TB Profiler
This tool processes raw sequence data to infer strain type and identify known drug resistance markers.
A stand alone version of this tool is now available and can now be run on linux or mac. Installation instructions can be found on GitHub and on the bioconda page.



This tool is for Research Use Only. Data and information provided through use of this tool are not intended for medical purpose or objective and should not be used for clinical diagnosis, patient management, or human clinical trials.
Back to results page.
Single nucleotide polymorphisms (SNPs) in coding regions are annotated using the reference amino acid, codon number and alternative amino acid (e.g. Ser315Thr in katG). SNPs in non-coding regions (i.e. RNA genes and intergenic regions) are annotated using the reference nucleotide, gene coordinate and alternative nucleotide (e.g. A1401G in rrs or C-37A in eis promoter). Indels are annotated using the reference VCF allele, gene coordinate and alternative VCF allele (e.g. T902TA insertion in katG).
Name: 5da5c73483e05
Sample: 5da5c73483e05

Download results

Summary
ID: 5da5c73483e05
Date: Tue Oct 15 14:23:07 2019
Strain: lineage4.3;lineage2.2;lineage2.2.1
Drug-resistance: Drug-resistant

Drug1ResistanceSupporting Mutations (frequency)
IsoniazidRkatG p.Ile335Thr (0.67), katG p.Ile317Leu (0.75), katG p.Ser315Thr (0.20)
Rifampicin
EthambutolRembB p.His312Arg (0.94), embB p.Leu359Ile (0.97), embB p.Ala388Gly (1.00), embB p.Asn399Asp (1.00), embB p.Ala659Thr (0.92)
Pyrazinamide
StreptomycinRrrs r.462c>t (1.00)
Ethionamide
Fluoroquinolones
Amikacin
Capreomycin
Kanamycin

Lineage2FamilyMain SpoligotypeRDS
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181

Mutations in candidate genes:
GeneChromosome PositionMutationEstimated fraction
gyrB6091c.852G>C0.750
gyrB6100c.861G>C0.941
gyrB6115c.876A>G0.947
gyrB6123p.Ala295Gly0.949
gyrB6127c.888G>C0.950
gyrB6130c.891T>C0.952
gyrB6136c.897G>A0.953
gyrB6139c.900G>C0.954
gyrB6238c.999G>A1.000
gyrB6242p.Arg335Lys1.000
gyrB6250c.1011A>G1.000
gyrB6256c.1017G>A1.000
gyrB6265c.1026C>T1.000
gyrB6268c.1029C>G1.000
gyrB6274c.1035C>T1.000
gyrB6280c.1041T>C1.000
gyrB6286c.1047T>C1.000
gyrB6289c.1050C>T0.987
gyrB6292c.1053G>C0.987
gyrB6307c.1068T>G0.989
gyrB6319c.1080G>C0.989
gyrB6346c.1107C>T0.987
gyrB6361c.1122G>A0.986
gyrB6362c.1123T>C0.986
gyrB6376c.1137G>A0.983
gyrB6379c.1140C>G0.982
gyrB6382c.1143A>G0.982
gyrB6388c.1149T>C0.981
gyrB6403c.1164T>C0.978
gyrB6415c.1176G>C0.974
gyrB6418c.1179C>G0.973
gyrB6427c.1188T>C0.968
gyrB6565c.1326G>C0.905
gyrB6571c.1332T>C0.915
gyrB6577c.1338T>C0.922
gyrB6598c.1359C>G0.941
gyrB6610c.1371C>G0.957
gyrB6613c.1374A>G0.958
gyrB6616c.1377A>G0.946
gyrB6622c.1383C>T0.951
gyrB6634c.1395T>C0.976
gyrB6637c.1398T>G0.976
gyrB6640c.1401A>G0.976
gyrB6649c.1410T>C0.977
gyrB6655c.1416T>C0.967
gyrB6670c.1431G>C0.958
gyrB6673c.1434A>C0.967
gyrB6676c.1437T>G0.967
gyrB6700c.1461T>C0.966
gyrB6703c.1464G>C0.963
gyrB6709c.1470A>G0.962
gyrB6712c.1473G>C0.963
gyrB6728c.1489C>T0.966
gyrB6742c.1503A>G0.966
gyrB6745c.1506T>G0.952
gyrB6751c.1512G>C0.942
gyrB6760c.1521G>C0.939
gyrB6763c.1524G>C0.925
gyrB6775c.1536G>C0.932
gyrB6793c.1554T>C0.930
gyrB6797p.Gly520Thr0.929
gyrB6803c.1564C>T0.929
gyrB6808c.1569C>T0.929
gyrB6811c.1572C>T0.945
gyrB6841c.1602T>C0.828
gyrB6844c.1605T>C0.893
gyrB6850c.1611C>G0.875
gyrB6853c.1614A>G0.818
gyrB6856c.1617T>C0.864
gyrB6859c.1620T>C0.857
gyrB6862c.1623C>G0.857
gyrB6878c.1639T>C0.842
gyrB6881c.1642T>C0.824
gyrB6889c.1650G>C0.880
gyrB6898c.1659G>C0.923
gyrB6901c.1662G>C0.889
gyrB6904c.1665C>G0.929
gyrB6910c.1671G>A0.938
gyrB6916c.1677G>C0.968
gyrB6919c.1680T>C0.971
gyrB6925c.1686T>C0.976
gyrB6931c.1692A>G0.978
gyrB6949c.1710A>G0.964
gyrB6952c.1713C>G0.966
gyrB6967c.1728T>C0.938
gyrB6973c.1734G>C0.938
gyrB6982c.1743A>C0.941
gyrB7007c.1768C>T0.945
gyrB7010c.1771C>T0.942
gyrB7023p.Leu595Gln0.942
gyrB7033c.1794G>C0.939
gyrB7051p.Glu604Asp0.938
gyrB7066c.1827G>C0.944
gyrB7078c.1839A>C0.940
gyrB7084c.1845A>G0.944
gyrB7090c.1851C>T0.957
gyrB7093c.1854T>G0.957
gyrB7099c.1860G>A0.962
gyrB7108c.1869G>A0.975
gyrB7114c.1875C>A0.987
gyrB7124p.Ser629Thr0.986
gyrB7129c.1890T>C0.986
gyrB7132c.1893T>G0.986
gyrB7141c.1902T>C0.988
gyrB7165c.1926C>G0.989
gyrB7178c.1939T>C0.989
gyrB7186c.1947C>G0.988
gyrB7216c.1977G>C0.984
gyrB7228c.1989C>T0.982
gyrB7234c.1995C>T0.980
gyrB7246c.2007T>C0.974
gyrB7252c.2013G>C0.964
gyrB7256c.2017C>T0.963
gyrA7301c.-1G>C0.944
gyrA7307c.6A>T0.944
gyrA7313c.12G>C0.947
gyrA7317c.16T>C0.952
gyrA7334c.33G>C0.970
gyrA7335p.Leu12Val0.971
gyrA7347p.Glu16Gln0.977
gyrA7355c.54T>C1.000
gyrA7361c.60C>T1.000
gyrA7362p.Glu21Gln1.000
gyrA7391c.90C>T1.000
gyrA7394c.93T>C1.000
gyrA7406c.105G>C1.000
gyrA7427c.126G>C0.988
gyrA7433c.132G>A0.989
gyrA7442c.141G>C0.989
gyrA7451c.150C>G0.988
gyrA7457c.156T>C0.989
gyrA7475c.174A>G0.988
gyrA7480p.Phe60Tyr0.987
gyrA7484c.183T>C0.986
gyrA7514c.213C>G0.986
gyrA7523c.222C>A0.983
gyrA7532c.231T>C0.981
gyrA7541c.240C>G0.980
gyrA7547c.246C>T0.979
gyrA7562c.261C>T0.925
gyrA7571c.270G>C0.919
gyrA7585p.Ser95Thr1.000
gyrA7595c.294C>G0.897
gyrA7601c.300C>G0.880
gyrA7607c.306C>G0.870
gyrA7622c.321C>T0.583
gyrA7625c.324G>C0.700
gyrA7631c.330G>C0.812
gyrA7637c.336C>G0.842
gyrA7652c.351C>T0.840
gyrA7658c.357A>G0.889
gyrA7664c.363T>C0.893
gyrA7673c.372G>A0.900
gyrA7683c.382A>C0.914
gyrA7694c.393A>G0.923
gyrA7697c.396C>G0.923
gyrA7710c.409T>C0.946
gyrA7715c.414G>C0.946
gyrA7721c.420G>A0.946
gyrA7725c.424C>T0.946
gyrA7728c.427A>C0.946
gyrA7739c.438C>T0.964
gyrA7763c.462T>C0.986
gyrA7784c.483A>G0.988
gyrA7793c.492G>C0.986
gyrA7796c.495G>C0.987
gyrA7799c.498A>G0.987
gyrA7814c.513C>G0.988
gyrA7823c.522G>C0.987
gyrA7832c.531G>T0.986
gyrA7835c.534A>G0.986
gyrA7853c.552C>G0.957
gyrA7859c.558A>G0.969
gyrA7865c.564T>C0.969
gyrA7886c.585T>C0.961
gyrA8069c.768T>C1.000
gyrA8078c.777A>G0.978
gyrA8090c.789C>A0.982
gyrA8096c.795T>A0.982
gyrA8099c.798T>C0.984
gyrA8111c.810G>C0.987
gyrA8121c.820T>C0.988
gyrA8129c.828T>C0.989
