000
embA4245257c.2025A>G1.000
embA4245263c.2031A>G1.000
embA4245268p.Asn679Ser1.000
embA4245315p.Val695Thr0.818
embA4245355p.Ala708Gly1.000
embA4245368c.2136T>C1.000
embA4245557p.Glu775Asp1.000
embA4245569p.Glu779Asp1.000
embA4245575c.2343C>G1.000
embA4245576p.Lys782Gln1.000
embA4245587c.2355G>C1.000
embA4245593c.2361C>G1.000
embA4245594p.Ser788Thr1.000
embA4245599c.2367A>G1.000
embA4245620c.2388T>C1.000
embA4245623c.2391G>C1.000
embA4245626c.2394G>C1.000
embA4245643p.Ala804Val1.000
embA4245648p.Ile806Tyr1.000
embA4245652p.Thr807Ser1.000
embA4245659c.2427C>G1.000
embA4245674c.2442A>C1.000
embA4245677c.2445G>C1.000
embA4245683c.2451C>G1.000
embA4245689c.2457C>G1.000
embA4245701c.2469G>C1.000
embA4245725c.2493A>C1.000
embA4245726c.2494T>C1.000
embA4245737c.2505A>C1.000
embA4245740c.2508T>C1.000
embA4245764c.2532G>C1.000
embA4245771p.Asn847Ser1.000
embA4245807c.2575T>C1.000
embA4245820p.Ser863Thr0.842
embA4245830c.2598G>C0.920
embA4245845c.2613T>G1.000
embA4245848c.2616C>G1.000
embA4245860c.2628C>G1.000
embA4245885p.Asp885Thr1.000
embA4245892p.Ile887Thr1.000
embA4245905c.2673C>G1.000
embA4245927p.Thr899Ala1.000
embA4245930p.Gly900Arg1.000
embA4245983c.2751A>C1.000
embA4245989c.2757A>G1.000
embA4245992c.2760C>G1.000
embA4246010c.2778G>C1.000
embA4246013c.2781T>C1.000
embA4246041p.Asp937Asn1.000
embA4246055c.2823T>C1.000
embA4246064c.2832T>C1.000
embA4246079c.2847C>T1.000
embA4246080p.Pro950Ser1.000
embA4246088c.2856A>G1.000
embA4246097c.2865C>G1.000
embA4246109c.2877C>G1.000
embA4246115c.2883T>G1.000
embA4246164p.Leu978Met1.000
embA4246184c.2952A>G1.000
embA4246187c.2955C>G1.000
embA4246196c.2964C>G1.000
embA4246250c.3018G>C1.000
embA4246264p.His1011Arg1.000
embA4246274c.3042G>C1.000
embA4246292c.3060A>G1.000
embA4246308c.3077 3078insAG1.000
embB4246603c.90C>G1.000
embB4246621c.108T>C1.000
embB4246624c.111C>G1.000
embB4246627c.114T>C1.000
embB4246631c.118T>C0.579
embB4246639c.126G>C0.579
embB4246642c.129G>C0.579
embB4246645c.132G>C0.579
embB4246882c.369G>C1.000
embB4247059c.546C>G1.000
embB4247062c.549G>C1.000
embB4247068c.555T>C1.000
embB4247074c.561G>C1.000
embB4247101c.588G>C0.400
embB4247105p.Pro198Ala0.429
embB4247110c.597G>C0.429
embB4247125c.612G>A1.000
embB4247140c.627G>A1.000
embB4247317c.804G>C1.000
embB4247326c.813A>G1.000
embB4247328p.Ser272Asn1.000
embB4247338c.825C>G1.000
embB4247348p.Thr279Ala1.000
embB4247355p.Ala281Val1.000
embB4247358p.Val282Ala1.000
embB4247365c.852A>C1.000
embB4247371c.858C>G1.000
embB4247375p.Leu288Val1.000
embB4247386c.873T>C1.000
embB4247389c.876C>G1.000
embB4247395c.882C>G1.000
embB4247401c.888T>C1.000
embB4247437c.924A>G1.000
embB4247440c.927C>G1.000
