TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
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Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5d9ef3d22a950
Sample: 5d9ef3d22a950

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Summary
ID: 5d9ef3d22a950
Date: Thu Oct 10 10:06:00 2019
Strain: lineage4.7;lineage4.1.2;lineage4.1.1
Drug-resistance: Drug-resistant

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkasA p.Met77Ile (1.00)
Rifampicin
EthambutolRembA p.Gly321Ser (1.00), embB p.Tyr384Asn (1.00)
Pyrazinamide
StreptomycinRrrs r.462c>t (1.00)
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.1Euro-American (X-type)X1;X2;X3None

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB5788c.549G>C1.000
gyrB5803c.564A>G1.000
gyrB5806c.567C>G0.833
gyrB5809c.570C>G0.833
gyrB5812c.573C>G0.833
gyrB5815c.576C>G0.833
gyrB5818c.579G>C0.840
gyrB5824c.585A>G1.000
gyrB5848c.609G>C1.000
gyrB5863c.624G>C1.000
gyrB5873c.634A>C1.000
gyrB5878c.639G>C1.000
gyrB5883p.Gln215Pro1.000
gyrB5992c.753T>C1.000
gyrB6001c.762G>C1.000
gyrB6004c.765T>C1.000
gyrB6007c.768C>T1.000
gyrB6008c.769C>T1.000
gyrB6013c.774G>C1.000
gyrB6016c.777C>T1.000
gyrB6022c.783G>C1.000
gyrB6025c.786A>G1.000
gyrB6086p.Thr283Ser1.000
gyrB6091c.852G>C1.000
gyrB6097c.858G>A1.000
gyrB6100c.861G>C1.000
gyrB6103c.864G>A1.000
gyrB6115c.876A>G1.000
gyrB6123p.Ala295Gly1.000
gyrB6127c.888G>C1.000
gyrB6130c.891T>C1.000
gyrB6133c.894G>C1.000
gyrB6172c.933C>T1.000
gyrB6178c.939C>T1.000
gyrB6181c.942C>A1.000
gyrB6184c.945C>G1.000
gyrB6193c.954G>A1.000
gyrB6205c.966C>T1.000
gyrB6209c.970C>T1.000
gyrB6214c.975G>C1.000
gyrB6238c.999G>A1.000
gyrB6242p.Arg335Lys1.000
gyrB6250c.1011A>G1.000
gyrB6253c.1014G>C1.000
gyrB6286c.1047T>C1.000
gyrB6292c.1053G>C1.000
gyrB6295c.1056A>G1.000
gyrB6298c.1059C>G1.000
gyrB6299c.1060C>T1.000
gyrB6307c.1068T>G1.000
gyrB6310c.1071G>C1.000
gyrB6320p.Lys361Arg1.000
gyrB6331c.1092A>G1.000
gyrB6346c.1107C>T1.000
gyrB6352c.1113C>A1.000
gyrB6362c.1123T>C1.000
gyrB6382c.1143A>G1.000
gyrB6391c.1152G>C1.000
gyrB6400c.1161C>T1.000
gyrB6403c.1164T>C1.000
gyrB6409c.1170A>G1.000
gyrB6415c.1176G>C1.000
gyrB6469c.1230T>G1.000
gyrB6472c.1233G>C1.000
gyrB6484c.1245A>G1.000
gyrB6487c.1248C>A1.000
gyrB6491p.Ile418Leu1.000
gyrB6496c.1257G>C1.000
gyrB6499c.1260A>G1.000
gyrB6502c.1263T>C1.000
gyrB6508c.1269A>G1.000
gyrB6526c.1287T>C1.000
gyrB6535c.1296C>A1.000
gyrB6541c.1302C>T1.000
gyrB6542p.Ile435Leu1.000
gyrB6550c.1311A>G1.000
gyrB6551c.1312T>C1.000
gyrB6559c.1320C>T1.000
gyrB6563c.1324C>T1.000
gyrB6571c.1332T>C1.000
gyrB6577c.1338T>C1.000
gyrB6580c.1341C>G1.000
gyrB6583c.1344G>A1.000
gyrB6598c.1359C>G1.000
gyrB6610c.1371C>G1.000
gyrB6613c.1374A>G1.000
gyrB6616c.1377A>G1.000
gyrB6625c.1386G>C1.000
gyrB6634c.1395T>C1.000
gyrB6637c.1398T>G1.000
gyrB6643c.1404A>G1.000
gyrB6646c.1407C>T1.000
gyrB6649c.1410T>C1.000
gyrB6673c.1434A>T1.000
gyrB6676c.1437T>G1.000
gyrB6703c.1464G>C1.000
gyrB6706c.1467G>A1.000
gyrB6709c.1470A>G1.000
gyrB6712c.1473G>A1.000
gyrB6724c.1485G>A1.000
gyrB6727c.1488G>C1.000
gyrB6730c.1491A>G1.000
gyrB6733c.1494G>A1.000
gyrB6739c.1500C>T1.000
gyrB6745c.1506T>C1.000
gyrB6760c.1521G>C1.000
gyrB6764c.1525C>T1.000
gyrB6769c.1530C>T1.000
gyrB6775c.1536G>T1.000
gyrB6778c.1539C>T1.000
gyrB6787c.1548G>A1.000
gyrB6793c.1554T>C0.385
gyrB6794p.Ile519Leu1.000
gyrB6797p.Gly520Cys0.385
gyrB6808c.1569C>G1.000
gyrB6811c.1572C>T1.000
gyrB6823c.1584G>C1.000
gyrB6824c.1585C>T1.000
gyrB6841c.1602T>C1.000
gyrB6844c.1605T>C1.000
gyrB6856c.1617T>C1.000
gyrB6859c.1620T>C1.000
gyrB6866c.1627C>T1.000
gyrB6877c.1638G>C1.000
gyrB6878c.1639T>C1.000
gyrB6889c.1650G>C1.000
gyrB6898c.1659G>T1.000
gyrB6904c.1665C>G1.000
gyrB6916c.1677G>C1.000
gyrB6919c.1680T>C1.000
gyrB6925c.1686T>C1.000
gyrB6926c.1687T>C1.000
gyrB6934c.1695A>G1.000
gyrB6949c.1710A>G1.000
gyrB6950c.1711C>T1.000
gyrB6966p.Ser576Thr1.000
gyrB6970p.Asp577Glu1.000
gyrB6973c.1734G>C1.000
gyrB6976c.1737A>G1.000
gyrB6982c.1743A>C1.000
gyrB6991c.1752C>T1.000
gyrB6994c.1755C>G1.000
gyrB7006c.1767T>C1.000
gyrB7009c.1770G>C1.000
gyrB7012c.1773G>C1.000
gyrB7018c.1779G>T1.000
gyrB7024c.1785G>C1.000
gyrB7027c.1788G>A1.000
gyrB7033c.1794G>C1.000
gyrB7066c.1827G>T1.000
gyrB7072c.1833G>A1.000
gyrB7078c.1839A>G1.000
gyrB7081c.1842T>C1.000
gyrB7084c.1845A>G1.000
gyrB7093c.1854T>C1.000
gyrB7100c.1861T>C1.000
gyrB7108c.1869G>A1.000
gyrB7114c.1875C>G1.000
gyrB7120c.1881T>C1.000
gyrB7123c.1884C>A1.000
gyrB7132c.1893T>G1.000
gyrB7136c.1897T>C1.000
gyrB7141c.1902T>C1.000
gyrB7144c.1905A>G1.000
gyrB7150c.1911G>C1.000
gyrB7153c.1914G>C1.000
gyrB7159c.1920C>T1.000
gyrB7162c.1923C>G1.000
gyrB7165c.1926C>G1.000
gyrB7177c.1938G>A1.000
gyrB7189c.1950C>T1.000
gyrB7201c.1962G>A1.000
gyrA7315p.Thr5Met1.000
gyrA7317c.16T>C1.000
gyrA7346c.45C>A1.000
gyrA7355c.54T>C0.840
gyrA7361c.60C>T0.840
gyrA7362p.Glu21Gln0.840
gyrA7394c.93T>C1.000
gyrA7406c.105G>C1.000
gyrA7418c.117C>G1.000
gyrA7421c.120G>C1.000
gyrA7427c.126G>C1.000
gyrA7430c.129G>A1.000
gyrA7433c.132G>C1.000
gyrA7451c.150C>G1.000
gyrA7454c.153G>A1.000
gyrA7457c.156T>C1.000
gyrA7463c.162G>T1.000
gyrA7475c.174A>C1.000
gyrA7480p.Phe60Tyr1.000
gyrA7484c.183T>C1.000
gyrA7490c.189C>G1.000
gyrA7496c.195C>G1.000
gyrA7508c.207C>T1.000
gyrA7523c.222C>G1.000
gyrA7526c.225G>C1.000
gyrA7532c.231T>C1.000
gyrA7538c.237G>A1.000
gyrA7541c.240C>G1.000
gyrA7547c.246C>T1.000
gyrA7565c.264C>T1.000
gyrA7580c.279C>T1.000
gyrA7585p.Ser95Thr1.000
gyrA7587c.286C>T0.929
gyrA7595c.294C>G1.000
gyrA7601c.300C>G1.000
gyrA7607c.306C>G1.000
gyrA7631c.330G>C1.000
gyrA7637c.336C>T1.000
gyrA7649c.348C>T1.000
gyrA7652c.351C>G1.000
gyrA7658c.357A>G1.000
gyrA7661c.360C>T1.000
gyrA7670c.369A>G1.000
gyrA7673c.372G>A1.000
gyrA7676c.375G>C0.966
gyrA7679c.378G>C1.000
gyrA7683c.382A>C1.000
gyrA7694c.393A>G1.000
gyrA7697c.396C>T1.000
gyrA7700c.399G>C1.000
gyrA7710c.409T>C1.000
gyrA7721c.420G>A1.000
gyrA7725c.424C>T1.000
gyrA7728c.427A>C1.000
gyrA7763c.462T>G1.000
gyrA7775c.474C>T1.000
gyrA7784c.483A>G1.000
gyrA7787c.486G>A1.000
gyrA7797c.496C>T1.000
gyrA7821c.520C>T1.000
gyrA7835c.534A>C1.000
gyrA7859c.558A>C1.000
gyrA7865c.564T>C1.000
gyrA7881c.580C>T0.815
gyrA7889c.588G>A0.833
gyrA7892c.591G>C0.826
gyrA7898p.Asp199Glu0.826
gyrA7911p.Ala204Cys1.000
gyrA7919c.618G>A1.000
gyrA7922c.621T>C1.000
gyrA7942p.Glu214Ala1.000
gyrA7946c.645C>G1.000
gyrA8036c.735A>G1.000
gyrA8039c.738T>C1.000
gyrA8042c.741C>T1.000
gyrA8048c.747C>T1.000
gyrA8054c.753T>C1.000
gyrA8057c.756A>G1.000
gyrA8069c.768T>C1.000
gyrA8076p.Val259Ile1.000
gyrA8081c.780A>G1.000
gyrA8084c.783G>A1.000
gyrA8090c.789C>G1.000
gyrA8096c.795T>C1.000
gyrA8099c.798T>G1.000
gyrA8102c.801C>A1.000
gyrA8105c.804G>A1.000
gyrA8111c.810G>C1.000
gyrA8121c.820T>C1.000
gyrA8156c.855T>C1.000
gyrA8168c.867A>G1.000
gyrA8174c.873C>T1.000
gyrA8177c.876A>C1.000
gyrA8186c.885G>A1.000
gyrA8198c.897T>C1.000
gyrA8207c.906T>C1.000
gyrA8213c.912C>T1.000
gyrA8219c.918T>C1.000
gyrA8225c.924T>C1.000
gyrA8231c.930C>G1.000
gyrA8234c.933T>C1.000
gyrA8235c.934T>C1.000
gyrA8240c.939C>G1.000
gyrA8247p.Ile316Val1.000
gyrA8258c.957G>A1.000
gyrA8264c.963T>C1.000
gyrA8267c.966G>C1.000
gyrA8282c.981G>C1.000
gyrA8283p.Ile328Leu1.000
gyrA8288c.987T>C1.000
gyrA8294c.993T>C1.000
gyrA8324c.1023T>C1.000
gyrA8339c.1038A>G1.000
gyrA8340p.Ala347Ser1.000
gyrA8351c.1050C>T1.000
gyrA8354c.1053G>C1.000
gyrA8357c.1056G>A1.000
gyrA8366c.1065G>C1.000
gyrA8372c.1071G>T1.000
gyrA8382p.Leu361Met1.000
gyrA8393c.1092T>C1.000
gyrA8399c.1098T>C1.000
gyrA8402p.Asp367Glu1.000
gyrA8417c.1116C>G1.000
gyrA8419p.Ile373Thr1.000
gyrA8421p.Val374Ile1.000
gyrA8426c.1125G>A1.000
gyrA8447c.1146C>A1.000
gyrA8450c.1149G>A1.000
gyrA8453c.1152A>C1.000
gyrA8456c.1155C>T1.000
gyrA8462c.1161A>G1.000
gyrA8480c.1179C>T1.000
gyrA8486c.1185T>C1.000
gyrA8489c.1188A>G1.000
gyrA8495c.1194C>G1.000
gyrA8501c.1200G>A1.000
gyrA8504c.1203G>C1.000
gyrA8513c.1212C>G1.000
gyrA8516c.1215T>C1.000
gyrA8535p.Glu412Gln1.000
gyrA8540c.1239C>G1.000
gyrA8546c.1245T>C1.000
gyrA8555c.1254G>C1.000
gyrA8561c.1260A>C1.000
gyrA8571c.1270C>T1.000
gyrA8576c.1275C>A1.000
gyrA8578p.Asp426Gly1.000
gyrA8603c.1302A>C1.000
gyrA8619c.1318T>C1.000
gyrA8627c.1326C>G1.000
gyrA8636c.1335A>C1.000
gyrA8646p.Gln449Glu1.000
gyrA8655p.Ile452Val1.000
gyrA8663c.1362C>T1.000
gyrA8672c.1371A>G1.000
gyrA8711c.1410A>C1.000
gyrA8717c.1416C>G1.000
gyrA8720c.1419G>A1.000
gyrA8723c.1422G>C1.000
gyrA8729c.1428T>C1.000
gyrA8731p.Gly477Ala1.000
gyrA8741c.1440C>G1.000
gyrA8756c.1455A>G1.000
gyrA8762c.1461G>C1.000