gyrA8135c.834C>G0.970
gyrA8156c.855T>C0.960
gyrA8168c.867A>G0.955
gyrA8177c.876A>C0.954
gyrA8189c.888G>C0.934
gyrA8198c.897T>C0.932
gyrA8207c.906T>C0.922
gyrA8219c.918T>C0.920
gyrA8225c.924T>C0.933
gyrA8234c.933T>C0.924
gyrA8237c.936A>G0.923
gyrA8247p.Ile316Val0.912
gyrA8264c.963T>C0.872
gyrA8267c.966G>C0.870
gyrA8270c.969G>T0.870
gyrA8276c.975G>A0.857
gyrA8283p.Ile328Leu0.895
gyrA8288c.987T>C0.889
gyrA8294c.993T>C0.902
gyrA8324c.1023T>C0.936
gyrA8330c.1029C>G0.955
gyrA8337c.1036C>T0.946
gyrA8342c.1041G>C0.943
gyrA8357c.1056G>A0.963
gyrA8366c.1065G>T0.941
gyrA8367c.1066C>T0.941
gyrA8372c.1071G>C0.941
gyrA8375c.1074G>C0.941
gyrA8382p.Leu361Met0.941
gyrA8391p.Tyr364His0.941
gyrA8399c.1098T>C0.941
gyrA8400p.Asp367Asn0.941
gyrA8417c.1116C>G0.979
gyrA8420c.1119T>C0.981
gyrA8423c.1122G>C0.981
gyrA8453c.1152A>C0.979
gyrA8459c.1158G>A0.977
gyrA8462c.1161A>C0.977
gyrA8465c.1164C>G0.977
gyrA8471c.1170T>C0.977
gyrA8472c.1171C>T0.977
gyrA8480c.1179C>A0.977
gyrA8486c.1185T>C1.000
gyrA8489c.1188A>G1.000
gyrA8504c.1203G>C1.000
gyrA8516c.1215T>C0.977
gyrA8519c.1218A>C0.977
gyrA8520c.1219C>T0.977
gyrA8528c.1227G>C0.981
gyrA8543c.1242C>G0.980
gyrA8546c.1245T>C0.979
gyrA8553c.1252C>A0.978
gyrA8561c.1260A>C0.975
gyrA8579p.Asp426Glu0.980
gyrA8588c.1287G>A0.979
gyrA8603c.1302A>G0.983
gyrA8619c.1318T>C0.985
gyrA8624c.1323G>C0.986
gyrA8636c.1335A>C0.986
gyrA8642c.1341A>G0.986
gyrA8672c.1371A>G1.000
gyrA8678c.1377G>A1.000
gyrA8693c.1392T>C1.000
gyrA8696c.1395G>C1.000
gyrA8699c.1398A>G1.000
gyrA8708c.1407G>C1.000
gyrA8711c.1410A>C1.000
gyrA8714c.1413A>G1.000
gyrA8762c.1461G>C1.000
gyrA8767p.Arg489Lys1.000
gyrA8780p.Asp493Glu1.000
gyrA8786c.1485T>C1.000
gyrA8801c.1500G>C1.000
gyrA8807c.1506C>T1.000
gyrA8810c.1509A>G1.000
gyrA8816c.1515C>G1.000
gyrA8818p.Ser506Asn1.000
gyrA8828c.1527T>C1.000
gyrA8829c.1528T>C1.000
gyrA8852c.1551T>C1.000
gyrA8858c.1557T>C1.000
gyrA8867c.1566A>G1.000
gyrA8870c.1569G>C1.000
gyrA8873c.1572A>C1.000
gyrA8891c.1590G>A1.000
gyrA8897c.1596T>C1.000
gyrA8903c.1602T>C0.990
gyrA8933c.1632G>C0.989
gyrA8946c.1645T>C0.987
gyrA8966c.1665C>G0.965
gyrA8967p.Ala556Arg0.932
gyrA8987c.1686C>A0.955
gyrA8990c.1689C>G0.955
gyrA8996c.1695T>C0.952
gyrA8998p.Leu566Trp0.952
gyrA9017c.1716C>G0.943
gyrA9023c.1722A>G0.935
gyrA9029c.1728T>C0.917
gyrA9032c.1731T>C0.905
gyrA9050p.Asp583Glu0.846
gyrA9051c.1750T>C0.833
gyrA9056c.1755C>G0.818
gyrA9062c.1761C>G0.800
gyrA9065c.1764C>G0.800
gyrA9068c.1767G>C0.800
gyrA9071c.1770G>C0.833
gyrA9080c.1779G>T0.935
gyrA9089c.1788G>C0.941
gyrA9099c.1798T>C0.947
gyrA9104c.1803C>G0.949
gyrA9119c.1818A>G0.960
gyrA9122c.1821C>A0.963
gyrA9143c.1842T>C0.954
gyrA9153p.Thr618Glu0.948
gyrA9158c.1857C>T0.947
gyrA9161c.1860C>G0.948
gyrA9182c.1881T>C0.964
gyrA9191c.1890G>C0.965
gyrA9200c.1899A>G0.976
gyrA9204p.Ser635Thr0.976
gyrA9224c.1923C>T0.977
gyrA9230c.1929T>C0.976
gyrA9233c.1932C>G0.976
gyrA9239c.1938C>T0.966
gyrA9252p.Val651Ile0.978
gyrA9284c.1983T>C0.960
gyrA9291c.1990C>T0.964
gyrA9296c.1995T>C0.962
gyrA9299c.1998G>C0.959
gyrA9300p.Ala667Ser0.959
gyrA9304p.Gly668Glu1.000
gyrA9308p.Asp669Glu0.959
gyrA9323c.2022C>G0.958
gyrA9335c.2034G>C0.955
gyrA9344c.2043C>T0.952
gyrA9359c.2058C>T0.944
gyrA9365c.2064G>A0.938
gyrA9374c.2073G>C0.909
gyrA9377c.2076A>G0.895
gyrA9383c.2082T>G0.895
gyrA9386c.2085T>C0.867
gyrA9395c.2094G>C0.800
gyrA9398c.2097T>C0.800
rpoB759606c.-201T>C1.000
rpoB759629c.-178T>C1.000
rpoB759644c.-163T>A1.000
rpoB759647c.-160T>C1.000
rpoB759656c.-151A>C0.964
rpoB759657c.-150G>C1.000
rpoB759659c.-148T>A1.000
rpoB759660c.-147T>C1.000
rpoB759662c.-145C>T1.000
rpoB759667c.-140C>T1.000
rpoB759670c.-137C>T1.000
rpoB759671c.-136G>T1.000
rpoB759672c.-135G>C1.000
rpoB759683c.-124T>C1.000
rpoB759701c.-106A>T1.000
rpoB759715c.-92GA>G1.000
rpoB760040c.234T>C1.000
rpoB760046c.240G>C1.000
rpoB760060p.Tyr85Leu0.960
rpoB760067c.261G>C0.963
rpoB760070c.264T>G0.964
rpoB760091c.285G>C0.978
rpoB760101c.295T>C0.980
rpoB760112c.306T>C0.983
rpoB760118c.312T>G0.983
rpoB760121c.315T>C0.984
rpoB760130p.Asp108Glu0.985
rpoB760139c.333A>G0.986
rpoB760142c.336C>G0.987
rpoB760181c.375T>C0.988
rpoB760184c.378A>G0.988
rpoB760196c.390C>G0.989
rpoB760223c.417T>C1.000
rpoB760235c.429T>C0.989
rpoB760283c.477G>C1.000
rpoB760298c.492G>C1.000
rpoB760307c.501T>C0.989
rpoB760310c.504G>C0.989
rpoB760328c.522G>C0.989
rpoB760331c.525G>C0.989
rpoB760340c.534G>T0.978
rpoB760361c.555T>C0.989
rpoB760370c.564C>G0.988
rpoB760376p.Asp190Glu0.988
rpoB760380p.Thr192Leu0.988
rpoB760406c.600G>C0.980
rpoB760412c.606C>G0.981
rpoB760424c.618C>G0.982
rpoB760430c.624T>C0.982
rpoB760475c.669A>G0.991
rpoB760481c.675G>C0.991
rpoB760484c.678A>G0.991
rpoB760522p.Ser239Asn0.991
rpoB760532c.726T>C0.989
rpoB760533p.Val243Thr0.989
rpoB760541c.735G>C0.990
rpoB760547c.741G>C0.991
rpoB760563p.Arg253Met1.000
rpoB760591p.Val262Ala1.000
rpoB760611c.805T>C1.000
rpoB760646c.840C>G1.000
rpoB760655c.849A>G1.000
rpoB760661c.855A>C1.000
rpoB760670c.864G>C1.000
rpoB760674c.868T>C0.989
rpoB760679c.873A>G0.989
rpoB760683c.877T>C0.989
rpoB760715c.909C>G0.987
rpoB760718c.912C>T0.986
rpoB760724c.918T>C0.986
rpoB760730c.924T>C0.986
rpoB760751c.945G>C0.983
rpoB760757c.951T>C0.976
rpoB760759p.Val318Ala0.974
rpoB760769c.963C>G0.972
rpoB760775c.969G>C0.970
rpoB760776c.970T>A0.970
rpoB760793c.987A>G0.970
rpoB760805c.999G>C0.963
rpoB760817c.1011A>G0.929
rpoB760869p.Val355Ile1.000
rpoB760886c.1080A>G1.000
rpoB760925c.1119T>C1.000
rpoB760928c.1122G>C0.988
rpoB760934c.1128C>T1.000
rpoB760946c.1140A>G1.000
rpoB760949c.1143C>T1.000
rpoB760982c.1176G>C1.000
rpoB760985c.1179G>C1.000
rpoB760991c.1185G>C1.000
rpoB761006c.1200C>G1.000
rpoB761015c.1209G>C1.000
rpoB761021c.1215G>C1.000
rpoB761027c.1221A>G1.000
rpoB761036c.1230G>C1.000
rpoB761037c.1231T>C1.000
rpoB761057c.1251G>C0.991
rpoB761102c.1296A>G0.990
rpoB761129c.1323G>C0.988
rpoB761132c.1326G>T0.976
rpoB761133c.1327T>C0.976
rpoB761150c.1344A>C0.989
rpoB761153c.1347G>C0.990
rpoB761165c.1359G>C0.990
rpoB761180c.1374A>C0.990
rpoB761189c.1383T>C0.990
rpoB761195c.1389G>C0.990