embB4247464c.951C>G1.000
embB4247470c.957T>C1.000
embB4247491c.978G>C1.000
embB4247497c.984T>C1.000
embB4247500c.987C>G1.000
embB4247512c.999T>C1.000
embB4247536c.1023C>G1.000
embB4247554c.1041T>C1.000
embB4247566c.1053C>G1.000
embB4247567c.1054C>T1.000
embB4247572c.1059A>G1.000
embB4247579p.Ala356Phe1.000
embB4247587c.1074G>A1.000
embB4247603c.1090C>T1.000
embB4247611c.1098G>C1.000
embB4247614c.1101T>C1.000
embB4247629c.1116C>G1.000
embB4247632c.1119C>G1.000
embB4247635c.1122G>A1.000
embB4247683c.1170C>G1.000
embB4247692c.1179C>G1.000
embB4247716c.1203C>G1.000
embB4247722c.1209G>C1.000
embB4247725c.1212G>C1.000
embB4247729p.Gly406Pro1.000
embB4247743c.1230C>G1.000
embB4247746c.1233C>A1.000
embB4247776c.1263G>T1.000
embB4247779c.1266C>G1.000
embB4247785c.1272G>C1.000
embB4247800c.1287A>C1.000
embB4247806c.1293G>C0.970
embB4247819p.Val436Ile1.000
embB4247824c.1311C>G1.000
embB4247830c.1317A>C1.000
embB4247836c.1323A>G1.000
embB4247842c.1329T>C1.000
embB4247857c.1344C>G1.000
embB4247876c.1363C>T0.692
embB4247881c.1368G>C0.692
embB4247887c.1374C>T1.000
embB4247890c.1377C>T1.000
embB4247899p.Met462Ile1.000
embB4247905c.1392G>C1.000
embB4247909c.1396T>C1.000
embB4247914c.1401G>C1.000
embB4247920c.1407T>G1.000
embB4247923c.1410T>C1.000
embB4247926c.1413C>G1.000
embB4247927p.Leu472Val1.000
embB4247932c.1419C>G1.000
embB4247938c.1425G>C1.000
embB4247940p.Leu476Trp1.000
embB4247945c.1432T>C1.000
embB4247951p.Ser480Ala1.000
embB4247956c.1443G>C1.000
embB4247974c.1461C>G1.000
embB4247977c.1464C>G1.000
embB4247986c.1473C>G1.000
embB4248007c.1494C>G1.000
embB4248011p.Ser500Ala1.000
embB4248035p.Val508Ile1.000
embB4248041p.Ala510Thr1.000
embB4248044p.Lys511Ala1.000
embB4248052c.1539G>A1.000
embB4248055c.1542G>A1.000
embB4248064c.1551G>C1.000
embB4248070c.1557T>C1.000
embB4248085c.1572T>C1.000
embB4248097c.1584C>G1.000
embB4248118c.1605T>C1.000
embB4248127c.1614G>C1.000
embB4248133c.1620C>G1.000
embB4248142c.1629T>C1.000
embB4248143c.1630T>C1.000
embB4248157c.1644A>G1.000
embB4248206p.Ser565Gly1.000
embB4248220c.1707A>G1.000
embB4248241c.1728C>T1.000
embB4248265c.1752C>T1.000
embB4248266c.1753C>T1.000
embB4248277c.1764G>C1.000
embB4248304c.1791G>C1.000
embB4248316c.1803C>G1.000
embB4248319c.1806A>G1.000
embB4248322c.1809G>C0.920
embB4248343c.1830G>C1.000
embB4248346c.1833G>C1.000
embB4248350c.1837T>C1.000
embB4248355c.1842A>G1.000
embB4248358c.1845C>G1.000
embB4248361c.1848A>G1.000
embB4248362p.Ser617Ala1.000
embB4248398c.1885C>T1.000
embB4248403c.1890G>C1.000
embB4248407c.1894T>C1.000
embB4248410p.Phe633Leu1.000
embB4248416p.Leu635Met1.000
embB4248419p.Leu636Met1.000
embB4248425c.1912T>C1.000
embB4248430c.1917T>C1.000