gyrA8767p.Arg489Lys1.000
gyrA8783c.1482G>T0.941
gyrA8801c.1500G>C1.000
gyrA8810c.1509A>C1.000
gyrA8816c.1515C>G1.000
gyrA8822c.1521C>T1.000
gyrA8828c.1527T>C1.000
gyrA8852c.1551T>C1.000
gyrA8858c.1557T>G1.000
gyrA8870c.1569G>C1.000
gyrA8873c.1572A>C1.000
gyrA8885c.1584C>G1.000
gyrA8897c.1596T>C1.000
gyrA8903c.1602T>C1.000
gyrA8915c.1614A>G1.000
gyrA8942c.1641G>C1.000
gyrA8945c.1644G>T1.000
gyrA8946c.1645T>C1.000
gyrA8954c.1653G>A1.000
gyrA8967p.Ala556Arg1.000
gyrA8981c.1680G>C1.000
gyrA8987c.1686C>A1.000
gyrA8990c.1689C>G1.000
gyrA8993c.1692C>T1.000
gyrA8996c.1695T>C1.000
gyrA8998p.Leu566Trp1.000
gyrA9003c.1702C>T1.000
gyrA9023c.1722A>C1.000
gyrA9029c.1728T>C1.000
gyrA9050p.Asp583Glu1.000
gyrA9051c.1750T>C1.000
gyrA9062c.1761C>G1.000
gyrA9064p.Ser588Leu1.000
gyrA9068c.1767G>C1.000
gyrA9071c.1770G>C1.000
gyrA9077c.1776C>T1.000
gyrA9092c.1791C>G1.000
gyrA9101c.1800A>G1.000
gyrA9104c.1803C>A1.000
gyrA9134c.1833C>G1.000
gyrA9210c.1909C>T1.000
gyrA9230c.1929T>C1.000
gyrA9236c.1935G>C1.000
gyrA9239c.1938C>G1.000
gyrA9242c.1941A>G1.000
gyrA9252p.Val651Ile1.000
gyrA9265p.Asp655Gly1.000
gyrA9267p.Asn656Glu1.000
gyrA9275c.1974G>A1.000
gyrA9278c.1977G>C1.000
gyrA9281c.1980C>T1.000
gyrA9284c.1983T>C1.000
gyrA9287c.1986G>C1.000
gyrA9300p.Ala667Ser1.000
gyrA9304p.Gly668Glu1.000
gyrA9308p.Asp669Glu1.000
gyrA9315c.2014C>T1.000
gyrA9329c.2028C>G1.000
gyrA9335c.2034G>T1.000
gyrA9341c.2040C>G1.000
gyrA9344c.2043C>T1.000
gyrA9345c.2044A>C1.000
gyrA9377c.2076A>G1.000
gyrA9383c.2082T>C1.000
gyrA9386c.2085T>G1.000
gyrA9395c.2094G>C1.000
gyrA9398c.2097T>C1.000
gyrA9419c.2118T>C1.000
gyrA9420p.Ile707Ala1.000
gyrA9425c.2124C>T1.000
gyrA9508p.Ala736Gly1.000
gyrA9518c.2217A>G1.000
gyrA9521c.2220C>T1.000
gyrA9527c.2226A>C1.000
gyrA9542c.2241T>C1.000
gyrA9545c.2244A>G1.000
gyrA9548c.2247T>C1.000
gyrA9557c.2256G>C1.000
gyrA9558p.Val753Ile1.000
gyrA9650c.2349G>C1.000
gyrA9656c.2355C>T1.000
gyrA9665c.2364A>T1.000
gyrA9674c.2373T>C1.000
gyrA9701c.2400T>C1.000
gyrA9716c.2415T>C1.000
gyrA9719c.2418G>C1.000
gyrA9728c.2427C>T1.000
gyrA9734c.2433A>G1.000
gyrA9749c.2448G>C1.000
gyrA9758c.2457C>T1.000
rpoB759522c.-285T>C1.000
rpoB759605c.-202C>A1.000
rpoB759634c.-173A>G1.000
rpoB759636c.-171C>T1.000
rpoB759643c.-164T>C1.000
rpoB759647c.-160T>C1.000
rpoB759651c.-156A>G1.000
rpoB759658c.-149T>C1.000
rpoB759671c.-136G>C1.000
rpoB759675c.-132T>C1.000
rpoB759676c.-131A>G1.000
rpoB759697c.-110A>G1.000
rpoB759698c.-109C>T1.000
rpoB759701c.-106A>T1.000
rpoB759715c.-92G>A1.000
rpoB759725c.-82A>C1.000
rpoB759956c.150C>T1.000
rpoB759986c.180T>C1.000
rpoB759991p.Pro62Gln1.000
rpoB760007c.201C>G1.000
rpoB760010c.204C>T1.000
rpoB760014p.Glu70Gln1.000
rpoB760019c.213G>C1.000
rpoB760025c.219T>C1.000
rpoB760027p.Val74Ala1.000
rpoB760030p.Asn75Thr1.000
rpoB760034c.228A>G1.000
rpoB760037c.231G>A1.000
rpoB760043c.237C>G1.000
rpoB760046c.240G>T1.000
rpoB760067c.261G>C1.000
rpoB760070c.264T>G1.000
rpoB760091c.285G>A1.000
rpoB760101c.295T>C1.000
rpoB760112c.306T>C1.000
rpoB760118c.312T>C1.000
rpoB760121c.315T>C1.000
rpoB760130p.Asp108Glu1.000
rpoB760142c.336C>G1.000
rpoB760148c.342C>T1.000
rpoB760181c.375T>C1.000
rpoB760184c.378A>G1.000
rpoB760196c.390C>G1.000
rpoB760235c.429T>C1.000
rpoB760255p.Asp150Gly1.000
rpoB760283c.477G>C1.000
rpoB760325c.519G>C1.000
rpoB760328c.522G>C1.000
rpoB760337c.531C>G1.000
rpoB760340c.534G>T0.980
rpoB760343c.537G>C1.000
rpoB760361c.555T>C1.000
rpoB760380p.Thr192Leu1.000
rpoB760403c.597C>T1.000
rpoB760406c.600G>C1.000
rpoB760412c.606C>T1.000
rpoB760415c.609C>T1.000
rpoB760418c.612G>T1.000
rpoB760424c.618C>G1.000
rpoB760427c.621G>A1.000
rpoB760430c.624T>C1.000
rpoB760454c.648C>G1.000
rpoB760463c.657C>T1.000
rpoB760475c.669A>G1.000
rpoB760478c.672C>T1.000
rpoB760481c.675G>C1.000
rpoB760484c.678A>G1.000
rpoB760490c.684C>T1.000
rpoB760508c.702G>C1.000
rpoB760514c.708C>T1.000
rpoB760518p.Thr238Ser1.000
rpoB760522p.Ser239Asn1.000
rpoB760532c.726T>C1.000
rpoB760533p.Val243His1.000
rpoB760547c.741G>T1.000
rpoB760567p.Ser254Trp1.000
rpoB760591p.Val262Ala1.000
rpoB760601c.795C>T1.000
rpoB760611c.805T>C1.000
rpoB760646c.840C>G1.000
rpoB760655c.849A>G1.000
rpoB760661c.855A>C1.000
rpoB760670c.864G>C1.000
rpoB760674c.868T>C1.000
rpoB760679c.873A>G1.000
rpoB760683c.877T>C1.000
rpoB760715c.909C>T1.000
rpoB760721c.915C>G1.000
rpoB760727c.921C>G1.000
rpoB760730c.924T>C1.000
rpoB760751c.945G>C1.000
rpoB760755p.His317Asn1.000
rpoB760759p.Val318Ala1.000
rpoB760764p.Glu320Gln1.000
rpoB760775c.969G>C1.000
rpoB760776c.970T>A1.000
rpoB760793c.987A>G1.000
rpoB760805c.999G>C1.000
rpoB760820c.1014T>C1.000
rpoB760841c.1035T>C1.000
rpoB760848p.Thr348Ala1.000
rpoB760858p.Val351Ala1.000
rpoB760868c.1062C>T1.000
rpoB760883c.1077G>C1.000
rpoB760886c.1080A>G1.000
rpoB760919c.1113C>G1.000
rpoB760925c.1119T>C1.000
rpoB760931c.1125C>G1.000
rpoB760934c.1128C>T1.000
rpoB760946c.1140A>G1.000
rpoB761012c.1206C>T1.000
rpoB761015c.1209G>C1.000
rpoB761027c.1221A>G1.000
rpoB761037c.1231T>C1.000
rpoB761051c.1245G>T1.000
rpoB761057c.1251G>C1.000
rpoB761060c.1254C>T1.000
rpoB761084c.1278C>A1.000
rpoB761097c.1291A>T1.000
rpoB761102c.1296A>G1.000
rpoB761126c.1320G>C1.000
rpoB761129c.1323G>C1.000
rpoB761132c.1326G>T1.000
rpoB761133c.1327T>C1.000
rpoB761150c.1344A>C1.000
rpoB761153c.1347G>C1.000
rpoB761168c.1362C>G1.000
rpoB761180c.1374A>C1.000
rpoB761189c.1383T>C1.000
rpoB761195c.1389G>T1.000
rpoB761201c.1395G>A1.000
rpoB761204c.1398C>T1.000
rpoB761207c.1401C>T1.000
rpoB761249c.1443A>G1.000
rpoB761252c.1446C>G1.000
rpoB761255c.1449T>G1.000
rpoB761258c.1452G>A1.000
rpoB761264c.1458C>G1.000
rpoB761282c.1476C>T1.000
rpoB761285c.1479G>A1.000
rpoB761300c.1494G>C1.000
rpoB761327c.1521A>G1.000
rpoB761333c.1527G>C1.000
rpoB761354c.1548C>G1.000
rpoB761357c.1551G>C1.000
rpoB761361c.1555A>T1.000
rpoB761373p.Val523His1.000
rpoB761408c.1602G>C1.000
rpoB761414c.1608A>G1.000
rpoB761423c.1617T>C1.000
rpoB761435c.1629T>C1.000
rpoB761439p.Asp545Gln1.000
rpoB761444c.1638T>C1.000
rpoB761477c.1671C>G1.000
rpoB761492c.1686G>C1.000
rpoB761510c.1704T>A1.000
rpoB761531c.1725C>G1.000
rpoB761537c.1731C>G1.000
rpoB761573c.1767C>G1.000
rpoB761579c.1773G>C1.000
rpoB761588c.1782C>T1.000
rpoB761600c.1794T>C1.000
rpoB761606c.1800C>G1.000
rpoB761612c.1806G>T1.000
rpoB761615c.1809A>C1.000
rpoB761636c.1830G>C1.000
rpoB761645c.1839C>G1.000
rpoB761648c.1842T>C1.000
rpoB761651c.1845C>T1.000
rpoB761657c.1851C>A1.000
rpoB761666c.1860G>C1.000
rpoB761669c.1863C>T1.000
rpoB761675c.1869G>T1.000
rpoB761682c.1876C>T1.000
rpoB761717c.1911C>T0.892
rpoB761725p.Glu640Ala1.000
rpoB761728c.1923 1924insGC1.000
rpoC763351c.-19T>C1.000
rpoC763352c.-18T>A1.000
rpoC763375c.6C>A1.000
rpoC763396c.27A>G1.000
rpoC763402c.33C>G1.000
rpoC763408c.39T>C1.000
rpoC763411c.42T>G1.000
rpoC763430c.61A>C1.000
rpoC763435c.66A>G1.000
rpoC763444c.75T>C1.000
rpoC763456c.87A>G1.000
rpoC763468c.99G>C1.000
rpoC763480c.111C>G1.000
rpoC763483c.114G>C1.000
rpoC763484c.115C>T1.000
rpoC763492c.123G>C1.000
rpoC763528c.159G>A1.000
rpoC763546c.177A>G1.000
rpoC763570c.201G>C1.000
rpoC763573c.204G>T1.000
rpoC763586p.Ile73Val1.000
rpoC763594c.225C>T1.000
rpoC763618c.249C>T1.000
rpoC763621c.252C>G1.000
rpoC763658c.289C>T1.000
rpoC763696c.327T>C1.000
rpoC763699c.330G>C1.000
rpoC763702c.333C>G0.952
rpoC763709c.340C>T1.000
rpoC763717c.348T>C1.000
rpoC763721c.352C>T1.000
rpoC763732c.363C>G1.000
rpoC763741c.372C>T1.000
rpoC763744c.375G>C1.000
rpoC763753c.384C>T1.000
rpoC763756c.387C>T1.000
rpoC763765c.396T>C1.000
rpoC763768c.399C>A1.000
rpoC763790p.Glu141Asn1.000
rpoC763795c.426G>A1.000
rpoC763807c.438T>C1.000
rpoC763813c.444C>G1.000
rpoC763835p.Ala156Met1.000
rpoC763858c.489A>G1.000
rpoC763870c.501C>T1.000
rpoC763872p.Gly168Ala1.000
rpoC763876p.Glu169Asp1.000
rpoC763879c.510A>G1.000
rpoC763882c.513G>A1.000
rpoC763888c.519G>T1.000
rpoC763891c.522G>C0.784
rpoC763894c.525A>G0.789
rpoC763936c.567C>G1.000
rpoC763939c.570G>A1.000
rpoC763945c.576T>C1.000
rpoC763948c.579G>A1.000
rpoC763963c.594C>T1.000
rpoC763967p.Gly200Ser1.000
rpoC763972c.603C>T1.000
rpoC763987c.618C>T1.000
rpoC763991p.Ile208Leu1.000
rpoC763996c.627T>C1.000
rpoC764002c.633C>G1.000
rpoC764005c.636G>C1.000
rpoC764024c.655T>C1.000
rpoC764044c.675T>C1.000
rpoC764059c.690G>C1.000
rpoC764083c.714A>G1.000
rpoC764095c.726C>G1.000
rpoC764101c.732C>G1.000
rpoC764102p.Val245Gln1.000
rpoC764169p.Asn267Thr1.000
rpoC764195p.Ser276Ile1.000
rpoC764206c.837T>C1.000
rpoC764212c.843C>T1.000
rpoC764215c.846A>C1.000
rpoC764218c.849C>T1.000
rpoC764239c.870T>C1.000
rpoC764242c.873C>T1.000