rpoB761207c.1401C>T1.000
rpoB761213c.1407G>C1.000
rpoB761219c.1413G>C1.000
rpoB761249c.1443A>G1.000
rpoB761255c.1449T>G1.000
rpoB761261c.1455G>T1.000
rpoB761306c.1500C>G1.000
rpoB761327c.1521A>G0.990
rpoB761330c.1524G>C1.000
rpoB761354c.1548C>T1.000
rpoB761360c.1554T>C1.000
rpoB761362p.Ser519Thr1.000
rpoB761373p.Val523His0.976
rpoB761408c.1602G>C0.960
rpoB761414c.1608A>G0.958
rpoB761423c.1617T>C0.956
rpoB761435c.1629T>C0.900
rpoB761438c.1632G>C0.907
rpoB761439p.Asp545Lys0.907
rpoB761444c.1638T>C0.907
rpoB761447c.1641C>G0.886
rpoB761452p.Val549Glu0.886
rpoB761457p.Pro551Ser0.891
rpoB761477c.1671C>G0.943
rpoB761492c.1686G>C0.940
rpoB761510c.1704T>C0.941
rpoB761537c.1731C>G0.987
rpoB761570c.1764T>C0.975
rpoB761573c.1767C>G0.975
rpoB761579c.1773G>C0.974
rpoB761588c.1782C>T0.958
rpoB761606c.1800C>G0.974
rpoB761612c.1806G>C0.973
rpoB761615c.1809A>C0.959
rpoB761636c.1830G>T0.959
rpoB761639c.1833G>A0.958
rpoB761645c.1839C>G0.944
rpoB761648c.1842T>C0.944
rpoB761657c.1851C>G0.946
rpoB761675c.1869G>C0.947
rpoB761720c.1914C>G0.921
rpoB761725p.Glu640Ala0.921
rpoB761732c.1926C>G0.925
rpoB761735c.1929C>G0.950
rpoB761747c.1941G>C0.966
rpoB761750c.1944G>C0.966
rpoB761765c.1959T>C0.985
rpoB761772p.His656Ala0.984
rpoB761778p.Asn658Asp0.985
rpoB761791p.Arg662His0.986
rpoB761813c.2007T>C1.000
rpoB761815p.Ala670Glu0.984
rpoB761834c.2028T>C1.000
rpoB761848p.Cys681Ser1.000
rpoB761852c.2046C>G1.000
rpoB761858c.2052G>C1.000
rpoB761873c.2067A>C1.000
rpoB761885c.2079T>C1.000
rpoB761906c.2100C>G0.986
rpoB761909c.2103T>C1.000
rpoB761912c.2106T>C1.000
rpoB761915p.Asp703Glu1.000
rpoB761916p.Asp704Asn1.000
rpoB761948c.2142G>C1.000
rpoB761954c.2148C>G0.978
rpoB762008c.2202C>T0.957
rpoB762014c.2208C>T0.954
rpoB762017c.2211A>G0.953
rpoB762053c.2247T>C0.951
rpoB762062c.2256T>C0.948
rpoB762065c.2259T>C0.946
rpoB762083c.2277T>C0.947
rpoB762086c.2280G>C0.950
rpoB762101c.2295C>G0.964
rpoB762114p.Ile770Val0.977
rpoB762131c.2325C>G0.988
rpoB762140c.2334G>C0.988
rpoB762143c.2337T>C0.988
rpoB762149c.2343G>C0.989
rpoB762167c.2361T>C0.989
rpoB762176c.2370T>C0.989
rpoB762185c.2379G>C0.989
rpoB762206c.2400C>G0.970
rpoB762233c.2427G>C0.980
rpoB762246c.2440C>T0.980
rpoB762254c.2448T>G0.978
rpoB762257c.2451C>G0.979
rpoB762266c.2460T>C0.979
rpoB762284c.2478G>C0.979
rpoB762293c.2487T>C0.979
rpoB762314c.2508C>T0.977
rpoB762317c.2511A>G0.976
rpoB762329c.2523G>C0.979
rpoB762338c.2532T>C1.000
rpoB762347c.2541T>C1.000
rpoB762362p.Glu852Asp1.000
rpoB762369c.2563T>C1.000
rpoB762398c.2592T>C0.986
rpoB762401c.2595G>C0.986
rpoB762404c.2598T>C0.986
rpoB762410c.2604T>C0.987
rpoB762416c.2610A>G0.987
rpoB762419c.2613C>G0.988
rpoB762434c.2628T>C0.988
rpoB762449c.2643C>A0.977
rpoB762467c.2661C>T0.989
rpoB762488c.2682G>C0.957
rpoB762489p.Val895Gln0.957
rpoB762509c.2703T>G0.921
rpoB762510p.Ala902Pro0.921
rpoB762521c.2715C>T0.959
rpoB762533c.2727T>C0.955
rpoB762536c.2730T>C0.953
rpoB762537c.2731T>C0.953
rpoB762551c.2745C>G0.966
rpoB762581c.2775T>C0.925
rpoB762582c.2776T>C0.921
rpoB762729p.Gln975Lys0.800
rpoB762736p.Ala977Glu0.923
rpoB762744p.Gln980Ala0.929
rpoB762750p.Leu982Met0.938
rpoB762753c.2947T>C0.944
rpoB762758c.2952G>C0.950
rpoB762782c.2976T>C0.982
rpoB762785p.Asp993Glu0.982
rpoB762788c.2982G>C0.964
rpoB762789p.Leu995Met0.964
rpoB762794c.2988C>G0.966
rpoB762799p.Ala998Gly0.966
rpoB762810p.Ala1002Ser0.967
rpoB762813p.Met1003Val0.967
rpoB762818c.3012C>G0.968
rpoB762827c.3021G>C0.978
rpoB762857c.3051C>G0.989
rpoB762860c.3054G>C0.989
rpoB762863c.3057T>C0.989
rpoB762929c.3123G>C0.978
rpoB762989c.3183G>C0.989
rpoB763013c.3207C>G0.989
rpoB763028c.3222T>C0.987
rpoB763031c.3225T>G1.000
rpoB763034c.3228C>G0.988
rpoB763040c.3234C>G0.989
rpoB763070c.3264T>C0.988
rpoB763085c.3279C>G0.989
rpoB763115c.3309T>C0.979
rpoB763136c.3330C>T0.981
rpoB763148c.3342G>C0.981
rpoB763158c.3352C>T0.973
rpoB763166c.3360A>G0.974
rpoB763190c.3384C>T0.972
rpoB763202c.3396A>G0.961
rpoB763205c.3399G>C0.959
rpoB763206c.3400A>T0.959
rpoB763214c.3408T>C0.966
rpoB763226c.3420A>G0.966
rpoB763227c.3421C>T0.966
rpoB763238c.3432T>C0.988
rpoB763253c.3447G>C0.987
rpoB763256c.3450G>A0.986
rpoB763268c.3462C>G0.984
rpoB763283c.3477T>C0.980
rpoB763284c.3478C>T0.980
rpoC763351c.-19T>C1.000
rpoC763352c.-18T>A1.000
rpoC763402c.33C>G1.000
rpoC763411c.42T>G1.000
rpoC763414c.45T>C1.000
rpoC763441c.72C>T1.000
rpoC763444c.75T>C1.000
rpoC763456c.87A>G1.000
rpoC763486c.117T>G1.000
rpoC763528c.159G>A1.000
rpoC763546c.177A>G1.000
rpoC763570c.201G>C1.000
rpoC763573c.204G>C1.000
rpoC763594c.225C>T1.000
rpoC763633c.264T>C0.988
rpoC763636c.267T>C0.989
rpoC763660c.291T>G0.978
rpoC763675c.306C>G0.979
rpoC763696c.327T>C0.979
rpoC763702c.333C>G0.979
rpoC763717c.348T>C0.979
rpoC763723c.354G>C0.979
rpoC763732c.363C>G0.977
rpoC763741c.372C>T0.976
rpoC763744c.375G>C0.976
rpoC763765c.396T>C0.975
rpoC763774c.405G>C0.989
rpoC763807c.438T>C1.000
rpoC763816c.447C>G1.000
rpoC763835p.Ala156Met1.000
rpoC763853p.Val162Ile1.000
rpoC763858c.489A>G1.000
rpoC763872p.Gly168Ala1.000
rpoC763876p.Glu169Asp1.000
rpoC763877c.508C>T1.000
rpoC763888c.519G>C1.000
rpoC763891c.522G>C1.000
rpoC763894c.525A>G1.000
rpoC763900c.531G>C1.000
rpoC763936c.567C>G0.991
rpoC763945c.576T>C0.991
rpoC763951c.582G>C0.983
rpoC763960c.591T>C0.983
rpoC763991p.Ile208Leu0.979
rpoC763996c.627T>C0.979
rpoC764002c.633C>G0.979
rpoC764005c.636G>C0.979
rpoC764024c.655T>C0.979
rpoC764032p.Asp221Glu0.978
rpoC764040p.Ser224Thr0.976
rpoC764044c.675T>C0.977
rpoC764059c.690G>T0.990
rpoC764083c.714A>G0.988
rpoC764098c.729A>G0.987
rpoC764101c.732C>G1.000
rpoC764102p.Val245Ile1.000
rpoC764112p.Tyr248Phe1.000
rpoC764116c.747C>T1.000
rpoC764131c.762T>C1.000
rpoC764140c.771C>T1.000
rpoC764188c.819A>G1.000
rpoC764195p.Ser276Ile1.000
rpoC764203c.834G>C1.000
rpoC764206c.837T>C1.000
rpoC764215c.846A>G1.000
rpoC764236c.867G>A1.000
rpoC764248c.879C>G0.989
rpoC764257c.888G>C0.989
rpoC764266c.897T>C0.987
rpoC764269c.900G>C0.987
rpoC764272c.903G>C0.987
rpoC764278c.909A>G0.988
rpoC764338c.969G>A0.987
rpoC764353c.984G>C0.987