embB4248432p.Trp640Phe1.000
embB4248460c.1947C>G1.000
embB4248472c.1959T>G1.000
embB4248504p.Asp664Gly1.000
embB4248508c.1995G>A1.000
embB4248514c.2001A>G1.000
embB4248524p.Ile671Val1.000
embB4248668p.Val719Ile1.000
embB4248676c.2163C>G1.000
embB4248688c.2175G>C1.000
embB4248694c.2181G>C1.000
embB4248697c.2184A>C1.000
embB4248706c.2193G>C1.000
embB4248720p.Gly736Ala1.000
embB4248725p.Ser738Asp1.000
embB4248731p.Val740Leu1.000
embB4248736c.2223G>C1.000
embB4248738p.Ala742Glu1.000
embB4248742c.2229T>C1.000
embB4248743p.Val744Ser1.000
embB4248772c.2259A>G1.000
embB4248961c.2448T>C1.000
embB4249138c.2625C>G1.000
embB4249153c.2640G>T1.000
embB4249255c.2742G>C1.000
embB4249259p.Met916Leu1.000
embB4249268p.Asp919Tyr1.000
embB4249276c.2763A>G1.000
embB4249282c.2769A>C1.000
embB4249297c.2784G>C1.000
embB4249321c.2808A>C1.000
embB4249322p.Ala937Ser1.000
embB4249325p.Lys938Asp1.000
embB4249336c.2823C>G1.000
embB4249339c.2826T>C1.000
embB4249340p.Ala943Thr1.000
embB4249345c.2832C>G1.000
embB4249348c.2835G>C1.000
embB4249351c.2838C>G1.000
embB4249369c.2856T>C1.000
embB4249381c.2868A>G1.000
embB4249417c.2904A>G1.000
embB4249420c.2907G>C1.000
embB4249423p.Asp970Glu1.000
embB4249424p.Leu971Met1.000
embB4249432c.2919A>G1.000
embB4249441c.2928A>G1.000
embB4249444c.2931T>C1.000
embB4249447c.2934G>C1.000
embB4249456c.2943G>C1.000
embB4249469p.Leu986Met1.000
embB4249483c.2970C>G1.000
embB4249486c.2973T>G1.000
embB4249487c.2974T>C1.000
embB4249498c.2985G>C1.000
embB4249521p.Ala1003Val1.000
embB4249525c.3012T>C1.000
embB4249528c.3015C>G1.000
embB4249529p.Ile1006Val1.000
embB4249532p.Ala1007Thr1.000
embB4249537c.3024A>G1.000
embB4249543c.3030G>C1.000
embB4249558c.3045A>C1.000
embB4249564c.3051C>T1.000
embB4249568p.Ser1019Thr1.000
embB4249573c.3060T>C1.000
embB4249580p.Leu1023Met1.000
embB4249594c.3081G>C1.000
embB4249600c.3087A>G1.000
embB4249609c.3096T>C1.000
embB4249615c.3102C>G1.000
ethA4326304c.1170G>C1.000
ethA4326307c.1167G>T1.000
ethA4326310c.1164A>G1.000
ethA4327390c.84C>G1.000
ethA4327396c.78A>G1.000
ethA4327401p.Asp25Asn1.000
ethA4327417c.57C>G1.000
ethA4327420c.54G>A1.000
ethA4327423c.51G>C1.000
ethA4327426c.48A>G1.000
ethA4327438c.36A>G1.000
gid4407603c.600C>T1.000
gid4407609c.594C>G1.000
gid4407652p.Val184Ala1.000
gid4407654c.549C>G1.000
gid4407667p.Ile179Thr1.000

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
This tool is for Research Use Only and is offered free for use. The London School of Hygiene and Tropical Medicine shall have no liability for any loss or damages of any kind, however sustained relating to the use of this tool.
© 2019 London School of Hygiene and Tropical Medicine;