rpoC764254c.885G>C1.000
rpoC764266c.897T>C1.000
rpoC764269c.900G>C1.000
rpoC764272c.903G>C1.000
rpoC764278c.909A>G1.000
rpoC764293c.924G>T1.000
rpoC764314c.945C>T1.000
rpoC764317c.948C>G1.000
rpoC764320c.951C>G1.000
rpoC764329c.960C>T1.000
rpoC764348p.Met327Leu1.000
rpoC764365c.996C>T1.000
rpoC764371c.1002G>C1.000
rpoC764380c.1011G>C1.000
rpoC764381c.1012T>A1.000
rpoC764387c.1018T>C1.000
rpoC764405c.1036A>C1.000
rpoC764428c.1059G>T1.000
rpoC764431c.1062G>C1.000
rpoC764434c.1065A>G1.000
rpoC764446c.1077T>C1.000
rpoC764449c.1080G>C1.000
rpoC764452c.1083T>C1.000
rpoC764455c.1086G>A1.000
rpoC764458c.1089G>C1.000
rpoC764461c.1092A>G1.000
rpoC764497c.1128A>G1.000
rpoC764500c.1131C>G1.000
rpoC764521c.1152T>C1.000
rpoC764527c.1158C>T1.000
rpoC764539c.1170C>G1.000
rpoC764542c.1173C>T1.000
rpoC764548c.1179G>T1.000
rpoC764554c.1185C>T1.000
rpoC764560c.1191T>C1.000
rpoC764575c.1206T>G1.000
rpoC764611c.1242G>C1.000
rpoC764626c.1257C>T1.000
rpoC764635c.1266C>T1.000
rpoC764650c.1281G>T1.000
rpoC764656c.1287C>G1.000
rpoC764668c.1299C>T1.000
rpoC764692c.1323C>T1.000
rpoC764701c.1332C>T1.000
rpoC764719c.1350G>A1.000
rpoC764746c.1377G>A1.000
rpoC764752c.1383G>C1.000
rpoC764758c.1389C>A1.000
rpoC764764c.1395T>C1.000
rpoC764791c.1422C>G1.000
rpoC764809c.1440C>T1.000
rpoC764812c.1443C>G1.000
rpoC764815c.1446A>G1.000
rpoC764824c.1455T>C1.000
rpoC764833c.1464A>G1.000
rpoC764836c.1467G>A1.000
rpoC764842c.1473C>T1.000
rpoC764845c.1476C>A1.000
rpoC764858c.1489T>C1.000
rpoC764863c.1494G>C1.000
rpoC764872c.1503A>G1.000
rpoC764887c.1518G>C1.000
rpoC764888c.1519T>C1.000
rpoC764893c.1524T>C1.000
rpoC764908c.1539G>A1.000
rpoC764911c.1542A>G1.000
rpoC764968c.1599T>C1.000
rpoC765004c.1635G>A1.000
rpoC765007c.1638T>G1.000
rpoC765008c.1639T>C1.000
rpoC765019c.1650A>G1.000
rpoC765022c.1653G>T1.000
rpoC765034c.1665T>C1.000
rpoC765041c.1672T>C1.000
rpoC765047c.1678T>C1.000
rpoC765052c.1683C>G1.000
rpoC765053c.1684T>A1.000
rpoC765076c.1707A>C1.000
rpoC765079c.1710T>G1.000
rpoC765082c.1713G>T1.000
rpoC765085c.1716T>C1.000
rpoC765089c.1720T>C1.000
rpoC765103c.1734G>A1.000
rpoC765122c.1753C>T1.000
rpoC765283c.1914C>G1.000
rpoC765286c.1917G>A1.000
rpoC765292c.1923G>T1.000
rpoC765295c.1926G>C1.000
rpoC765300p.Val644Ala1.000
rpoC765312p.Ala648Asp1.000
rpoC765319c.1950A>G1.000
rpoC765330p.Ser654Asn1.000
rpoC765357p.Met663Thr1.000
rpoC765370c.2001G>C1.000
rpoC765371c.2002C>T1.000
rpoC765376c.2007C>T1.000
rpoC765379c.2010G>T1.000
rpoC765383p.Met672Leu1.000
rpoC765409c.2040T>C1.000
rpoC765412c.2043T>C1.000
rpoC765413p.Pro682Ala1.000
rpoC765421c.2052C>G1.000
rpoC765439c.2070G>A1.000
rpoC765454c.2085C>G1.000
rpoC765478c.2109T>C1.000
rpoC765499c.2130C>G1.000
rpoC765524p.Ala719Ser1.000
rpoC765529c.2160C>T1.000
rpoC765541c.2172C>G1.000
rpoC765550c.2181C>T1.000
rpoC765553c.2184C>T1.000
rpoC765556c.2187G>C1.000
rpoC765562c.2193G>C1.000
rpoC765611p.His748Ser1.000
rpoC765625c.2256C>G1.000
rpoC765631p.Asp754Glu1.000
rpoC765640c.2271A>G1.000
rpoC765658c.2289C>T1.000
rpoC765662c.2293T>C1.000
rpoC765670c.2301C>T1.000
rpoC765688c.2319G>A1.000
rpoC765700c.2331T>C1.000
rpoC765727c.2358T>C1.000
rpoC765734c.2365T>C1.000
rpoC765739c.2370G>C1.000
rpoC765751c.2382C>G1.000
rpoC765753p.Asp795Ala1.000
rpoC765772c.2403C>G1.000
rpoC765784c.2415C>G1.000
rpoC765793c.2424C>G1.000
rpoC765796c.2427C>T1.000
rpoC765826c.2457T>C1.000
rpoC765835c.2466C>T1.000
rpoC765850c.2481G>C1.000
rpoC765868c.2499G>A1.000
rpoC765871c.2502T>C1.000
rpoC765875p.Val836Ile1.000
rpoC765886c.2517C>G1.000
rpoC765908c.2539C>T1.000
rpoC765934c.2565C>T1.000
rpoC765937c.2568T>C1.000
rpoC765961c.2592G>A1.000
rpoC765962c.2593T>C1.000
rpoC765967c.2598C>T1.000
rpoC765994c.2625A>T1.000
rpoC766009c.2640G>C1.000
rpoC766010c.2641T>A1.000
rpoC766061p.Val898Met1.000
rpoC766081c.2713 2714insCAGG0.944
Rv0678778980c.-10A>G1.000
Rv0678779004p.Asp5Glu1.000
Rv0678779007c.18G>T1.000
Rv0678779017c.31 32insCC1.000
rpsL781389c.-171T>C1.000
rpsL781395c.-165T>C1.000
rpsL781399c.-161T>C1.000
rpsL781402c.-158A>G1.000
rpsL781403c.-157G>A1.000
rpsL781410c.-150G>A0.200
rpsL781571c.12C>T1.000
rpsL781608p.Ser17Gly1.000
rpsL781649c.90T>C1.000
rpsL781664c.105C>T1.000
rpsL781682c.123T>C1.000
rpsL781694c.135G>A1.000
rpsL781721c.162C>T1.000
rpsL781728c.169T>C1.000
rpsL781742c.183C>T1.000
rpsL781754c.195G>C1.000
rpsL781760c.201T>C1.000
rpsL781763c.204C>G1.000
rpsL781802c.243G>C1.000
rpsL781805c.246G>T1.000
rpsL781808c.249C>T1.000
rpsL781811c.252C>T1.000
rpsL781829c.270G>T1.000
rpsL781832c.273T>C1.000
rpsL781841c.282C>T1.000
rpsL781868c.309T>C1.000
rpsL781871c.312G>C1.000
rpsL781877c.318T>A1.000
rpsL781892c.333A>G1.000
rpsL781898c.339A>T1.000
rpsL781904c.345C>T1.000
rpsL781907c.348T>C1.000
rpsL781916c.357T>C1.000
rpsL781929p.Gly124Ser1.000
rpsL781933374G>A1.000
rplC800796c.-13A>G1.000
rplC800799c.-10GGAC>G1.000
rplC800807c.-2CA>C1.000
rplC800844c.36T>C1.000
rplC800856c.48A>C1.000
rplC800865c.57A>G1.000
rplC800867p.Ser20Asn1.000
rplC800873p.Arg22Lys1.000
rplC800877c.69A>C1.000
rplC800883c.75G>T1.000
rplC800889c.81C>G1.000
rplC800901c.93C>G1.000
rplC800907c.99C>G1.000
rplC800913c.105G>T1.000
rplC800919c.111C>G1.000
rplC800922c.114C>T1.000
rplC800931c.123G>A1.000
rplC800934c.126C>G1.000
rplC800937c.129A>G1.000
rplC800946c.138T>G1.000
rplC800949c.141T>C1.000
rplC800955c.147C>A1.000
rplC800970c.162T>C1.000
rplC800976c.168G>A1.000
rplC800982c.174C>T1.000
rplC800985c.177A>G1.000
rplC801004p.Leu66Val1.000
rplC801009c.201A>C1.000
rplC801012c.204T>C1.000
rplC801027c.219C>G1.000
rplC801132c.324T>C1.000
rplC801150c.342G>C1.000
rplC801153c.345G>C1.000
rplC801171c.363A>G1.000
rplC801174c.366T>C1.000
rplC801195c.387G>T1.000
rplC801205p.Arg133Ser1.000
rplC801210c.402T>C1.000
rplC801222c.414T>C1.000
rplC801249c.441T>G1.000
rplC801255c.447C>T0.962
rplC801264c.456C>T1.000
rplC801267c.459A>C1.000
rplC801276c.468G>T1.000
rplC801279c.471G>C1.000
rplC801285c.477G>C1.000
rplC801288c.480G>C1.000
rplC801300c.492C>G1.000
rplC801312c.504G>C1.000
rplC801321c.513C>T1.000
rplC801324c.516T>C1.000
rplC801339c.531T>G1.000
rplC801341p.Leu178Gln1.000
rplC801348c.540T>G1.000
rplC801357c.549T>C1.000
rplC801373p.Asn189Gln1.000
rplC801376p.Gly190Ser1.000
rplC801382c.574C>T1.000
rplC801385c.577C>T1.000
rplC801396c.588T>C1.000
rplC801405c.597T>C1.000
rplC801420c.612A>G1.000
rplC801423c.615G>C1.000
rplC801426c.618C>A1.000
rplC801429p.Met207Ile1.000
rplC801438c.630T>C1.000
rplC801461653G>A1.000
embR1416238c.1110G>A1.000
embR1416241c.1107A>G1.000
embR1416253c.1095G>A1.000
embR1416259c.1089C>G1.000
embR1416268c.1080C>G1.000
embR1416273p.Ser359Gly1.000
embR1416280c.1068T>C1.000
embR1416285p.Glu355Gln1.000
embR1416292c.1056C>T1.000
embR1416301c.1047G>T1.000
embR1416310c.1038C>T1.000
embR1416313c.1035T>C1.000
embR1416316c.1032G>T1.000
embR1416330p.Val340Ile1.000
embR1416340c.1008G>T1.000
embR1416343c.1005C>G1.000
embR1416351p.Val333Ile1.000
embR1416379c.969G>C1.000
embR1416388c.960T>C1.000
embR1416460c.888G>C1.000
embR1416468p.Asp294Thr1.000
embR1416474c.874G>A1.000
embR1416481c.867C>G1.000
embR1416484c.864C>G1.000
embR1416500p.Ala283Val0.923
embR1416505c.843G>T1.000
embR1416514c.834A>G1.000
embR1416529c.819G>T1.000
embR1416616c.732A>G1.000
embR1416622c.726G>A1.000
embR1416630p.Gly240Ser1.000
embR1416637p.Asp237Glu1.000
embR1416643c.705C>G1.000
embR1416646c.702T>G1.000
embR1416649c.699T>C1.000
embR1416655c.693C>T1.000
embR1416670c.678G>A1.000
embR1416673c.675C>T0.875
embR1416676c.672C>T0.875
embR1416679c.669A>G0.875
embR1416688c.660C>G1.000
embR1416691c.657G>A1.000
embR1416696p.Ser218Thr1.000
embR1416717c.631G>A0.875
embR1416721c.627T>C1.000
embR1416736c.612C>G0.867
rrs1471969r.124t>c1.000
rrs1472035r.190g>t1.000
rrs1472042r.197t>c1.000
rrs1472053r.208agc>a1.000
rrs1472061r.216a>t1.000
rrs1472075r.230a>g1.000
rrs1472106r.261g>a1.000
rrs1472300r.455c>t1.000
rrs1472338r.493a>t0.154
rrs1472344r.499c>t0.455
rrs1472349r.504a>c0.143
rrs1472374r.529t>g0.175
rrs1472379r.534t>a0.208
rrs1472382r.537g>a0.241
rrs1472389r.544g>a0.345
rrs1472391r.546c>t0.148
rrs1472396r.551a>t0.179
rrs1472400r.555c>t0.208
rrs1472405r.560c>t0.185
rrs1472518r.673g>a0.310
rrs1472530r.685g>a0.477
rrs1472537r.692c>t0.500
rrs1472544r.699c>t0.364
rrs1472545r.700a>g0.186
rrs1472557r.712g>a0.333
rrs1472570r.725g>a0.195
rrs1472571r.726g>c0.463
rrs1472573r.728c>t0.452
rrs1472574r.729t>a0.175
rrs1472579r.734g>a0.357
rrs1472581r.736a>t0.270
rrs1472582r.737g>a0.179
rrs1472592r.747c>t0.186
rrs1472598r.753a>c0.538
rrs1472599r.754g>a0.263
rrs1472606r.761c>t0.174