rpoC764365c.996C>T0.986
rpoC764380c.1011G>C0.963
rpoC764381c.1012T>A0.962
rpoC764387c.1018T>C0.963
rpoC764405c.1036A>C0.987
rpoC764419c.1050C>G0.976
rpoC764428c.1059G>C0.975
rpoC764431c.1062G>C0.975
rpoC764434c.1065A>G0.976
rpoC764446c.1077T>C0.963
rpoC764449c.1080G>C0.950
rpoC764452c.1083T>C0.963
rpoC764458c.1089G>C0.965
rpoC764461c.1092A>G0.966
rpoC764489c.1120C>T0.971
rpoC764497c.1128A>G0.972
rpoC764510c.1141C>T0.972
rpoC764521c.1152T>C0.971
rpoC764527c.1158C>T0.981
rpoC764536c.1167G>C0.972
rpoC764539c.1170C>G0.973
rpoC764554c.1185C>T0.980
rpoC764560c.1191T>C0.980
rpoC764566c.1197C>G0.979
rpoC764575c.1206T>G0.989
rpoC764581c.1212T>C0.978
rpoC764593c.1224C>T1.000
rpoC764611c.1242G>T1.000
rpoC764650c.1281G>C0.986
rpoC764651c.1282T>A0.986
rpoC764752c.1383G>C0.944
rpoC764764c.1395T>C0.940
rpoC764809c.1440C>T0.967
rpoC764815c.1446A>G0.968
rpoC764827c.1458G>C0.989
rpoC764858c.1489T>C0.978
rpoC764872c.1503A>G0.979
rpoC764888c.1519T>C0.990
rpoC764911c.1542A>G0.989
rpoC764932c.1563C>A0.988
rpoC764935c.1566T>C0.987
rpoC764948c.1579T>C0.987
rpoC764968c.1599T>C0.987
rpoC764995c.1626C>G0.967
rpoC765019c.1650A>G0.960
rpoC765034c.1665T>C0.958
rpoC765040c.1671T>C0.954
rpoC765041c.1672T>C0.953
rpoC765047c.1678T>C0.953
rpoC765053c.1684T>A0.954
rpoC765073c.1704G>C0.960
rpoC765076c.1707A>G0.959
rpoC765079c.1710T>G0.959
rpoC765082c.1713G>C0.961
rpoC765089c.1720T>C0.963
rpoC765103c.1734G>T0.962
rpoC765208c.1839T>G1.000
rpoC765220c.1851A>G1.000
rpoC765233p.Ala622Ser1.000
rpoC765241c.1872C>T1.000
rpoC765244c.1875T>C1.000
rpoC765247c.1878C>G1.000
rpoC765248c.1879T>C1.000
rpoC765251c.1882A>T1.000
rpoC765292c.1923G>C1.000
rpoC765298c.1929G>C0.987
rpoC765300p.Val644Ala1.000
rpoC765319c.1950A>G1.000
rpoC765326p.His653Ala1.000
rpoC765329p.Ser654Gly1.000
rpoC765346c.1977C>G1.000
rpoC765349c.1980T>C1.000
rpoC765352c.1983G>C1.000
rpoC765383p.Met672Leu1.000
rpoC765404p.Leu679Val1.000
rpoC765409c.2040T>C1.000
rpoC765421c.2052C>G1.000
rpoC765478c.2109T>C1.000
rpoC765499c.2130C>G1.000
rpoC765529c.2160C>T0.991
rpoC765541c.2172C>G0.991
rpoC765553c.2184C>T0.989
rpoC765556c.2187G>C0.990
rpoC765559c.2190G>C0.990
rpoC765580c.2211G>C0.989
rpoC765613p.His748Gln0.989
rpoC765625c.2256C>G0.989
rpoC765631p.Asp754Glu0.989
rpoC765700c.2331T>C1.000
rpoC765734c.2365T>C1.000
rpoC765739c.2370G>T1.000
rpoC765751c.2382C>G0.989
rpoC765753p.Asp795Ala0.988
rpoC765772c.2403C>G0.981
rpoC765784c.2415C>G0.979
rpoC765787c.2418C>T0.979
rpoC765793c.2424C>G0.979
rpoC765796c.2427C>T0.979
rpoC765811c.2442T>C0.978
rpoC765814c.2445A>G0.979
rpoC765826c.2457T>C0.978
rpoC765835c.2466C>T0.978
rpoC765850c.2481G>C0.978
rpoC765883c.2514C>G0.967
rpoC765886c.2517C>G0.967
rpoC765892c.2523T>C0.968
rpoC765937c.2568T>C0.959
rpoC765967c.2598C>T0.963
rpoC765982c.2613C>G0.966
rpoC765994c.2625A>T0.967
rpoC766010c.2641T>A0.968
rpoC766021c.2652G>C0.972
rpoC766027c.2658G>C0.980
rpoC766030c.2661C>G0.979
rpoC766036c.2667C>T0.980
rpoC766043p.Gln892Glu0.980
rpoC766054c.2685C>G0.990
rpoC766082p.Ala905Gln1.000
rpoC766096c.2727G>C1.000
rpoC766129c.2760C>G0.988
rpoC766135c.2766G>A0.987
rpoC766141c.2772C>T0.986
rpoC766142c.2773C>T0.986
rpoC766168c.2799C>T0.979
rpoC766174p.Asn935Lys0.976
rpoC766178p.Ile937Val0.929
rpoC766274p.Ala969Thr0.727
rpoC766280p.Ser971Gly0.722
rpoC766288c.2919C>G0.773
rpoC766303c.2934C>T0.853
rpoC766312c.2943T>G0.875
rpoC766327c.2958C>A0.900
rpoC766345c.2976T>C0.922
rpoC766348c.2979A>G0.926
rpoC766357c.2988C>T0.959
rpoC766363c.2994G>C0.974
rpoC766381c.3012C>T0.966
rpoC766384c.3015A>G0.966
rpoC766408c.3039C>G0.981
rpoC766411c.3042C>G0.981
rpoC766426c.3057C>T0.980
rpoC766447c.3078T>C1.000
rpoC766462c.3093G>C0.989
rpoC766483c.3114G>C0.985
rpoC766484p.Val1039Ile0.985
rpoC766492c.3123T>C0.988
rpoC766522c.3153C>G0.976
rpoC766528c.3159T>C0.976
rpoC766531c.3162G>C0.975
rpoC766540p.Asp1057Glu0.965
rpoC766549c.3180G>C0.965
rpoC766573c.3204T>C0.967
rpoC766582c.3213C>G0.959
rpoC766583p.Gly1072Ser0.958
rpoC766591c.3222A>G0.958
rpoC766594c.3225G>C0.958
rpoC766597c.3228C>G0.961
rpoC766607p.Ile1080Leu0.981
rpoC766630c.3261G>C0.971
rpoC766657c.3288A>G0.980
rpoC766672c.3303T>C0.978
rpoC766673p.Gly1102Asn0.978
rpoC766726c.3357T>C0.989
rpoC766738c.3369G>C0.990
rpoC766765c.3396A>C1.000
rpoC766774c.3405T>C1.000
rpoC766801c.3432C>G0.990
rpoC766804c.3435A>G0.990
rpoC766861c.3492G>C0.971
rpoC766864c.3495G>C0.971
rpoC766867c.3498C>G0.971
rpoC766876c.3507C>T0.972
rpoC766882c.3513C>T0.971
rpoC766894c.3525T>C0.965
rpoC766895c.3526T>C0.965
rpoC766900c.3531T>C0.966
rpoC766933c.3564A>G0.967
rpoC766945c.3576A>G0.978
rpoC766963c.3594T>C0.977
rpoC766972c.3603G>C0.976
rpoC766987c.3618G>C0.976
rpoC766996c.3627C>T0.976
rpoC767009c.3640T>A1.000
rpoC767014c.3645G>C0.972
rpoC767033c.3664T>A0.976
rpoC767059c.3690T>G0.978
rpoC767062c.3693C>A0.946
rpoC767098c.3729T>C0.951
rpoC767119c.3750A>G0.952
rpoC767134c.3765C>A0.933
rpoC767158c.3789T>G0.930
rpoC767180p.Ala1271Gln0.946
rpoC767191c.3822C>G0.948
rpoC767206c.3837C>G0.943
rpoC767209c.3840T>C0.942
rpoC767212c.3843G>C0.954
rpoC767221c.3852C>G0.957
rpoC767230c.3861G>C0.934
rpoC767233c.3864T>C0.932
rpoC767263c.3894T>C0.885
rpoC767264p.Ala1299Gln0.885
rpoC767275c.3906T>C0.880
rpoC767278c.3909T>C0.880
rpoC767281c.3912C>G0.898
rpoC767284c.3915C>T0.917
rpsL781571c.12C>T1.000
rpsL781595c.36T>C1.000
rpsL781605p.Ile16Val1.000
rpsL781608p.Ser17Ala1.000
rpsL781628c.69T>C1.000
rpsL781631c.72G>C1.000
rpsL781649c.90T>C1.000
rpsL781655c.96T>C1.000
rpsL781700c.141G>C0.990
rpsL781703c.144G>T0.981
rpsL781715c.156T>C0.990
rpsL781728c.169T>C0.990
rpsL781736c.177T>C0.990
rpsL781742c.183C>T0.979
rpsL781748c.189C>G0.979
rpsL781754c.195G>C0.978
rpsL781760c.201T>C0.978
rpsL781772c.213C>A0.978
rpsL781808c.249C>T0.978
rpsL781811c.252C>T0.978
rpsL781832c.273T>C0.978
rpsL781838c.279G>C0.976
rpsL781841c.282C>G0.976
rpsL781865c.306G>C0.976
rpsL781868c.309T>C0.976
rpsL781871c.312G>C0.976
rpsL781877c.318T>C0.978
rpsL781892c.333A>G0.989
rpsL781898c.339A>T0.989
rpsL781916c.357T>C0.988
rpsL781929p.Gly124Ser0.988