rrs1472616r.771g>a0.532
rrs1472634r.789t>g0.278
rrs1472635r.790g>t0.235
rrs1473085r.1240a>g1.000
rrs1473123r.1278a>t1.000
rrs1473126r.1281a>c1.000
rrs1473288r.1443c>ct0.897
rrs1473290r.1445c>t1.000
rrl1473396c.-262A>AG0.879
rrl1473401c.-257G>A1.000
rrl1473403c.-255C>T1.000
rrl1473408c.-250C>T1.000
rrl1473417c.-241C>T1.000
rrl1473421c.-237G>A1.000
rrl1473437c.-221T>C1.000
rrl1473449c.-209G>A1.000
rrl1473452c.-206A>G1.000
rrl1473453c.-205G>A1.000
rrl1473541c.-117G>A1.000
rrl1473542c.-116C>T1.000
rrl1473571c.-87C>T1.000
rrl1473600c.-58A>G1.000
rrl1473606c.-52CCGG>C1.000
rrl1473612c.-46A>T1.000
rrl1473613c.-45G>T1.000
rrl1473614c.-44C>T1.000
rrl1473627c.-31T>TG1.000
rrl1473660r.3g>a1.000
rrl1473700r.43g>c1.000
rrl1473752r.95g>t1.000
rrl1473806r.149c>t1.000
rrl1473815r.158t>c1.000
rrl1473832r.175c>cg0.800
rrl1473836r.179a>g1.000
rrl1473876r.219g>a1.000
rrl1473877r.220g>a1.000
rrl1473898r.241c>t1.000
rrl1473923r.266c>a1.000
rrl1473924r.267a>at1.000
rrl1473943r.286g>t1.000
rrl1473944r.287g>t1.000
rrl1473981r.324g>t1.000
rrl1473995r.338g>t1.000
rrl1474001r.344c>t1.000
rrl1474028r.371t>c1.000
rrl1474029r.372g>a1.000
rrl1474034r.377g>a1.000
rrl1474040r.383g>a1.000
rrl1474083r.426c>t1.000
rrl1474111r.454t>c1.000
rrl1474140r.483c>t1.000
rrl1474151r.494c>t1.000
rrl1474181r.524c>a1.000
rrl1474266r.609t>c1.000
rrl1474290r.633ttttcctctccggagg>t1.000
rrl1474306r.649a>c1.000
rrl1474308r.651g>t1.000
rrl1474310r.653t>g1.000
rrl1474362r.705a>g1.000
rrl1474374r.717t>a1.000
rrl1474412r.755gacccacacgcgca>g1.000
rrl1474428r.771c>t1.000
rrl1474429r.772g>c1.000
rrl1474431r.774g>c1.000
rrl1474434r.777t>ttaggg1.000
rrl1474437r.780gaa>g1.000
rrl1474447r.790g>a1.000
rrl1474632r.975g>t1.000
rrl1474639r.982g>a1.000
rrl1474716r.1059a>g1.000
rrl1474760r.1103a>g1.000
rrl1474794r.1137c>a1.000
rrl1474812r.1155g>a1.000
rrl1474831r.1174a>g1.000
rrl1474950r.1293g>a1.000
rrl1474961r.1304t>g1.000
rrl1474962r.1305t>c1.000
rrl1474963r.1306g>a1.000
rrl1474964r.1307t>a1.000
rrl1475005r.1348c>t1.000
rrl1475006r.1349a>g1.000
rrl1475013r.1356g>a1.000
rrl1475028r.1371g>a1.000
rrl1475061r.1404c>t1.000
rrl1475202r.1545g>c1.000
rrl1475213r.1556c>t1.000
rrl1475252r.1595c>t1.000
rrl1475256r.1599c>t1.000
rrl1475266r.1609t>c1.000
rrl1475276r.1619t>c1.000
rrl1475289r.1632g>a1.000
rrl1475291r.1634a>c1.000
rrl1475297r.1640c>t1.000
rrl1475315r.1658a>c1.000
rrl1475333r.1676t>c1.000
rrl1475355r.1698c>t1.000
rrl1475369r.1712g>c1.000
rrl1475378r.1721a>g1.000
rrl1475402r.1745c>t1.000
rrl1475419r.1762c>t1.000
rrl1475429r.1772g>a1.000
rrl1475446r.1789g>c1.000
rrl1475505r.1848g>a1.000
rrl1475526r.1869c>a1.000
rrl1475608r.1951t>c1.000
rrl1475638r.1981c>t1.000
rrl1475657r.2000a>g1.000
rrl1475759r.2102c>t1.000
rrl1475760r.2103c>t1.000
rrl1475763r.2106c>t0.941
rrl1475881r.2224t>c1.000
rrl1475924r.2267a>t1.000
rrl1475988r.2331a>g1.000
rrl1475997r.2340a>t1.000
rrl1476032r.2375c>t1.000
rrl1476033r.2376t>c1.000
rrl1476035r.2378g>a1.000
rrl1476056r.2399g>a1.000
rrl1476086r.2429g>a1.000
rrl1476089r.2432t>c1.000
rrl1476095r.2438c>g1.000
rrl1476108r.2451t>c1.000
rrl1476115r.2458t>c1.000
rrl1476117r.2460g>c0.900
rrl1476214r.2557g>a1.000
rrl1476224r.2567a>g0.895
rrl1476251r.2594t>c0.882
rrl1476281r.2624t>c0.895
rrl1476297r.2640c>t1.000
rrl1476299r.2642c>t0.900
rrl1476332r.2675g>c0.211
rrl1476353r.2696g>t0.190
rrl1476372r.2715t>c0.150
rrl1476382r.2725a>g0.143
rrl1476583r.2926g>a1.000
rrl1476597r.2940g>a1.000
rrl1476628r.2971t>a1.000
rrl1476629r.2972c>a1.000
rrl1476716r.3059a>c1.000
rrl1476726r.3069a>g1.000
rrl1476746r.3089t>a1.000
rrl1476755r.3098g>t1.000
rrl1476759r.3102t>a1.000
rrl1476770r.3113t>c1.000
rrl1476771r.3114g>a1.000
fabG11673523c.84G>T1.000
fabG11673535c.96A>G1.000
fabG11673541c.102G>A1.000
fabG11673547c.108T>C1.000
fabG11673548p.Ala37Thr1.000
fabG11673553c.114C>T1.000
fabG11673556c.117C>T1.000
fabG11673561p.Lys41Arg1.000
fabG11673574c.135C>G1.000
fabG11673580c.141T>C1.000
fabG11673589c.150A>G1.000
fabG11673592c.153G>T1.000
fabG11673595c.156A>C1.000
fabG11673596p.Lys53Glu1.000
fabG11673607c.168T>C1.000
fabG11673616c.177A>G1.000
fabG11673633p.Ser65Asn1.000
fabG11673646c.207T>C0.659
fabG11673649c.210C>T0.659
fabG11673652c.213C>G0.659
fabG11673657p.Thr73Lys0.659
fabG11673660p.Ala74Glu1.000
fabG11673664c.225A>C1.000
fabG11673667c.228A>G1.000
fabG11673679c.240T>C1.000
fabG11673712c.273A>G1.000
fabG11673724c.285A>C1.000
fabG11673727c.288C>T1.000
fabG11673733p.Met98Ile1.000
fabG11673748c.309A>G1.000
fabG11673750p.Lys104Arg1.000
fabG11673757c.318G>A1.000
fabG11673763c.324C>T1.000
fabG11673767p.Asn110Asp1.000
fabG11673787c.348G>A1.000
fabG11673802c.363A>G1.000
fabG11673805c.366G>C1.000
fabG11673811c.372G>T1.000
fabG11673829p.Asn130Lys1.000
fabG11673832c.393A>G1.000
fabG11673838c.399T>C1.000
fabG11673841c.402A>G1.000
fabG11673842p.Met135Leu1.000
fabG11673847c.408A>C1.000
fabG11673853c.414A>C1.000
fabG11673868c.429C>T1.000
fabG11673877c.438C>G1.000
fabG11673880c.441C>T1.000
fabG11673895c.456C>T1.000
fabG11673901c.462A>C1.000
fabG11673913c.474C>A1.000
fabG11673916c.477A>C1.000
fabG11673922c.483T>C1.000
fabG11673925c.486C>G1.000
fabG11673931c.492C>G1.000
fabG11673960p.Ala174Val1.000
fabG11673964c.525C>T1.000
fabG11673973c.534G>C1.000
fabG11673985c.546C>G1.000
fabG11674037p.Gln200Glu1.000
fabG11674051c.612A>G1.000
fabG11674054c.615T>C1.000
fabG11674060c.621A>G1.000
fabG11674063c.624G>C1.000
fabG11674079p.Pro214Ala1.000
fabG11674108c.669C>T1.000
fabG11674114c.675T>C1.000
fabG11674132c.693T>C1.000
fabG11674153c.714G>C1.000
fabG11674159c.720C>T1.000
inhA1674199c.-3C>G1.000
inhA1674205p.Thr2Ala1.000
inhA1674219p.Asp6Glu1.000
inhA1674231c.30T>C1.000
inhA1674237c.36T>C1.000
inhA1674238c.37A>T1.000
inhA1674243c.42A>G1.000
inhA1674258c.57G>C1.000
inhA1674279c.78A>C1.000
inhA1674285c.84A>G1.000
inhA1674294c.93G>A1.000
inhA1674300c.99C>T1.000
inhA1674306c.105G>A1.000
inhA1674313c.112C>T1.000
inhA1674321c.120G>T1.000
inhA1674331p.Leu44Met1.000
inhA1674342c.141T>C1.000
inhA1674352p.Thr51Val1.000
inhA1674361c.160C>T1.000
inhA1674367p.Ala56Gln0.923
inhA1674375c.174C>T1.000
inhA1674382p.Leu61Ile1.000
inhA1674405c.204G>A1.000
inhA1674411c.210C>T1.000
inhA1674421c.220T>C1.000
inhA1674426c.225C>G1.000
inhA1674429c.228C>T1.000
inhA1674435c.234G>C1.000
inhA1674443p.Ala81Val1.000
inhA1674452p.Ala84Glu1.000
inhA1674462p.Lys87Asn1.000
inhA1674471c.270G>C1.000
inhA1674480c.279T>C1.000
inhA1674486c.285T>C1.000
inhA1674489c.288G>C1.000
inhA1674501c.300G>A1.000
inhA1674503p.Thr101Ser1.000
inhA1674507c.306G>A1.000
inhA1674528c.327C>T1.000
inhA1674531c.330C>T1.000
inhA1674542p.Ala114Glu1.000
inhA1674546c.345T>C1.000
inhA1674549c.348G>C1.000
inhA1674570c.369G>C1.000
inhA1674579c.378G>C1.000
inhA1674589p.Met130Leu1.000
inhA1674618c.417C>T1.000
inhA1674624c.423A>C1.000
inhA1674639c.438C>T1.000
inhA1674651c.450C>T1.000
inhA1674654c.453G>C1.000
inhA1674656p.Ser152Thr1.000
inhA1674675c.474C>T1.000
inhA1674690c.489C>T1.000
inhA1674699c.498C>T1.000
inhA1674703c.502T>C1.000
inhA1674718c.517A>C1.000
inhA1674723c.522C>T1.000
inhA1674726c.525G>C1.000
inhA1674738c.537C>T1.000
inhA1674747c.546C>T1.000
inhA1674750c.549T>C1.000
inhA1674753c.552G>T1.000
inhA1674765c.564C>G1.000
inhA1674771c.570C>A1.000
inhA1674777c.576C>A1.000
inhA1674780c.579T>G1.000
inhA1674789c.588G>C1.000
inhA1674795c.594G>A1.000
inhA1674801c.600T>C1.000
inhA1674831c.630G>A1.000
inhA1674873c.672G>A1.000
inhA1674876c.675C>A1.000
inhA1674883p.Ile228Val1.000
inhA1674888c.687C>A1.000
inhA1674903c.702T>C1.000
inhA1674904p.Ala235Pro1.000
inhA1674930c.729C>T1.000
inhA1674934p.Leu245Val1.000
inhA1674942c.741T>C1.000
inhA1674945p.Asp248Glu1.000
inhA1674951c.750G>C1.000
inhA1674966c.765T>C1.000
inhA1674977p.Tyr259Phe1.000
inhA1674984c.783C>T1.000
inhA1674987c.786C>T1.000
inhA1674993c.792G>A1.000
inhA1674999c.798C>T1.000
inhA1675008c.807C>G1.000
rpsA1833589c.48A>T1.000
rpsA1833595c.54T>C1.000
rpsA1833596p.Ser19Ala1.000
rpsA1833623p.Lys28Gln1.000
rpsA1833649c.108C>T0.963
rpsA1833724c.183C>G1.000
rpsA1833727c.186G>A1.000
rpsA1833742c.201A>G1.000
rpsA1833745c.204G>C1.000
rpsA1833748c.207C>G1.000
rpsA1833754c.213G>A1.000
rpsA1833772c.231C>T1.000
rpsA1833782p.Ser81Thr1.000
rpsA1833787c.246C>G1.000
rpsA1833790c.249T>C1.000
rpsA1833802c.261A>G1.000
rpsA1833811c.270G>T1.000
rpsA1833820c.279G>A1.000
rpsA1833856c.315A>G1.000
rpsA1833862c.321G>A1.000
rpsA1833874c.333T>C1.000
rpsA1833928c.387G>C1.000
rpsA1833940c.399C>G1.000
rpsA1833952c.411C>T1.000
rpsA1833973c.432G>T1.000
rpsA1833976c.435C>T1.000
rpsA1833979c.438T>C1.000
rpsA1833988c.447C>T1.000
rpsA1834000c.459G>C1.000
rpsA1834015c.474G>T1.000
rpsA1834018c.477C>T1.000
rpsA1834021c.480C>T1.000
rpsA1834030c.489C>G1.000
rpsA1834051c.510G>A1.000
rpsA1834090c.549G>T1.000
rpsA1834093c.552G>C1.000
rpsA1834094c.553C>T1.000
rpsA1834099c.558C>G1.000
rpsA1834102c.561T>G1.000
rpsA1834105c.564C>G1.000
rpsA1834144c.603G>A1.000
rpsA1834150c.609G>C1.000
rpsA1834153c.612T>C1.000
rpsA1834154p.Asn205Gln1.000
rpsA1834157c.616T>C1.000
rpsA1834162c.621A>G1.000
rpsA1834165c.624A>G1.000
rpsA1834177c.636A>T1.000
rpsA1834186c.645C>G1.000
rpsA1834189c.648G>T1.000
rpsA1834195c.654G>C1.000
rpsA1834234c.693G>T1.000
rpsA1834249c.708T>C1.000
rpsA1834261c.720A>G1.000
rpsA1834264c.723G>C1.000
rpsA1834297c.756C>T1.000
rpsA1834303c.762T>G1.000
rpsA1834306c.765T>C1.000
rpsA1834348c.807T>C1.000
rpsA1834366c.825A>G1.000
rpsA1834369c.828C>G1.000
rpsA1834396c.855G>C1.000
rpsA1834411c.870T>C1.000
rpsA1834417c.876G>C1.000
rpsA1834423c.882G>C1.000
rpsA1834451c.910T>C1.000
rpsA1834456c.915T>G1.000
rpsA1834459c.918G>C1.000
rpsA1834468c.927A>G1.000
rpsA1834489c.948T>C1.000
rpsA1834498c.957C>T1.000
rpsA1834522c.981C>T1.000
rpsA1834528c.987T>C1.000
rpsA1834546c.1005T>C1.000
rpsA1834555c.1014T>C1.000
rpsA1834606c.1065C>T1.000
rpsA1834609c.1068T>C1.000
rpsA1834633c.1092A>G1.000
rpsA1834639c.1098T>C1.000
rpsA1834654p.Glu371Asp1.000
rpsA1834669c.1128G>C1.000
rpsA1834682p.Ala381Ser1.000
rpsA1834690c.1149T>C1.000
rpsA1834699p.Glu386Asp1.000
rpsA1834733p.Ala398Pro1.000
rpsA1834751p.Leu404Met1.000
rpsA1834756c.1215G>A1.000
rpsA1834765p.Glu408Asp1.000
rpsA1834767p.Lys409Thr1.000
rpsA1834774c.1233C>T1.000
rpsA1834789c.1248T>C1.000
rpsA1834792c.1251G>C1.000
rpsA1834829p.Ala430Thr1.000
tlyA1917948c.9A>G1.000
tlyA1917952p.Ala5Thr1.000
katG2154123c.1989G>A1.000
katG2154999c.1113T>C1.000
katG2155014c.1098G>A1.000
katG2155017c.1095C>G1.000
katG2155023c.1089G>C1.000
katG2155029c.1083G>T1.000
katG2155032c.1080A>G1.000
katG2155038c.1074G>A1.000
katG2155041c.1071G>A1.000
kasA2518162c.48G>A1.000
kasA2518204c.90G>A1.000
kasA2518219c.105T>C1.000
kasA2518248p.Ala45Val1.000
kasA2518252c.138C>T1.000
kasA2518255p.Glu47Asp1.000
kasA2518261c.147G>A1.000
kasA2518263p.Phe50Tyr0.857
kasA2518265p.Val51Leu0.857
kasA2518279c.165T>C1.000
kasA2518282c.168A>G1.000
kasA2518283p.Ala57Pro1.000
kasA2518297c.183C>T1.000
kasA2518300c.186T>G1.000
kasA2518318c.204C>G1.000
kasA2518323p.Ser70Asn1.000
kasA2518336c.222A>G1.000
kasA2518339c.225C>G0.952
kasA2518351c.237C>G1.000
kasA2518360c.246C>T1.000
kasA2518369c.255G>C1.000
kasA2518374p.Gly87Ala1.000
kasA2518381p.Leu89Phe1.000
kasA2518385p.Gly91Ser1.000
kasA2518390c.276A>G1.000
kasA2518393c.279G>A1.000
kasA2518396c.282A>C1.000
kasA2518417c.303G>C1.000
kasA2518429c.315A>G1.000
kasA2518438c.324C>T1.000
kasA2518439p.Ala109Thr1.000
kasA2518444c.330T>C1.000
kasA2518447c.333T>G1.000
kasA2518450c.336C>T1.000
kasA2518453c.339C>G1.000
kasA2518462c.348A>G1.000
kasA2518468c.354A>C1.000
kasA2518475c.361A>C1.000
kasA2518480c.366T>C1.000
kasA2518483c.369C>T1.000
kasA2518504c.390T>C1.000
kasA2518506p.Ala131Glu1.000
kasA2518513c.399C>G1.000
kasA2518519c.405G>T1.000
kasA2518535p.Ala141Thr1.000
kasA2518573c.459G>C1.000
kasA2518574p.Ile154Val1.000
kasA2518588c.474T>C1.000
kasA2518591c.477G>C1.000
kasA2518609p.Met165Ile1.000
kasA2518612c.498C>T1.000
kasA2518624c.510C>G1.000
kasA2518636c.522C>T1.000
kasA2518642c.528A>G1.000
kasA2518645c.531G>C1.000
kasA2518657c.543G>A1.000
kasA2518672c.558G>C1.000
kasA2518678c.564C>T1.000
kasA2518681c.567C>T1.000
kasA2518702c.588C>T1.000
kasA2518705c.591T>C1.000
kasA2518714c.600A>C1.000
kasA2518765c.651G>C1.000
kasA2518780c.666G>A1.000
kasA2518783c.669T>C1.000
kasA2518789c.675G>C1.000
kasA2518795c.681C>G1.000
kasA2518807c.693C>T1.000
kasA2518816c.702C>T1.000
kasA2518819c.705C>T1.000
kasA2518822c.708C>T1.000
kasA2518825c.711T>C1.000
kasA2518849c.735G>C1.000
kasA2518850p.Met246Leu1.000
kasA2518864c.750G>C1.000
kasA2518879c.765A>G1.000
kasA2518898c.784T>C1.000
kasA2518906c.792A>G1.000
kasA2518907c.793T>C1.000
kasA2518910p.Leu266Met1.000
kasA2518918c.804C>A1.000
kasA2518930c.816G>C1.000
kasA2518936c.822C>G1.000
kasA2518939c.825T>C1.000
kasA2518942c.828T>C1.000
kasA2518951c.837G>T1.000
kasA2518954c.840C>T1.000
kasA2518957c.843G>C1.000
kasA2518963c.849T>C1.000
kasA2518969c.855T>G1.000
kasA2519047c.933C>T1.000
kasA2519050c.936C>A1.000
kasA2519059c.945G>A1.000
kasA2519062c.948T>G1.000
kasA2519068c.954C>T1.000
kasA2519071c.957C>T1.000
kasA2519072p.Ala320Ser1.000
kasA2519077c.963G>C1.000
kasA2519080c.966G>A1.000
kasA2519167c.1053T>C1.000
kasA2519181p.Val356Ala1.000
kasA2519188c.1074G>C1.000
kasA2519195p.Thr361Ser1.000
kasA2519203c.1089C>T0.923
kasA2519209c.1095C>A0.929
kasA2519218c.1104G>A1.000
kasA2519221c.1107G>C1.000
kasA2519225c.1111C>T1.000
kasA2519257c.1143C>T1.000
kasA2519260c.1146T>A1.000
kasA2519263c.1149C>T1.000
kasA2519266c.1152C>T1.000
kasA2519269c.1155C>G1.000
kasA2519272c.1158C>A1.000
kasA2519284c.1170C>T1.000
kasA2519287c.1173T>C1.000
kasA2519293p.Asp393Glu1.000
kasA2519295p.Tyr394Phe1.000
kasA2519298p.Arg395Gln1.000
kasA2519305c.1191A>C1.000
kasA2519306p.Val398Ile1.000
kasA2519323c.1209G>C1.000
kasA2519338c.1224T>C1.000
kasA2519347c.1233T>C1.000
kasA2519350c.1236C>T1.000
eis2714949c.384C>T1.000
eis2714973c.360A>G1.000
ahpC2726288c.96C>T1.000
ahpC2726299p.Thr36Lys1.000
ahpC2726303c.111T>C1.000
ahpC2726304p.Ile38Val1.000
ahpC2726318p.Glu42Asp1.000
ahpC2726322p.Pro44Ala1.000
ahpC2726339c.147G>C1.000
ahpC2726348c.156T>C1.000
ahpC2726354c.162G>C1.000
ahpC2726357c.165A>G1.000
ahpC2726366c.174G>C1.000
ahpC2726378c.186T>G1.000
ahpC2726387c.195C>T1.000
ahpC2726390c.198G>C1.000
ahpC2726393c.201G>C1.000
ahpC2726397p.Ser69Gly1.000
ahpC2726402c.210G>A1.000
ahpC2726408c.216T>C1.000
ahpC2726420p.Glu76Asp1.000
ahpC2726432c.240C>G1.000
ahpC2726436p.Ile82Val1.000
ahpC2726444c.252G>T1.000
ahpC2726447c.255T>C1.000
ahpC2726453c.261T>C1.000
ahpC2726462c.270A>G1.000
ahpC2726467p.Ala92Val1.000
ahpC2726471c.279T>C1.000
ahpC2726486c.294A>G1.000
ahpC2726493p.Asn101Asp1.000
ahpC2726564c.372C>G1.000
ahpC2726576c.384C>T1.000
ahpC2726582c.390G>C1.000
ahpC2726585c.393C>G1.000
ahpC2726591c.399C>G1.000
ahpC2726600c.408T>C1.000
ahpC2726624c.432C>T1.000
ahpC2726645c.453C>T1.000
ahpC2726648c.456T>A1.000
ahpC2726651c.459G>T1.000
ahpC2726654c.462G>C1.000
ahpC2726657c.465A>C1.000
ahpC2726669c.477T>C1.000
ahpC2726675c.483A>G1.000
ahpC2726678c.486G>C1.000
ahpC2726681c.489A>T1.000
ahpC2726696c.504C>G1.000
ahpC2726714c.522C>T1.000
ahpC2726717c.525A>C1.000
ahpC2726735c.543C>T1.000
ahpC2726747c.555A>G1.000
ahpC2726753c.561T>C1.000
ahpC2726759c.567A>G1.000
ahpC2726762c.570C>G1.000
ahpC2726765c.573C>G1.000
folC2746183c.1416A>C1.000
folC2746189c.1410G>A1.000
folC2746195c.1404G>A1.000
folC2746633c.966G>A0.600
folC2746648c.951C>G0.600
folC2746651c.948A>G0.600
folC2746699c.900G>A0.481
folC2746705c.894C>T1.000
folC2746708c.891G>A1.000
folC2746728c.871A>G1.000
folC2746744c.855A>G1.000
folC2746750c.849G>A1.000
folC2746877p.Val241Ala1.000
folC2746881p.Lys240Glu1.000
folC2746882c.717C>A1.000
folC2746887p.Val238Leu1.000
folC2746903c.696C>A1.000
folC2746909c.690G>C1.000
folC2746915c.684C>A1.000
folC2746918c.681C>G1.000
folC2746987c.612A>G1.000
folC2747020c.579G>C1.000
folC2747023c.576G>C1.000
folC2747032c.567T>C1.000
folC2747053c.546G>A1.000
folC2747059c.540A>C1.000
folC2747065c.534G>T1.000
folC2747070p.Met177Leu1.000
folC2747071c.528G>A1.000
folC2747074c.525C>G1.000
folC2747086c.513T>C1.000
folC2747089c.510C>G1.000
folC2747092c.507G>A1.000
folC2747098c.501G>C1.000
folC2747110c.489A>G1.000
folC2747113c.486G>C1.000
folC2747116c.483C>G1.000
folC2747146c.453C>T1.000
folC2747155c.444C>T1.000
thyX3067205c.741C>G1.000
thyX3067210c.736A>G1.000
thyX3067220c.726C>G1.000
thyX3067223c.723C>G1.000
thyX3067230p.Thr239Ser1.000
thyX3067247c.699G>C1.000
thyX3067250c.696C>G1.000
thyX3067274c.672G>T1.000
thyX3067277c.669G>C1.000
thyX3067283c.663G>C1.000
thyX3067287p.Ala220Val1.000
thyX3067295c.651G>A1.000
thyX3067304c.642T>C1.000
thyX3067316c.630T>C1.000
thyX3067325c.621T>C1.000
thyX3067331c.615G>A1.000
thyX3067337c.609G>A1.000
thyX3067355c.591T>G1.000
thyX3067358c.588G>T1.000
thyX3067369c.577G>T1.000
thyX3067373c.573G>C1.000
thyX3067376c.570C>T1.000
thyX3067382c.564G>A1.000
thyX3067385c.561G>A1.000
thyX3067389p.Thr186Ser1.000
thyX3067391c.555C>G1.000
thyX3067400c.546G>C1.000
thyX3067412c.534G>C1.000
thyX3067421c.525C>G1.000
thyX3067427c.519C>G1.000
thyX3067430c.516G>A1.000
thyX3067433c.513G>A1.000