rplC800794c.-15A>G0.989
rplC800796c.-13A>G0.989
rplC800814c.6A>G0.990
rplC800817c.9A>T0.990
rplC800844c.36T>C0.989
rplC800865c.57A>G0.982
rplC800867p.Ser20Asn0.982
rplC800874c.66A>G0.980
rplC800875p.Val23Ile0.980
rplC800880c.72A>G0.980
rplC800889c.81C>G0.980
rplC800892c.84G>C0.980
rplC800907c.99C>G0.959
rplC800916c.108A>G0.947
rplC800934c.126C>G0.941
rplC800937c.129A>G0.933
rplC800939p.Arg44Gln0.933
rplC800946c.138T>C0.933
rplC800949c.141T>C0.933
rplC801127p.Ala107Thr0.964
rplC801132c.324T>C0.966
rplC801147c.339T>C1.000
rplC801150c.342G>C1.000
rplC801153c.345G>C1.000
rplC801156c.348T>A1.000
rplC801168c.360C>G0.942
rplC801171c.363A>G0.944
rplC801174c.366T>C0.946
rplC801180c.372C>G0.955
rplC801195c.387G>C0.964
rplC801201c.393C>T0.954
rplC801207c.399C>T0.955
rplC801246c.438C>T0.951
rplC801249c.441T>C0.950
rplC801255c.447C>T0.950
rplC801264c.456C>T0.934
rplC801267c.459A>T0.932
rplC801270c.462T>C0.931
rplC801276c.468G>C0.931
rplC801279c.471G>C0.931
rplC801282c.474G>C0.932
rplC801285c.477G>C0.933
rplC801300c.492C>G0.955
rplC801309c.501C>G0.951
rplC801312c.504G>C0.950
rplC801321c.513C>T0.987
rplC801324c.516T>C0.988
rplC801339c.531T>C0.984
rplC801341p.Leu178Gln0.983
rplC801348c.540T>G0.986
rplC801357c.549T>C1.000
rplC801367p.Ala187Thr1.000
rplC801402c.594T>C0.976
rplC801405c.597T>C0.988
rplC801423c.615G>C0.985
rplC801426c.618C>G0.985
rplC801427p.Met207Val0.985
rplC801438c.630T>C0.984
rplC801442p.Ile212Val0.984
rrs1471923r.78t>c0.976
rrs1471925r.80t>c0.975
rrs1471932r.87a>g0.974
rrs1471934r.89a>g0.975
rrs1471969r.124t>c0.988
rrs1471970r.125g>a0.988
rrs1472028r.183a>t0.979
rrs1472029r.184c>t0.978
rrs1472030r.185g>t0.978
rrs1472031r.186g>a0.978
rrs1472034r.189t>c0.979
rrs1472044r.199g>t0.966
rrs1472053r.208agc>a0.967
rrs1472061r.216a>t0.969
rrs1472075r.230a>g0.969
rrs1472108r.263c>t0.971
rrs1472300r.455c>t1.000
rrs1472969r.1124a>g0.985
rrs1472970r.1125c>g0.985
rrs1472977r.1132g>c0.985
rrs1472978r.1133t>c0.985
rrs1473105r.1260g>a0.988
rrs1473120r.1275c>ct0.882
rrs1473123r.1278a>t0.985
rrs1473145r.1300c>t0.986
rrs1473166r.1321g>a0.986
rrs1473290r.1445c>t0.987
rrl1473401c.-257G>A1.000
rrl1473403c.-255C>T1.000
rrl1473408c.-250C>T1.000
rrl1473417c.-241C>T0.968
rrl1473419c.-239T>C0.968
rrl1473420c.-238A>G0.968
rrl1473421c.-237G>A0.968
rrl1473437c.-221T>C0.968
rrl1473449c.-209G>A0.923
rrl1473452c.-206A>G0.917
rrl1473455c.-203G>A0.905
rrl1473651c.-7GT>G0.950
rrl1473658r.1t>a0.951
rrl1473659r.2t>a0.951
rrl1473668r.11c>t0.957
rrl1473756r.99g>a0.987
rrl1473758r.101g>t0.987
rrl1473806r.149c>t1.000
rrl1473877r.220g>a0.974
rrl1473898r.241c>t0.973
rrl1473899r.242a>c0.973
rrl1473938r.281g>a0.961
rrl1473939r.282c>t0.960
rrl1473943r.286g>t0.962
rrl1473981r.324g>t0.958
rrl1473986r.329t>c0.955
rrl1473987r.330g>a0.955
rrl1473995r.338g>t0.959
rrl1474001r.344c>t0.975
rrl1474009r.352a>g0.976
rrl1474012r.355c>t0.975
rrl1474044r.387c>t0.986
rrl1474054r.397t>c0.984
rrl1474091r.434c>t1.000
rrl1474093r.436g>t1.000
rrl1474099r.442g>a1.000
rrl1474103r.446a>t1.000
rrl1474140r.483c>t1.000
rrl1474151r.494c>t1.000
rrl1474181r.524c>t0.986
rrl1474249r.592g>t1.000
rrl1474291r.634tttcctctccggagga>t1.000
rrl1474308r.651g>t0.939
rrl1474310r.653t>g0.939
rrl1474356r.699t>c0.955
rrl1474362r.705a>g0.956
rrl1474376r.719t>c0.959
rrl1474427r.770a>c0.871
rrl1474429r.772g>c0.871
rrl1474432r.775c>g0.871
rrl1474639r.982g>a0.988
rrl1474794r.1137c>t0.988
rrl1474812r.1155g>a0.988
rrl1474823r.1166c>t1.000
rrl1474831r.1174a>g1.000
rrl1474904r.1247g>a0.985
rrl1474956r.1299c>t1.000
rrl1474961r.1304t>g1.000
rrl1474963r.1306g>a1.000
rrl1474964r.1307t>c1.000
rrl1474970r.1313g>a1.000
rrl1475006r.1349a>t0.976
rrl1475028r.1371g>a0.977
rrl1475061r.1404c>t0.976
rrl1475088r.1431a>t0.978
rrl1475199r.1542g>a0.988
rrl1475206r.1549c>t0.976
rrl1475209r.1552g>c0.988
rrl1475213r.1556c>t0.988
rrl1475249r.1592t>c0.988
rrl1475252r.1595c>t0.988
rrl1475266r.1609t>c0.986
rrl1475267r.1610g>a0.986
rrl1475275r.1618c>t0.986
rrl1475276r.1619t>c0.986
rrl1475291r.1634a>c0.986
rrl1475315r.1658a>t1.000
rrl1475355r.1698c>t0.986
rrl1475369r.1712g>t0.986
rrl1475402r.1745c>t0.984
rrl1475419r.1762c>t0.971
rrl1475483r.1826c>t0.986
rrl1475505r.1848g>a0.984
rrl1475526r.1869c>a0.984
rrl1475573r.1916g>a1.000
rrl1475599r.1942a>g1.000
rrl1475608r.1951t>c0.970
rrl1475642r.1985t>c0.973
rrl1475657r.2000a>g0.974
rrl1475659r.2002g>t0.974
rrl1475758r.2101ac>a1.000
rrl1475763r.2106c>t1.000
rrl1475765r.2108ag>a1.000
rrl1475881r.2224t>c0.989
rrl1475988r.2331a>g0.969
rrl1476031r.2374c>t0.949
rrl1476032r.2375c>a0.949
rrl1476033r.2376t>c0.949
rrl1476034r.2377c>a0.949
rrl1476045r.2388g>t0.949
rrl1476047r.2390g>t0.949
rrl1476048r.2391g>a0.949
rrl1476049r.2392c>t0.949
rrl1476086r.2429g>a0.987
rrl1476089r.2432t>c0.987
rrl1476095r.2438c>g0.986
rrl1476103r.2446c>g0.964
rrl1476105r.2448g>a0.964
rrl1476106r.2449a>t0.964
rrl1476110r.2453g>c0.966
rrl1476115r.2458t>c0.967
rrl1476117r.2460g>c0.967
rrl1476131r.2474c>t0.988
rrl1476214r.2557g>t0.970
rrl1476215r.2558c>t0.985
rrl1476224r.2567a>g0.985
rrl1476281r.2624t>c0.985
rrl1476297r.2640c>t0.984
rrl1476299r.2642c>t0.985
rrl1476583r.2926g>a0.989
rrl1476584r.2927c>t0.989
rrl1476594r.2937c>t0.979
rrl1476597r.2940g>a0.979
rrl1476603r.2946g>a0.979
rrl1476608r.2951c>g0.979
rrl1476628r.2971t>a0.977
rrl1476689r.3032a>t0.947
rrl1476690r.3033c>t0.946
rrl1476693r.3036g>a0.946
rrl1476695r.3038t>a0.946
rrl1476716r.3059a>c0.964
rrl1476717r.3060c>t0.964
rrl1476723r.3066t>a0.981
rrl1476726r.3069a>g0.981
rrl1476755r.3098g>a0.978
rrl1476759r.3102t>c0.978
rrl1476770r.3113t>c0.975
rrl1476771r.3114g>a0.975
fabG11673482p.Ser15Ala1.000
fabG11673487c.48T>C1.000
fabG11673490c.51A>G1.000
fabG11673523c.84G>T1.000
fabG11673535c.96A>G0.986
fabG11673547c.108T>C1.000
fabG11673568c.129C>G1.000
fabG11673574c.135C>G1.000
fabG11673580c.141T>G1.000
fabG11673589c.150A>G1.000
fabG11673591p.Ala51Val1.000
fabG11673595c.156A>C1.000
fabG11673596p.Lys53Glu1.000
fabG11673602c.163C>T1.000
fabG11673607c.168T>C1.000
fabG11673615p.Glu59Val1.000
fabG11673619c.180T>C0.962
fabG11673633p.Ser65Asn0.979
fabG11673637p.Asp66Glu0.980
fabG11673641p.Val68Ile0.981
fabG11673657p.Thr73Lys0.978
fabG11673660p.Ala74Glu0.977
fabG11673664c.225A>C0.977
fabG11673667c.228A>G0.978
fabG11673679c.240T>C0.982
fabG11673685c.246C>T0.966
fabG11673710p.Leu91Ile0.970
fabG11673716p.Ala93Lys0.971
fabG11673733p.Met98Ile0.975
fabG11673748c.309A>G0.966
fabG11673749p.Lys104Arg0.966
fabG11673758p.Lys107Glu0.966
fabG11673890p.Ala151Ser1.000
fabG11673901c.462A>G1.000
fabG11673905p.Ser156Ala0.988
fabG11673916c.477A>C0.989
fabG11673917p.Val160Leu0.989
fabG11673922c.483T>C0.989
fabG11673941p.Ala168Ser0.981
fabG11673955c.516G>C0.991
fabG11673961c.522A>C0.991
fabG11673985c.546C>G0.991
fabG11674006p.Asp189Glu0.978
fabG11674015c.576C>T0.938
fabG11674018c.579G>C0.933
fabG11674021c.582G>C0.933
fabG11674024c.585T>C0.913
fabG11674033c.594T>C0.913
fabG11674037p.Gln200Ala0.911
fabG11674042c.603G>T0.911
fabG11674049p.Gln204Asp0.911
fabG11674054c.615T>C0.922
fabG11674060c.621A>G0.942
fabG11674063c.624G>C0.942
fabG11674079p.Pro214Ala0.967
fabG11674105c.666C>T0.966
fabG11674114c.675T>A0.961
fabG11674123c.684T>C0.955
fabG11674126c.687G>C0.955
fabG11674132c.693T>C0.954
fabG11674136p.Ser233Ala0.952
fabG11674141c.702T>C0.952
fabG11674177c.738C>T0.980
inhA1674453c.252G>C0.818
inhA1674471c.270G>C0.969
inhA1674480c.279T>C0.986
inhA1674486c.285T>C0.987
inhA1674504c.303C>G0.988
inhA1674537c.336C>G1.000
inhA1674542p.Ala114Glu1.000
inhA1674546c.345T>C1.000
inhA1674549c.348G>C0.988
inhA1674555c.354G>A0.989
inhA1674561c.360C>T0.978
inhA1674582c.381T>C0.977
inhA1674585c.384T>C0.963
inhA1674589p.Met130Leu0.966
inhA1674601p.Leu134Thr0.965
inhA1674624c.423A>C0.967
inhA1674660c.459G>C0.962
inhA1674672c.471C>G0.959
inhA1674703c.502T>C0.987
inhA1674708c.507G>A0.987
inhA1674718c.517A>C1.000
inhA1674738c.537C>G0.985
inhA1674746p.Tyr182Phe0.980
inhA1674750c.549T>C0.980
inhA1674753c.552G>C0.980
inhA1674756c.555T>C0.980
inhA1674759c.558G>C0.960
inhA1674774c.573A>G0.957
inhA1674780c.579T>G0.957
inhA1674789c.588G>C0.959
inhA1674801c.600T>C0.966
inhA1674816c.615T>C0.963
inhA1674822c.621C>G0.962
inhA1674828c.627G>A0.962
inhA1674846p.Ile215Met0.957
inhA1674864c.663C>T0.959
inhA1674870c.669T>C0.943
inhA1674879c.678T>C0.947
inhA1674888c.687C>G0.967
inhA1674903c.702T>C0.968
inhA1674904p.Ala235Pro0.968
inhA1674909c.708G>A0.968
inhA1674942c.741T>G0.947
inhA1674954c.753G>C0.932
inhA1674960c.759C>G0.932
inhA1674966c.765T>G0.929
inhA1674967p.Asp256Thr0.929
inhA1674987c.786C>T0.917
rpsA1833512c.-30AC>A0.937
rpsA1833518c.-24C>A0.941
rpsA1833532c.-10A>C0.961
rpsA1833554p.Thr5Ala0.931
rpsA1833568c.27G>C0.939
rpsA1833589c.48A>T0.949
rpsA1833595c.54T>C0.947
rpsA1833661c.120A>G0.975
rpsA1833667c.126C>G0.975
rpsA1833721c.180A>G1.000
rpsA1833724c.183C>G1.000
rpsA1833727c.186G>C1.000
rpsA1833742c.201A>G0.988
rpsA1833745c.204G>C0.988
rpsA1833748c.207C>G0.987
rpsA1833787c.246C>G0.971
rpsA1833790c.249T>C0.969
rpsA1833802c.261A>G0.962
rpsA1833811c.270G>T0.963
rpsA1833838c.297G>C0.962
rpsA1833841c.300C>G0.962
rpsA1833847c.306C>G0.964
rpsA1833856c.315A>G0.966
rpsA1833874c.333T>C0.966
rpsA1833928c.387G>C0.965
rpsA1833940c.399C>G0.974
rpsA1833971c.430C>T0.981
rpsA1833979c.438T>C0.981
rpsA1834000c.459G>C0.981
rpsA1834021c.480C>T0.980
rpsA1834030c.489C>G0.990
rpsA1834099c.558C>G0.982
rpsA1834102c.561T>C0.972
rpsA1834105c.564C>G0.972
rpsA1834108c.567C>G0.973
rpsA1834123c.582C>G0.983
rpsA1834150c.609G>C0.969
rpsA1834153c.612T>C0.968
rpsA1834154p.Asn205Gln0.968
rpsA1834157c.616T>C0.968
rpsA1834162c.621A>G0.968
rpsA1834165c.624A>G0.969
rpsA1834169p.Thr210Ala0.971
rpsA1834177c.636A>C1.000
rpsA1834189c.648G>C0.978
rpsA1834195c.654G>C0.979
rpsA1834210c.669C>T0.969
rpsA1834222c.681T>C0.956
rpsA1834231c.690T>C0.976
rpsA1834234c.693G>C0.976
rpsA1834249c.708T>C0.976
rpsA1834261c.720A>G0.985
rpsA1834262c.721T>A0.985
rpsA1834303c.762T>C0.989
rpsA1834306c.765T>C0.989
rpsA1834333c.792C>T0.989
rpsA1834348c.807T>C0.989
rpsA1834366c.825A>G1.000
rpsA1834396c.855G>C1.000
rpsA1834411c.870T>C1.000
rpsA1834417c.876G>C1.000
rpsA1834423c.882G>C1.000
rpsA1834435c.894G>C0.990
rpsA1834451c.910T>C0.990
rpsA1834465c.924T>C0.991
rpsA1834468c.927A>G0.991
rpsA1834489c.948T>C0.982
rpsA1834510c.969C>T0.982
rpsA1834513c.972C>G0.982
rpsA1834528c.987T>C0.974
rpsA1834540c.999G>C0.974
rpsA1834546c.1005T>C0.973
rpsA1834609c.1068T>C0.981
rpsA1834633c.1092A>G0.990
rpsA1834639c.1098T>C0.989
rpsA1834654p.Glu371Asp0.989
rpsA1834684c.1143C>T0.988
rpsA1834690c.1149T>C0.988
rpsA1834732c.1191T>C0.988
rpsA1834733p.Ala398Ser0.988
rpsA1834738c.1197A>G0.988
rpsA1834753c.1212T>C0.976
rpsA1834765p.Glu408Asp0.965
rpsA1834775p.Ala412Thr0.964
rpsA1834780c.1239A>G0.963
rpsA1834786c.1245A>G0.963
rpsA1834789c.1248T>C0.962
rpsA1834792c.1251G>C0.962
rpsA1834849c.1308C>G0.939
rpsA1834852c.1311C>G0.938
tlyA1917940p.Val1Met0.932
tlyA1917943p.Ala2Ser0.891
tlyA1917951c.12T>C0.935
tlyA1917972c.33A>G1.000
tlyA1917975c.36C>G0.941
tlyA1917981c.42G>C0.956
tlyA1917990c.51G>C0.956
tlyA1917993c.54A>G0.957
tlyA1917996c.57A>G0.959
tlyA1918002c.63A>G0.963
tlyA1918036p.Arg33Ser0.971
tlyA1918048p.Leu37Met0.983
tlyA1918057p.Val40Arg0.963
tlyA1918065c.126G>C0.926
tlyA1918067p.Ala43Gly0.963
tlyA1918077c.138G>C0.958
tlyA1918078p.Ser47Ala0.958
tlyA1918082p.Asp48Val0.958
tlyA1918087p.Thr50Ala0.958
tlyA1918092c.153G>C1.000
tlyA1918103p.Val55Ala0.947
tlyA1918111p.Ser58Gly0.941
tlyA1918121p.Ala61Gly0.941
tlyA1918128c.189A>C0.941
tlyA1918137c.198A>C0.938
katG2155080c.1032C>G0.688
katG2155092c.1020C>T0.647
katG2155113c.999G>C0.667
katG2155119c.993A>G0.667
katG2155131c.981T>C0.667
katG2155145p.Asn323Pro0.667
katG2155152c.960T>G0.706
katG2155155c.957G>C0.706
katG2155179c.933G>A0.800
katG2155185c.927A>G0.786
katG2155190p.Thr308Ser0.786
katG2155191c.921T>A0.846
katG2155200c.912A>G0.917
katG2155637p.Leu159Ile0.900
katG2155641p.Lys157Asn0.917
katG2155661p.Val151Ile0.955
katG2155668c.444C>A0.966
katG2155677c.435G>T0.938
katG2155680c.432C>G0.938
katG2155691c.421A>G0.886
katG2155695c.417G>C0.886