thyX3067439c.507T>C1.000
thyX3067445c.501G>A1.000
thyX3067451c.495C>T1.000
thyX3067457c.489G>C1.000
thyX3067465p.Ile161Val1.000
thyX3067466c.480C>G1.000
thyX3067475c.471T>C1.000
thyX3067481c.465G>A1.000
thyX3067488p.Lys153Arg1.000
thyX3067504p.Ala148Thr1.000
thyX3067511c.435C>T1.000
thyX3067515p.Ser144Ile1.000
thyX3067526c.420G>A1.000
thyX3067531p.Ala139Ser1.000
thyX3067619c.327T>C1.000
thyX3067634c.312G>T1.000
thyX3067715c.231G>A1.000
thyX3067721c.225A>G1.000
thyX3067727c.219T>G1.000
thyX3067735p.Ser71Ala1.000
thyX3067736c.210G>A1.000
thyX3067739c.207A>G1.000
thyX3067742c.204T>C1.000
thyX3067760c.186C>G1.000
thyX3067763c.183G>C1.000
thyX3067769c.177G>A0.933
thyX3067781c.165G>C1.000
thyX3067793c.153A>G1.000
thyX3067814c.132A>G1.000
thyX3067823c.123C>G1.000
thyX3067849p.Pro33Glu1.000
thyX3067850c.96T>G1.000
thyX3067853c.93G>T1.000
thyX3067886c.60T>G1.000
thyX3067889c.57G>C1.000
thyX3067898p.Asp16Glu1.000
thyX3067916c.30T>C1.000
thyX3067919c.27C>T1.000
thyX3067925c.21C>T1.000
thyX3067934c.12G>A1.000
thyA3073839c.633A>G1.000
thyA3073845c.627G>A1.000
thyA3073857c.615G>A1.000
thyA3073863c.609A>G1.000
thyA3073892c.580C>A1.000
thyA3073893c.579G>A1.000
thyA3073902c.570G>A1.000
thyA3073926c.546C>G1.000
thyA3073929c.543A>G1.000
thyA3073947c.525C>A1.000
thyA3073953c.519A>C1.000
thyA3073971c.501G>A1.000
thyA3073977c.495T>C1.000
thyA3073980c.492G>A1.000
thyA3073983c.489G>C1.000
thyA3073989c.483A>G1.000
thyA3073998c.474C>G1.000
thyA3074004c.468A>G1.000
thyA3074025c.447G>A1.000
thyA3074028c.444C>G1.000
thyA3074031c.441A>G1.000
thyA3074037c.435G>C1.000
thyA3074053p.Arg140Gln1.000
thyA3074057p.Glu139Pro1.000
thyA3074063p.Glu137Gln1.000
thyA3074070c.402G>A1.000
thyA3074097c.375G>C1.000
thyA3074106c.366A>G1.000
thyA3074112c.360G>A1.000
thyA3074120c.352A>G1.000
thyA3074121p.Asp117Glu1.000
thyA3074126c.346G>A1.000
thyA3074127c.345C>T1.000
thyA3074130c.342C>G1.000
thyA3074133c.339G>A1.000
thyA3074157c.315G>C1.000
thyA3074160c.312T>C1.000
thyA3074165p.Ala103Thr0.958
thyA3074172c.300C>G1.000
thyA3074181c.291T>C1.000
thyA3074184c.288T>A1.000
thyA3074187c.285A>T1.000
thyA3074196c.276C>T1.000
thyA3074199c.273C>G1.000
thyA3074205p.Glu89Asp1.000
thyA3074214p.Asp86Glu1.000
thyA3074217c.255A>G1.000
thyA3074220c.252T>G1.000
thyA3074241c.231G>C1.000
thyA3074244c.228T>A1.000
thyA3074397c.75T>C1.000
thyA3074423p.Pro17Ala1.000
thyA3074424c.48C>G1.000
thyA3074427c.45A>G1.000
thyA3074444p.Phe10Arg1.000
thyA3074450c.22G>A1.000
thyA3074454c.18G>A1.000
thyA3074463c.9T>A1.000
thyA3074470p.Val1Ala1.000
ald3086825c.6C>A1.000
ald3086837c.18G>A1.000
ald3086843c.24G>A1.000
ald3086850p.Asn11Asp1.000
ald3086867c.48G>T1.000
ald3086870c.51C>G1.000
ald3087347c.528C>G1.000
ald3087368c.549A>C1.000
ald3087375p.Ile186Val1.000
ald3087641c.822T>C1.000
ald3087684p.Ala289Thr1.000
ald3087689c.870G>C1.000
ald3087699p.Leu294Val1.000
ald3087704c.885T>C1.000
ald3087713c.894G>C1.000
ald3087727p.Ala303Gly1.000
ald3087729p.Ser304Ala1.000
ald3087733p.Val305Ala1.000
ald3087737c.918G>C1.000
ald3087738p.Lys307Arg1.000
ald3087770c.951G>C1.000
ald3087776c.957G>C1.000
ald3087779c.960T>C1.000
ald3087786p.Glu323Lys1.000
ald3087791c.972T>C1.000
fbiA3640199c.-344A>G1.000
fbiA3640220c.-323A>G1.000
fbiA3640225c.-318G>A1.000
fbiA3640232c.-311T>C1.000
fbiA3640240c.-303A>G1.000
fbiA3640260c.-283T>C1.000
fbiA3640261c.-282C>T1.000
fbiA3640262c.-281G>A1.000
fbiA3640270c.-273G>A1.000
fbiA3640272c.-271GA>G1.000
fbiA3640282c.-261C>T1.000
fbiA3640298c.-245A>G1.000
fbiA3640302c.-241T>C1.000
fbiA3640303c.-240T>C1.000
fbiA3640318c.-225A>T1.000
fbiA3640365c.-178C>G1.000
fbiA3640541c.-2A>T0.929
fbiA3640549p.Val3Leu1.000
fbiA3640560c.18G>C1.000
fbiA3640562p.Ala7Val1.000
fbiA3640566c.24T>C1.000
fbiA3640572c.30C>G1.000
fbiA3640590c.48G>A1.000
fbiA3640598p.Val19Ala1.000
fbiA3640604p.Gln21Arg1.000
fbiA3640681p.Val47Ile1.000
fbiA3640689c.147C>T1.000
fbiA3640713c.171T>C1.000
fbiA3640714p.Val58Ile1.000
fbiA3640722c.180G>A1.000
fbiA3640725c.183T>C1.000
fbiA3640743c.201T>C1.000
fbiA3640749c.207G>C1.000
fbiA3640758c.216G>C1.000
fbiA3640785p.Gln81His1.000
fbiA3640788c.246T>A1.000
fbiA3640797c.255T>C1.000
fbiA3640803c.261C>T1.000
fbiA3640808p.Met89Lys1.000
fbiA3640810p.Gln90Glu1.000
fbiA3640818c.276G>C1.000
fbiA3640820p.Val93Ala1.000
fbiA3640824c.282C>T1.000
fbiA3640827c.285T>C1.000
fbiA3640833c.291G>C1.000
fbiA3640849p.Glu103Gln1.000
fbiA3640854c.312C>G1.000
fbiA3640857c.315G>T1.000
fbiA3640860c.318C>T1.000
fbiA3640863c.321C>A1.000
fbiA3640866c.324T>C1.000
fbiA3640872c.330C>A1.000
fbiA3640879c.337C>T1.000
fbiA3640901p.Gln120Arg1.000
fbiA3640914c.372C>G1.000
fbiA3640918p.Ser126Ala1.000
fbiA3640930p.Glu130Thr1.000
fbiA3640935c.393C>A1.000
fbiA3640938c.396A>G1.000
alr3840230c.1191A>G1.000
alr3840233c.1188T>C1.000
alr3840236c.1185T>G1.000
alr3840248c.1173G>C1.000
alr3840254c.1167T>C1.000
alr3840275c.1146A>C1.000
alr3840293c.1128A>C1.000
alr3840296c.1125C>G1.000
alr3840302c.1119C>T1.000
alr3840308c.1113C>G1.000
alr3840312p.Ile370Thr1.000
alr3840314c.1107G>A1.000
alr3840328c.1093A>G1.000
alr3840356c.1065A>G1.000
alr3840362c.1059C>T1.000
alr3840374c.1047G>A1.000
alr3840382p.Met347Leu1.000
alr3840400p.Ile341Val1.000
alr3840404c.1017C>G1.000
alr3840407c.1014C>G1.000
alr3840410c.1011A>G1.000
alr3840413c.1008G>C1.000
alr3840418p.Cys335Arg1.000
alr3840419c.1002T>G1.000
alr3840423p.Arg333Lys1.000
alr3840436c.985G>A1.000
alr3840437c.984C>G1.000
alr3840446c.975C>G1.000
alr3840467c.954C>A1.000
alr3840470c.951G>C1.000
alr3840476c.945T>G1.000
alr3840482c.939A>G1.000
alr3840493c.928G>A1.000
alr3840502p.Leu307Val1.000
alr3840506c.915G>C1.000
alr3840513p.Arg303His0.964
alr3840515c.906T>G1.000
alr3840521c.900G>A1.000
alr3840527c.894T>G1.000
alr3840536c.885A>G1.000
alr3840548c.873C>T1.000
alr3840551c.870C>G1.000
alr3840559p.Arg288Ser1.000
alr3840562p.Ile287Val1.000
alr3840578c.843A>G1.000
alr3840581c.840A>T1.000
alr3840584c.837A>G1.000
alr3840605c.816C>A1.000
alr3840611c.810C>T1.000
alr3840620c.801A>G1.000
alr3840623c.798G>C1.000
alr3840641c.780T>C1.000
alr3840647c.774A>G1.000
alr3840662c.759C>G1.000
panD4044230c.53 54insAG0.861
panD4044237c.45C>G1.000
panD4044240c.42C>G1.000
panD4044252c.30G>A1.000
panD4044266c.16G>A1.000
panD4044270c.12C>T1.000
embC4240420c.558T>C1.000
embC4240423c.561G>A1.000
embC4240444c.582C>G1.000
embC4240450c.588G>A1.000
embC4240471c.609C>T1.000
embC4240475p.Ala205Thr1.000
embC4240484p.Ala208Thr1.000
embC4240489c.627A>G1.000
embC4240495c.633T>C1.000
embC4240507c.645G>C1.000
embC4240512p.Ser217Thr1.000
embC4240514p.Val218Ile1.000
embC4240519c.657T>C1.000
embC4240543c.681G>C1.000
embC4240547c.685C>T1.000
embC4240561c.699C>G1.000
embC4240703c.841C>T1.000
embC4240717c.855T>C1.000
embC4240726c.864G>C1.000
embC4240780c.918T>C1.000
embC4240783c.921G>C1.000
embC4240789c.927T>C1.000
embC4240795c.933C>G1.000
embC4240815p.Gly318Ala1.000
embC4240819c.957A>G1.000
embC4240828c.966G>A1.000
embC4240831c.969T>G1.000
embC4240853c.991C>T1.000
embC4240859p.Leu333Met1.000
embC4240867c.1005T>C1.000
embC4240879c.1017G>C1.000
embC4240885c.1023T>C1.000
embC4240886p.Ile342Val1.000
embC4240900c.1038A>G1.000
embC4240918c.1056G>A1.000
embC4240919c.1057C>T1.000
embC4240936c.1074A>G1.000
embC4240945c.1083T>G1.000
embC4240954c.1092T>C1.000
embC4240957c.1095C>G0.941
embC4240981c.1119G>C1.000
embC4240983p.Ser374Asn1.000
embC4240990c.1128A>C1.000
embC4240996c.1134G>C1.000
embC4241005c.1143G>C1.000
embC4241017c.1155T>C1.000
embC4241023c.1161T>G1.000
embC4241039p.Asp393Asn1.000
embC4241047c.1185C>G1.000
embC4241050c.1188T>G1.000
embC4241053c.1191G>C1.000
embC4241056c.1194C>A1.000
embC4241095c.1233C>T1.000
embC4241101c.1239G>C1.000
embC4241107c.1245G>A1.000
embC4241146c.1284C>G1.000
embC4241162c.1300T>C1.000
embC4241182c.1320G>T1.000
embC4241185c.1323G>C1.000
embC4241197c.1335G>C1.000
embC4241200c.1338C>T1.000
embC4241203c.1341T>C1.000
embC4241230c.1368A>G1.000
embC4241233c.1371G>C1.000
embC4241313p.Ala484Val1.000
embC4241319p.Pro486Leu1.000
embC4241326c.1464T>C1.000
embC4241332c.1470T>C1.000
embC4241392c.1530G>C1.000
embC4241401c.1539C>T1.000
embC4241407c.1545A>G1.000
embC4241412p.Ile517Thr1.000
embC4241425c.1563G>A1.000
embC4241453p.Ile531Val1.000
embC4241461c.1599C>T1.000
embC4241576p.Thr572Ala1.000
embC4241584c.1722T>C1.000
embC4241587c.1725C>G1.000
embC4241591c.1729C>T1.000
embC4241614c.1752A>C1.000
embC4241617c.1755G>A1.000
embC4241626c.1764T>C1.000
embC4241644c.1782G>C1.000
embC4241648c.1786T>C1.000
embC4241656c.1794G>C1.000
embC4241665c.1803G>A1.000
embC4241671c.1809T>G1.000