katG2155704c.408G>C0.900
katG2155716c.396A>C0.927
katG2155719c.393C>T0.927
katG2155722c.390C>G0.927
katG2155728c.384C>G0.927
katG2155742p.Gly124Gln0.884
katG2155743c.369C>G0.884
katG2155782c.330G>C0.917
katG2155785c.327A>G0.915
katG2155796p.Ala106Ser0.844
katG2155806c.306A>G0.871
kasA2518121p.Gln3Lys1.000
kasA2518132c.18C>T1.000
kasA2518138c.24T>C1.000
kasA2518146p.Phe11Tyr1.000
kasA2518162c.48G>A0.985
kasA2518174c.60A>G0.986
kasA2518190p.Ser26Ala0.987
kasA2518199p.Ile29Val0.987
kasA2518220c.106C>T0.987
kasA2518234c.120G>A0.985
kasA2518248p.Ala45Val0.980
kasA2518261p.Glu49Asp0.950
kasA2518263p.Phe50Tyr0.947
kasA2518265p.Val51Ile0.947
kasA2518429c.315A>C1.000
kasA2518439p.Ala109Ser1.000
kasA2518444c.330T>C1.000
kasA2518447c.333T>G1.000
kasA2518459c.345T>C1.000
kasA2518462c.348A>C1.000
kasA2518468c.354A>C1.000
kasA2518474c.360G>A1.000
kasA2518480c.366T>C1.000
kasA2518483c.369C>G1.000
kasA2518504c.390T>C1.000
kasA2518506p.Ala131Glu1.000
kasA2518519c.405G>C1.000
kasA2518528c.414C>G1.000
kasA2518540c.426T>C1.000
kasA2518561c.447T>C0.987
kasA2518567c.453G>C0.982
kasA2518570c.456G>C0.982
kasA2518574p.Ile154Val0.963
kasA2518579c.465T>C0.929
kasA2518588c.474T>C0.929
kasA2518591c.477G>C0.929
kasA2518609p.Met165Ile0.918
kasA2518624c.510C>G0.913
kasA2518639c.525G>C0.911
kasA2518657c.543G>C0.917
kasA2518672c.558G>C0.911
kasA2518678c.564C>T0.909
kasA2518684c.570C>G0.909
kasA2518693c.579C>G0.909
kasA2518696c.582C>G0.889
kasA2518702c.588C>T0.911
kasA2518705c.591T>C0.911
kasA2518711c.597A>G0.918
kasA2518714c.600A>C0.923
kasA2518732c.618C>G0.987
kasA2518744c.630C>T0.988
kasA2518747c.633C>G0.988
kasA2518768c.654C>T0.989
kasA2518777c.663C>T0.989
kasA2518783c.669T>C0.989
kasA2518789c.675G>C0.989
kasA2518792c.678C>A0.989
kasA2518795c.681C>G0.989
kasA2518825c.711T>C0.989
kasA2518864c.750G>C0.986
kasA2518879c.765A>G0.984
kasA2518885c.771T>C0.982
kasA2518898c.784T>C0.980
kasA2518906c.792A>G0.978
kasA2518910p.Leu266Met0.977
kasA2518921c.807T>C0.974
kasA2518936c.822C>G0.960
kasA2518939c.825T>C0.917
kasA2518942c.828T>C0.905
kasA2518951c.837G>C0.882
kasA2518954c.840C>G0.824
kasA2518963c.849T>C0.875
kasA2518969c.855T>G0.857
kasA2518975c.861C>G0.833
kasA2518979c.865A>C0.818
kasA2519050c.936C>G1.000
kasA2519053c.939G>C1.000
kasA2519056c.942G>C1.000
kasA2519062c.948T>G0.972
kasA2519068c.954C>T0.973
kasA2519072p.Ala320Thr0.950
kasA2519095c.981C>A0.948
kasA2519107c.993T>C0.952
kasA2519108p.Asp332Gln0.952
kasA2519116c.1002C>G0.958
kasA2519122c.1008G>C0.959
kasA2519137c.1023T>G0.963
kasA2519158c.1044C>T0.964
kasA2519167c.1053T>G0.946
kasA2519173c.1059C>G0.959
kasA2519196p.Thr361Ser0.947
kasA2519215c.1101C>T0.923
kasA2519218c.1104G>A0.885
kasA2519221c.1107G>C0.885
kasA2519227c.1113G>C0.909
kasA2519230c.1116C>T0.909
kasA2519236c.1122G>A0.909
kasA2519239c.1125A>C0.909
kasA2519245c.1131T>C0.909
ahpC2726198c.6A>T0.848
ahpC2726204c.12A>G0.861
ahpC2726210c.18T>C0.865
ahpC2726216c.24T>C0.895
ahpC2726219c.27A>G0.902
ahpC2726232p.Gln14Glu0.932
ahpC2726243c.51T>G0.933
ahpC2726244c.52C>T0.933
ahpC2726251p.Gly20Ala0.936
ahpC2726255c.63T>C0.936
ahpC2726258c.66C>T0.943
ahpC2726303c.111T>C0.987
ahpC2726311p.Ser40Asn0.978
ahpC2726315p.Asp41Glu0.978
ahpC2726318p.Glu42Asp0.978
ahpC2726322p.Pro44Ala0.978
ahpC2726330c.138G>A0.978
ahpC2726336c.144G>C0.978
ahpC2726348c.156T>C1.000
ahpC2726357c.165A>G1.000
ahpC2726366c.174G>C1.000
ahpC2726378c.186T>G1.000
ahpC2726387c.195C>T1.000
ahpC2726390c.198G>C1.000
ahpC2726393c.201G>C1.000
ahpC2726397p.Ser69Gly0.950
ahpC2726408c.216T>C0.929
ahpC2726510c.318A>G0.700
ahpC2726528c.336C>G0.909
ahpC2726540c.348C>G0.909
ahpC2726543c.351A>G0.909
ahpC2726546c.354C>G0.938
ahpC2726551p.Gln120Leu0.938
ahpC2726556p.Ala122Thr0.938
ahpC2726561c.369T>C0.938
ahpC2726564c.372C>G0.941
ahpC2726579c.387T>C0.972
ahpC2726591c.399C>G0.974
ahpC2726593p.Val134Ala0.974
ahpC2726600c.408T>C0.962
ahpC2726601p.Ile137Leu0.963
ahpC2726638p.Ala149Val0.982
ahpC2726645c.453C>G0.973
ahpC2726651c.459G>C0.973
ahpC2726657c.465A>C0.973
ahpC2726669p.Asp159Glu0.976
ahpC2726672c.480G>A0.976
ahpC2726675c.483A>G0.976
ahpC2726681c.489A>C0.975
ahpC2726687c.495C>G0.963
ahpC2726693c.501C>G0.963
ahpC2726696c.504C>G0.961
ahpC2726717c.525A>G0.955
ahpC2726747c.555A>C0.938
folC2746375c.1224C>G0.824
folC2746392p.Val403Ile0.875
folC2746393c.1206G>C0.875
folC2746401p.Ser400Ala0.875
folC2746402c.1197A>G0.875
folC2746416p.Glu395Gln0.944
folC2746420c.1179T>C0.952
folC2746426c.1173C>G0.958
folC2746438c.1161C>G0.966
folC2746451p.Gly383Ala0.974
folC2746478p.Phe374Tyr0.925
folC2746480c.1119T>G0.921
folC2746492c.1107C>T0.857
folC2746497p.His368Gly0.857
folC2746507c.1092T>C0.857
folC2746510c.1089T>C0.857
folC2746516c.1083A>C0.857
folC2746521p.Ser360Ala0.828
folC2746525c.1074C>A0.833
folC2746531c.1068C>G0.848
folC2746564c.1035T>C0.844
folC2746576c.1023G>C0.815
folC2746584c.1015A>G0.783
folC2746594c.1005A>G0.643
folC2746599p.Thr334Val0.615
folC2746606c.993G>C0.615
folC2746609c.990A>G0.615
folC2746612c.987G>A0.615
folC2746615c.984G>C0.727
folC2746618c.981C>G0.727
folC2746621c.978G>A0.727
folC2746624c.975G>C0.727
folC2746627p.Asp324Glu0.727
folC2746631p.Gly323Val0.727
folC2746651c.948A>G0.727
folC2746657c.942A>G0.727
folC2746663c.936A>G0.727
folC2747021p.Val193Ala0.800
folC2747023c.576G>C0.800
folC2747026c.573G>C0.833
folC2747032c.567T>G0.944
folC2747059c.540A>G0.950
folC2747062c.537T>C0.950
folC2747065c.534G>A0.950
folC2747071c.528G>C0.950
folC2747086c.513T>G0.950
folC2747089c.510C>G0.950
folC2747101c.498C>G0.950
folC2747104c.495G>A0.950
folC2747107c.492C>G1.000
folC2747110c.489A>G1.000
folC2747113c.486G>C1.000
folC2747116c.483C>G1.000
folC2747134c.465G>C1.000
folC2747224c.375C>G1.000
folC2747239c.360A>G1.000
folC2747248c.351C>G1.000
folC2747264p.Gly112Ala0.980
folC2747275c.324A>G0.984
folC2747289p.Pro104Ala0.955
folC2747290c.309T>C0.955
folC2747293c.306C>T0.955
folC2747302c.297T>G0.962
folC2747314c.285T>G0.963
folC2747317c.282G>C0.964
folC2747343p.Val86Ile0.969
folC2747355p.Val82Ile0.968
folC2747394p.Ile69Val0.956