embC4241677c.1815G>C1.000
embC4241683c.1821G>C1.000
embC4241689c.1827G>C1.000
embC4241692c.1830C>G1.000
embC4241694p.Ala611Val1.000
embC4241710c.1848G>A1.000
embC4241713c.1851G>C1.000
embC4241719c.1857G>C1.000
embC4241741p.Val627Leu1.000
embC4241746c.1884C>T1.000
embC4241750p.Leu630Met1.000
embC4241755c.1893C>G1.000
embC4241770c.1908T>C1.000
embC4241788c.1926C>T1.000
embC4241791c.1929G>C1.000
embC4241803c.1941T>C1.000
embC4241806c.1944G>T1.000
embC4241809c.1947A>G1.000
embC4241857c.1995C>G1.000
embC4242070c.2208T>G1.000
embC4242079c.2217T>C1.000
embC4242085c.2223A>G1.000
embC4242091c.2229T>G1.000
embC4242092c.2230T>C1.000
embC4242095p.Ala745Thr1.000
embC4242105p.Thr748Ser1.000
embC4242109c.2247C>T1.000
embC4242146p.Asn762Asp1.000
embC4242151c.2289A>G1.000
embC4242154c.2292C>A1.000
embC4242161p.Ala767Pro1.000
embC4242171p.Thr770Ser1.000
embC4242175c.2313G>T1.000
embC4242179p.Leu773Val1.000
embC4242187c.2325C>T1.000
embC4242190c.2328C>G1.000
embC4242196c.2334A>C1.000
embC4242245p.Thr795Ser1.000
embC4242250c.2388C>G1.000
embC4242301c.2439G>T1.000
embC4242305p.Ile815Val1.000
embC4242315p.Ser818Thr1.000
embC4242319c.2457A>G1.000
embC4242320p.Pro820Ala1.000
embC4242331c.2469A>G1.000
embC4242334c.2472G>C1.000
embC4242343c.2481G>T1.000
embC4242355c.2493A>C1.000
embC4242361c.2499C>T1.000
embC4242367c.2505C>G1.000
embC4242373c.2511C>G1.000
embC4242384p.Tyr841Phe1.000
embC4242721c.2859G>T1.000
embC4242742c.2880C>G1.000
embC4242745c.2883A>C1.000
embC4242748c.2886A>G1.000
embC4242826c.2964G>C1.000
embC4242832c.2970A>C1.000
embC4242838c.2976C>G1.000
embC4242844c.2982A>G1.000
embC4242847c.2985C>G1.000
embC4242850c.2988G>A1.000
embC4242859c.2997C>T1.000
embC4242862c.3000A>G1.000
embC4242863p.Tyr1001Asn1.000
embC4242868c.3006C>T1.000
embC4242874c.3012C>T1.000
embC4242877c.3015G>A1.000
embC4242878p.Thr1006Ser1.000
embC4242883c.3021C>G1.000
embC4242886c.3024G>A1.000
embA4243192c.-41A>G1.000
embA4243203c.-30C>G1.000
embA4243206c.-27T>A1.000
embA4243208c.-25A>G1.000
embA4243222c.-11C>G1.000
embA4243228c.-5G>C1.000
embA4243230c.-3C>A1.000
embA4243236p.Pro2Ser1.000
embA4243240p.His3Leu1.000
embA4243262p.His10Gln1.000
embA4243271c.39A>C1.000
embA4243274c.42C>G1.000
embA4243275c.43C>T1.000
embA4243291p.Ser20Leu1.000
embA4243296p.Ile22Val1.000
embA4243301c.69G>C1.000
embA4243304c.72T>G1.000
embA4243308p.Leu26Val1.000
embA4243318p.Gly29Ala1.000
embA4243320p.Ile30Leu1.000
embA4243331c.99G>C1.000
embA4244207c.975C>G0.833
embA4244208c.976C>T0.833
embA4244228c.996A>C1.000
embA4244244p.Ile338Leu1.000
embA4244247p.Val339Ile1.000
embA4244267c.1035G>C1.000
embA4244324c.1092T>C1.000
embA4244327c.1095T>C1.000
embA4244333c.1101G>C1.000
embA4244337p.Leu369Val1.000
embA4244340p.Ser370Ala1.000
embA4244354c.1122G>A1.000
embA4244372c.1140T>C1.000
embA4244390c.1158G>C1.000
embA4244393c.1161G>T1.000
embA4244408c.1176G>C1.000
embA4244413p.Val394Ala1.000
embA4244415c.1183T>C1.000
embA4244426c.1194G>C1.000
embA4244427p.Ser399Ala1.000
embA4244438c.1206C>G1.000
embA4244439p.Gly403Ser1.000
embA4244450c.1218C>T1.000
embA4244451p.Pro407Ser1.000
embA4244460p.Val410Ile1.000
embA4244465c.1233C>G1.000
embA4244474c.1242G>C1.000
embA4244479p.Thr416Met1.000
embA4244483c.1251T>C1.000
embA4244504c.1272G>A1.000
embA4244507c.1275G>T1.000
embA4244517p.Leu429Val1.000
embA4244523p.Pro431Ala1.000
embA4244534c.1302T>C1.000
embA4244537c.1305T>G1.000
embA4244545p.Ala438Val1.000
embA4244636c.1404G>C1.000
embA4244645c.1413T>C1.000
embA4244648c.1416G>C1.000
embA4244649p.Asp473Asn1.000
embA4244666c.1434G>C1.000
embA4244675c.1443A>G1.000
embA4244676p.Ser482Ala1.000
embA4244681c.1449A>G1.000
embA4244684c.1452C>G1.000
embA4244714c.1482C>G1.000
embA4244747c.1515T>G1.000
embA4244753c.1521G>C1.000
embA4244756c.1524G>A1.000
embA4244758p.Ser509Thr1.000
embA4244763p.Val511Ile1.000
embA4244768p.Glu512Asp1.000
embA4244778p.Ser516Thr1.000
embA4244781c.1549C>A1.000
embA4244786c.1554G>C1.000
embA4244792c.1560G>C1.000
embA4244802c.1570T>C1.000
embA4244808p.Phe526Leu1.000
embA4244868p.Ser546Arg1.000
embA4244897c.1665T>C1.000
embA4244900c.1668G>C1.000
embA4244906c.1674C>T1.000
embA4244909c.1677C>T1.000
embA4244921c.1689C>G1.000
embA4244924c.1692G>C1.000
embA4244933c.1701A>G1.000
embA4244960c.1728A>C1.000
embA4245047c.1815G>C1.000
embA4245059c.1827G>C1.000
embA4245060c.1828T>C1.000
embA4245063c.1831C>T1.000
embA4245083c.1851A>T1.000
embA4245119c.1887C>T1.000
embA4245131c.1899G>C1.000
embA4245137c.1905T>C1.000
embA4245143c.1911C>T1.000
embA4245149c.1917C>G1.000
embA4245152c.1920C>G1.000
embA4245164c.1932C>T0.938
embA4245173c.1941G>C0.939
embA4245182c.1950T>C1.000
embA4245188c.1956G>C1.000
embA4245200c.1968C>G1.000
embA4245206c.1974A>G1.000
embA4245207c.1975T>C1.000
embA4245215c.1983A>C1.000
embA4245223p.Tyr664Cys1.000
embA4245263c.2031A>G1.000
embA4245282p.Ile684Val1.000
embA4245285c.2053T>C1.000
embA4245293c.2061T>C1.000
embA4245296c.2064G>C1.000
embA4245299c.2067A>G1.000
embA4245302c.2070G>A1.000
embA4245317c.2085G>C1.000
embA4245327p.Ala699Leu1.000
embA4245362c.2130G>T1.000
embA4245368c.2136T>C1.000
embA4245377c.2145T>C1.000
embA4245388p.Ala719Gly1.000
embA4245402p.Thr724Ala1.000
embA4245407c.2175G>C1.000
embA4245431c.2199T>C1.000
embA4245434c.2202G>T1.000
embA4245443c.2211C>T1.000
embA4245464c.2232C>T1.000
embA4245476c.2244C>G1.000
embA4245488c.2256G>A1.000
embA4245489p.Val753Leu1.000
embA4245497c.2265C>G1.000
embA4245501p.Ala757Thr1.000
embA4245514p.Asp761Gly1.000
embA4245530c.2298T>C1.000
embA4245535p.Ser768Asn1.000
embA4245539c.2307C>G1.000
embA4245540p.Val770Phe1.000
embA4245545c.2313C>G1.000
embA4245551c.2319A>G1.000
embA4245554c.2322C>G1.000
embA4245557c.2325G>A1.000
embA4245560c.2328C>G1.000
embA4245563c.2331G>C1.000
embA4245569c.2337G>A1.000
embA4245594c.2362T>A1.000
embA4245599c.2367A>G1.000
embA4245605c.2373G>C1.000
embA4245620c.2388T>C1.000
embA4245623c.2391G>A1.000
embA4245635c.2403A>G1.000
embA4245641c.2409C>T1.000
embA4245652p.Thr807Ser1.000
embA4245662c.2430G>C1.000
embA4245674c.2442A>C1.000
embA4245677c.2445G>C1.000
embA4245682p.Gly817Ala1.000
embA4245688p.Val819Ala1.000
embA4245692c.2460G>C1.000
embA4245701c.2469G>A1.000
embA4245704c.2472G>C1.000
embA4245726c.2494T>C1.000
embA4245737c.2505A>C1.000
embA4245758c.2526C>T1.000
embA4245771p.Asn847Ser1.000
embA4245786p.Ala852Thr1.000
embA4245795p.Ala855Ser0.917
embA4245875c.2643G>A1.000
embA4245887c.2655T>C0.440
embA4245890c.2658C>T0.440
embA4245899c.2667C>G1.000
embA4245915p.Gln895Glu1.000
embA4245929c.2697C>T0.750
embA4245930p.Gly900Arg0.750
embA4245935c.2703G>C0.750
embA4245942p.Arg904Thr0.750
embA4245947p.Ile905Met1.000
embA4245953c.2721A>G1.000
embA4245968c.2736T>C1.000
embA4245983c.2751A>G1.000
embA4245986c.2754G>A1.000
embA4245992c.2760C>G1.000
embA4245994p.Ala921Gly1.000
embA4246004c.2772T>C1.000
embA4246010c.2778G>C1.000
embA4246013c.2781T>C1.000
embA4246028c.2796G>C1.000
embA4246041p.Asp937Asn1.000
embA4246055c.2823T>C1.000
embA4246064c.2832T>C1.000
embA4246070c.2838G>A1.000
embA4246079c.2847C>T1.000
embA4246082c.2850T>C1.000
embA4246085c.2853G>A1.000
embA4246088c.2856A>G1.000
embA4246115c.2883T>G1.000
embA4246121c.2889G>T1.000
embA4246122c.2890C>T1.000
embA4246128p.Ser966Thr1.000
embA4246138p.Arg969Gln1.000
embA4246148c.2916G>A1.000
embA4246151c.2919A>G1.000
embA4246152p.Ala974Lys1.000
embA4246157c.2925A>C1.000
embA4246175c.2943C>T1.000
embA4246196c.2964C>G1.000
embA4246205c.2973A>G1.000
embA4246211c.2979T>C1.000
embA4246220c.2988T>C1.000
embA4246229c.2997T>C1.000
embA4246235c.3003G>A1.000
embA4246238c.3006T>G1.000
embA4246250c.3018G>C1.000
embA4246259c.3027G>T1.000
embA4246274c.3042G>C1.000
embA4246292c.3060A>G1.000
embA4246299p.Ser1023Ala1.000
embA4246302p.Ser1024Gly1.000
embA4246305p.Ser1025Pro1.000
embA4246313c.3081C>T1.000
embA4246316c.3084T>G1.000
embA4246346c.3114C>A1.000
embB4246682p.Asp57Asn1.000
embB4246690c.177A>G1.000
embB4246693c.180G>A1.000
embB4246694p.Arg61Asn1.000
embB4246702c.189A>G1.000
embB4246706p.Gly65Asn1.000
embB4246720c.207C>G1.000
embB4246729c.216C>T1.000
embB4246828c.315A>G1.000
embB4246843c.330T>C1.000
embB4246844c.331T>C1.000
embB4246853c.340T>C1.000
embB4246869p.Ser119Asn1.000
embB4246871p.Ala120Ser1.000
embB4246874p.Gln121Lys1.000
embB4246882c.369G>C1.000
embB4246883p.Asp124Asn1.000
embB4246910c.397T>C1.000
embB4246915c.402C>G1.000
embB4246921c.408G>A1.000
embB4246934p.Thr141Ala1.000
embB4246975c.462C>T1.000
embB4246981c.468C>T1.000
embB4246992p.Asn160Thr1.000
embB4246996c.483C>T1.000
embB4247002c.489G>C1.000
embB4247011c.498C>T1.000
embB4247014c.501G>C1.000
embB4247017c.504G>C1.000
embB4247023c.510G>C1.000
embB4247029c.516G>A1.000
embB4247035c.522C>T1.000
embB4247040p.Phe176Tyr1.000
embB4247044c.531C>G1.000
embB4247047c.534C>T1.000
embB4247062c.549G>T1.000
embB4247068c.555T>C1.000
embB4247077c.564G>C1.000
embB4247086c.573C>T0.962
embB4247095c.582G>A1.000
embB4247105p.Pro198Asp1.000
embB4247114p.Ala201Arg1.000
embB4247117p.Val202Leu1.000
embB4247125c.612G>C1.000
embB4247150p.Arg213Thr1.000
embB4247155c.642G>C1.000
embB4247167c.654A>G1.000
embB4247168c.655C>T1.000
embB4247185c.672G>T1.000
embB4247192p.Val227Leu1.000
embB4247201p.Val230Thr1.000
embB4247209c.696A>G1.000
embB4247219c.706T>C1.000
embB4247348p.Thr279Val1.000
embB4247356c.843C>G1.000
embB4247358p.Val282Ala1.000
embB4247360p.Val283Met1.000
embB4247371c.858C>A1.000
embB4247380c.867C>G1.000
embB4247395c.882C>G1.000
embB4247401c.888T>C1.000
embB4247407c.894G>C1.000
embB4247425c.912G>C1.000
embB4247437c.924A>G1.000
embB4247446c.933C>T1.000
embB4247491c.978G>C1.000
embB4247497c.984T>C1.000
embB4247500c.987C>G1.000
embB4247512c.999T>C1.000
embB4247521c.1008G>C1.000
embB4247524c.1011G>T1.000
embB4247539c.1026T>C1.000
embB4247554c.1041T>C1.000
embB4247555p.Leu348Ile1.000
embB4247566c.1053C>G1.000
embB4247567c.1054C>T1.000
embB4247572c.1059A>C1.000
embB4247579p.Ala356Phe1.000
embB4247590c.1077A>G1.000
embB4247603c.1090C>T1.000
embB4247629c.1116C>G1.000
embB4247630c.1117C>T1.000
embB4247644c.1131G>C1.000
embB4247646p.Glu378Ala1.000
embB4247671c.1158G>C1.000
embB4247677c.1164C>G1.000
embB4247683c.1170C>G1.000
embB4247684c.1171T>C1.000
embB4247704c.1191G>A1.000
embB4247716c.1203C>A1.000
embB4247722c.1209G>T1.000
embB4247725c.1212G>C1.000
embB4247728c.1215G>A1.000
embB4247743c.1230C>G1.000
embB4247761c.1248T>C1.000
embB4247765c.1252C>T1.000
embB4247830c.1317A>G1.000
embB4247836c.1323A>C1.000
embB4247839c.1326G>C1.000
embB4247848c.1335G>A1.000
embB4247851c.1338C>G1.000
embB4247857c.1344C>G1.000
embB4247887c.1374C>T1.000
embB4247896c.1383G>C1.000
embB4247899p.Met462Ile1.000
embB4247909c.1396T>C1.000
embB4247913c.1401 1402insCAA1.000
embB4247914c.1401G>A1.000
embB4247923p.His470Gln1.000
embB4247928p.Leu472Gln1.000
embB4247936p.Thr475Ala1.000
embB4247948p.Val479Leu1.000
embB4247965c.1452C>G1.000
embB4247975p.Val488Ile1.000
embB4248006p.Thr498Asn1.000
embB4248013c.1500A>G1.000
embB4248022p.Leu503Phe1.000
embB4248032c.1519A>C1.000
embB4248037c.1524T>G1.000
embB4248042p.Ala510Gly1.000
embB4248046c.1533A>G1.000
embB4248064c.1551G>C1.000
embB4248070c.1557T>C1.000
embB4248085c.1572T>G1.000
embB4248097c.1584C>G1.000
embB4248118c.1605T>G1.000
embB4248124c.1611G>A1.000
embB4248130c.1617G>C1.000
embB4248133c.1620C>G1.000
embB4248142c.1629T>C1.000
embB4248143c.1630T>C1.000
embB4248148c.1635C>T1.000
embB4248157c.1644A>G1.000
embB4248169c.1656C>A1.000
embB4248185c.1672T>C1.000
embB4248199c.1686A>C1.000
embB4248200p.Ile563Val1.000
embB4248203p.Pro564Ala1.000
embB4248206p.Ser565Gly1.000
embB4248214c.1701C>G1.000
embB4248223c.1710G>C1.000
embB4248232c.1719G>C1.000
embB4248277c.1764G>C1.000
embB4248301c.1788C>T1.000
embB4248316c.1803C>G1.000
embB4248319c.1806A>G1.000
embB4248334c.1821C>G0.714
embB4248349c.1836G>A1.000
embB4248355c.1842A>G1.000
embB4248358c.1845C>T1.000
embB4248362p.Ser617Thr1.000
embB4248394c.1881G>A1.000
embB4248407c.1894T>C1.000
embB4248410p.Phe633Leu1.000
embB4248416p.Leu635Thr1.000
embB4248430c.1917T>C1.000
embB4248448c.1935C>G0.889
embB4248472c.1959T>G1.000
embB4248496c.1983G>C1.000
embB4249102c.2589T>C1.000
embB4249104p.Leu864His1.000
embB4249111c.2598T>C1.000
embB4249117c.2604G>C1.000
embB4249123c.2610C>T1.000
embB4249129c.2616T>C1.000
embB4249132c.2619G>C1.000
embB4249138c.2625C>G1.000
embB4249168c.2655C>A1.000
embB4249174c.2661C>T1.000
embB4249186c.2673G>C1.000
embB4249198c.2685G>A1.000
embB4249204c.2691T>C1.000
embB4249216c.2703A>G1.000
embB4249224p.Met904Lys1.000
embB4249228c.2715G>C1.000
embB4249231c.2718A>T1.000
embB4249237c.2724A>C1.000
embB4249238p.Ala909Pro1.000
embB4249246c.2733A>G1.000
embB4249247p.Pro912Ala1.000
embB4249255c.2742G>A1.000
embB4249267c.2754C>T1.000
embB4249276c.2763A>G1.000
embB4249278p.Tyr922Phe1.000
embB4249282c.2769A>C1.000
embB4249297c.2784G>C0.867
embB4249306c.2793C>T0.846
embB4249315c.2802C>T0.846
embB4249321c.2808A>C1.000
embB4249323p.Ala937Asp1.000
embB4249333c.2820C>G1.000
embB4249339c.2826T>C1.000
embB4249369c.2856T>C1.000
embB4249400p.Val963Leu1.000
embB4249417c.2904A>G1.000
embB4249432c.2919A>G1.000
embB4249433c.2920C>T1.000
embB4249441c.2928A>G1.000
embB4249444c.2931T>C1.000
embB4249447c.2934G>C1.000
embB4249450c.2937C>T1.000
embB4249459c.2946G>A1.000
embB4249486c.2973T>G1.000
embB4249487c.2974T>C1.000
embB4249492c.2979C>G1.000
embB4249498c.2985G>C1.000
embB4249514c.3001C>T1.000
embB4249521p.Ala1003Val1.000
embB4249525c.3012T>C1.000
embB4249529p.Ile1006Val1.000
embB4249532p.Ala1007Thr1.000
embB4249537c.3024A>G1.000
embB4249552c.3039C>T1.000
embB4249558c.3045A>G1.000
embB4249568p.Ser1019Asn1.000
embB4249573c.3060T>C1.000
embB4249594c.3081G>C1.000
embB4249600c.3087A>G1.000
embB4249607p.Thr1032Val1.000
embB4249612c.3099C>T1.000
embB4249618c.3105C>T1.000
embB4249627c.3114G>T1.000
embB4249640c.3127T>C1.000
embB4249654c.3141C>T1.000
embB4249663c.3150C>G1.000
embB4249666c.3153C>T1.000
embB4249669c.3156C>T1.000
embB4249687c.3174C>G1.000
embB4249693c.3180T>C1.000
embB4249699c.3186T>G1.000
embB4249702c.3189C>A1.000
embB4249708c.3195C>T1.000
embB4249709p.Lys1066Gln1.000
embB4249717p.Asp1068Glu1.000
embB4249732c.3219C>G1.000
embB4249735c.3222T>G1.000
embB4249741c.3228C>A1.000
embB4249750p.Glu1079Asp1.000
ethA4326037c.1437C>T1.000
ethA4326042c.1432G>A1.000
ethA4326286c.1188G>A1.000
ethA4326289c.1185G>C1.000
ethA4326298c.1176C>T1.000
ethA4326304c.1170G>C1.000
ethA4326307c.1167G>C1.000
ethA4326310c.1164A>G1.000
ethA4326325c.1149C>G1.000
ethA4326345p.Ile377Leu1.000
ethA4326535c.939C>G1.000
ethA4326541p.Glu311Asp1.000
ethA4326549p.Lys309Gln1.000
ethA4326550c.924C>T1.000
ethA4326556c.918A>G1.000
ethA4326573c.901G>A1.000
ethA4326591c.883A>G1.000
ethA4326597c.877C>T1.000
ethA4326598c.876T>C1.000
ethA4326604c.870G>A1.000
ethA4326610c.864G>T1.000
ethA4326631c.843G>A1.000
ethA4326697c.777G>T1.000
ethA4326703c.771T>C1.000
ethA4326713p.Gln254Arg1.000
ethA4326723p.Ser251Gly1.000
ethA4326727c.747C>T1.000
ethA4326733c.741C>G1.000
ethA4326760c.714T>C1.000
ethA4326765p.Ala237Met1.000
ethA4326768p.Thr236Ala1.000
ethA4326779p.Thr232Asn1.000
ethA4326781c.693C>T1.000
ethA4326784c.690C>G1.000
ethA4326787c.687C>A1.000
ethA4326804p.Lys224Arg1.000
ethA4326808c.666G>A1.000
ethA4326816p.Gly220Ser1.000
ethA4326823p.Asp217Glu1.000
ethA4326832c.642C>G1.000
ethA4326835c.639C>G1.000
ethA4326838c.636G>T1.000
ethA4326847c.627G>C1.000
ethA4326850c.624T>C1.000
ethA4326877c.597G>T1.000
ethA4326880c.594G>C1.000
ethA4326888p.Asp196Asn1.000
ethA4326901c.573C>G1.000
ethA4326904c.570G>C1.000
ethA4326907c.567C>A1.000
ethA4326918p.Thr186Ser1.000
ethA4326919c.555T>G1.000
ethA4326922c.552G>A1.000
ethA4326925c.549A>G1.000
ethA4326942p.Ile178Val1.000
ethA4326950p.Ala175Gly1.000
ethA4326955c.519G>A1.000
ethA4326967c.507C>T1.000
ethA4326996p.Pro160Ser1.000
ethA4326997c.477C>G1.000
ethA4327001p.Val158Ala1.000
ethA4327006c.468A>G1.000
ethA4327011p.Glu155Gln1.000
ethA4327014p.Ser154Ala1.000
ethA4327025p.Arg150Asn1.000
ethA4327032p.Ser148Thr1.000
ethA4327041p.Glu145Gln1.000
ethA4327066c.408C>G1.000
ethA4327072c.402G>C1.000
ethA4327252c.222C>G1.000
ethR4327639p.Ala31Asn1.000
ethR4327644c.96C>G1.000
ethR4327653p.Asn35Lys1.000
ethR4327656c.108T>G1.000
ethR4327672p.Leu42Met1.000
ethR4327676p.Ala43Val1.000
ethR4327680c.132T>C1.000
ethR4327695c.147T>C1.000
ethR4327707c.159C>A1.000
ethR4327713c.165T>C1.000
ethR4327719c.171G>C1.000
ethR4327720c.172A>C1.000
ethR4327725c.177G>C1.000
ethR4327728c.180G>C1.000
ethR4327746c.198A>G1.000
ethR4327758c.210G>A1.000
ethR4327762c.214C>T1.000
ethR4327771c.223C>T1.000
ethR4327862p.Thr105Asn1.000
ethR4327866c.318G>A1.000
ethR4327887c.339A>C1.000
ethR4327893c.345G>A1.000
ethR4328067c.519A>C1.000
ethR4328070c.522G>A1.000
fabG11673300Chromosome:g.1673300 1673483del1

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
This tool is for Research Use Only and is offered free for use. The London School of Hygiene and Tropical Medicine shall have no liability for any loss or damages of any kind, however sustained relating to the use of this tool.
© 2019 London School of Hygiene and Tropical Medicine;