folC2747395c.204A>G0.955
folC2747407c.192A>G0.933
folC2747415p.Arg62Cys0.920
folC2747419c.180G>C0.920
folC2747422c.177C>T0.920
folC2747425c.174G>A0.957
folC2747430c.169G>A0.958
folC2747442c.157A>G1.000
folC2747467p.Asp44Glu1.000
ribD2986959p.Leu41Val0.727
ribD2986978p.Ser47Thr0.722
ribD2986983p.Leu49Val0.722
ribD2986997c.159T>C0.812
ribD2987001p.Val55Ser0.800
ribD2987005p.Asp56Gly0.800
ribD2987011p.Thr58Ser0.789
ribD2987026p.Ala63Gly0.889
ribD2987033c.195C>G0.891
ribD2987042c.204A>G0.918
ribD2987046p.Val70Ile0.919
ribD2987058c.220T>C0.921
ribD2987066c.228A>G0.921
ribD2987069c.231T>C0.921
ribD2987092p.Val85Ala0.921
ribD2987105c.267C>G0.909
ribD2987108c.270T>C0.907
ribD2987123c.285C>G0.893
ribD2987125p.Val96Ala0.893
ribD2987128p.Arg97Gln0.893
ribD2987130p.Met98Leu0.893
ribD2987133p.Gly99Ser0.893
ribD2987137p.Val100Ala0.893
ribD2987140p.Val101Ala0.893
ribD2987165c.327A>C0.909
ribD2987168c.330C>G0.905
ribD2987177c.339A>G0.833
thyX3067223c.723C>G1.000
thyX3067232c.714G>C1.000
thyX3067246p.Thr234Ala1.000
thyX3067249p.Thr233Ser1.000
thyX3067252p.Val232Ile1.000
thyX3067274c.672G>C1.000
thyX3067277c.669G>C1.000
thyX3067281p.Val222Ala1.000
thyX3067284p.Ala221Gly1.000
thyX3067286c.660G>C1.000
thyX3067289c.657G>C1.000
thyX3067292c.654C>T1.000
thyX3067295c.651G>A1.000
thyX3067316c.630T>C0.969
thyX3067325c.621T>C0.969
thyX3067349c.597C>G0.947
thyX3067355c.591T>G0.947
thyX3067367c.579C>G0.943
thyX3067373c.573G>C0.948
thyX3067388c.558G>C0.946
thyX3067391c.555C>G0.945
thyX3067394c.552C>G0.946
thyX3067439c.507T>C0.948
thyX3067445c.501G>C0.945
thyX3067457c.489G>C0.976
thyX3067462c.484G>A0.977
thyX3067465p.Ile161Val0.977
thyX3067475c.471T>C0.976
thyX3067490c.456G>C1.000
thyX3067493c.453T>C1.000
thyX3067515p.Ser144Thr1.000
thyX3067531p.Ala139Ser1.000
thyX3067545p.Glu134Ala1.000
thyX3067549p.Thr133Ala1.000
thyX3067556p.His130Gln1.000
thyX3067559c.387G>C1.000
thyX3067565p.Asp127Glu1.000
thyX3067570p.Ala126Pro1.000
thyX3067577c.369C>T1.000
thyX3067583c.363G>C1.000
thyX3067602p.Arg115His1.000
thyX3067611p.Lys112Thr1.000
thyX3067619c.327T>G0.987
thyX3067631c.315G>C1.000
thyX3067634c.312G>C1.000
thyX3067652c.294A>G1.000
thyX3067661c.285G>C0.976
thyX3067685c.261T>G0.977
thyX3067693p.Ile85Leu0.975
thyX3067694c.252C>G0.975
thyX3067718c.228G>C0.974
thyX3067721c.225A>G0.974
thyX3067727c.219T>G0.971
thyX3067738p.Phe70Leu0.921
thyX3067739c.207A>G0.921
thyX3067754c.192G>A0.975
thyX3067762p.Arg62Lys0.969
thyX3067765p.Leu61Ile0.970
thyX3067772c.174G>C0.987
thyX3067781c.165G>C0.987
thyX3067793c.153A>G0.986
thyX3067799c.147C>T0.986
thyX3067802c.144G>C0.986
thyX3067814c.132A>G1.000
thyX3067850c.96T>G1.000
thyX3067869p.Thr26Ser1.000
thyX3067874c.72G>C1.000
thyX3067883c.63G>C1.000
thyX3067886c.60T>G1.000
thyX3067889c.57G>C1.000
thyX3067898p.Asp16Glu1.000
thyX3067935p.Thr4Ile0.970
thyA3073812c.660G>C0.889
thyA3073815c.657C>T0.892
thyA3073824c.648T>C0.923
thyA3073827c.645T>C0.923
thyA3073839c.633A>G0.939
thyA3073860c.612G>C0.941
thyA3073863c.609A>G0.941
thyA3073866c.606G>C0.941
thyA3073874p.Ile200Val0.941
thyA3073892c.580A>G0.923
thyA3073898p.Ala192Ser0.941
thyA3073917c.555G>C0.976
thyA3073920c.552G>C0.971
thyA3073925c.547A>G0.969
thyA3073929c.543A>G0.968
thyA3073947c.525C>T0.923
thyA3073953c.519A>G0.900
thyA3073956c.516C>G0.882
thyA3073959c.513A>G0.875
thyA3073977c.495T>C0.833
thyA3074004c.468A>G0.900
thyA3074010c.462G>C0.909
thyA3074028c.444C>G0.943
thyA3074031c.441A>G0.950
thyA3074037c.435G>C0.974
thyA3074053p.Arg140Gln0.977
thyA3074057p.Glu139Pro0.977
thyA3074061c.411T>C0.977
thyA3074079c.393C>G0.986
thyA3074097c.375G>C0.987
thyA3074102p.Asp124Asn0.987
thyA3074106c.366A>G0.988
thyA3074127c.345C>G0.989
thyA3074130c.342C>G0.989
thyA3074154c.318A>G0.981
thyA3074157c.315G>C0.981
thyA3074160c.312T>C0.981
thyA3074165p.Ala103Thr0.981
thyA3074172c.300C>G0.982
thyA3074175c.297T>C0.983
thyA3074181c.291T>C0.986
thyA3074187c.285A>G0.986
thyA3074205p.Glu89Asp0.987
thyA3074214c.258A>G0.987
thyA3074244c.228T>C1.000
thyA3074254p.His73Arg1.000
thyA3074262c.210A>G1.000
thyA3074267p.Ile69Val1.000
thyA3074268c.204A>G1.000
thyA3074285c.187A>G1.000
thyA3074286c.186A>G1.000
thyA3074391c.81G>T0.923
thyA3074397c.75T>C0.929
thyA3074412c.60G>A0.889
thyA3074423p.Pro17Ala0.889
thyA3074427c.45A>T0.842
thyA3074432p.Thr14Glu0.842
thyA3074433p.Glu13Asp0.842
thyA3074444p.Phe10Leu0.800
thyA3074448c.24C>G0.800
thyA3074463c.9T>G0.800
thyA3074471p.Val1Pro0.762
ald3087272c.453A>C0.750
ald3087278p.Gln153His0.750
ald3087281c.462G>C0.750
ald3087284c.465C>G0.750
ald3087290c.471T>C0.750
ald3087305c.486G>C0.800
ald3087311c.492C>G0.800
ald3087318p.Glu167Lys0.800
ald3087344c.525C>G0.857
ald3087347c.528C>G0.857
ald3087350c.531C>T0.857
ald3087356c.537C>T0.857
ald3087368c.549A>G0.857
ald3087375p.Ile186Val0.857
ald3087380c.561C>G0.857
ald3087672p.His285Asp1.000
ald3087680c.861G>C1.000
ald3087704c.885T>C1.000
ald3087716c.897G>C1.000
ald3087726p.Ala303Ser1.000
ald3087729p.Ser304Ala1.000
ald3087737c.918G>C1.000
ald3087749c.930C>G1.000
ald3087750p.Tyr311Val1.000
ald3087761c.942C>G1.000
ald3087770c.951G>C1.000
ald3087787p.Glu323Ala0.923
ald3087791c.972T>C0.923
ald3087797p.Asp326Glu0.917
ald3087799p.His327Arg0.917
fbiA3640291c.-252T>C0.956
fbiA3640307c.-236C>A0.957
fbiA3640347c.-196A>G0.989
fbiA3640349c.-194A>G0.989
fbiA3640350c.-193C>T0.989
fbiA3640365c.-178C>G1.000
fbiA3640830c.288C>G1.000
fbiA3640839c.297C>G1.000
fbiA3640850p.Glu103Gly1.000
fbiA3640857c.315G>C1.000
fbiA3640866c.324T>C0.933
fbiA3640871p.Ala110Gly0.933
fbiA3640878c.336T>C0.933
fbiA3640899c.357G>C0.933
fbiA3640900p.Gln120Asn0.933
fbiA3640914c.372C>G0.933
fbiA3640930p.Glu130Thr0.933
fbiA3640935c.393C>G0.933
fbiA3640938c.396A>G0.933
fbiA3640944c.402T>C0.933
alr3840959c.462C>G0.867
alr3840968c.453C>G0.905
alr3840980c.441C>G0.920
alr3840989c.432C>G0.920
alr3840994p.His143Asp0.920
alr3840997c.424C>G0.920
alr3841001c.420T>C0.889
alr3841010c.411T>C0.893
alr3841018p.Leu135Glu0.893
alr3841022c.399G>C0.912
alr3841028c.393C>G0.914
alr3841033p.Val130Ile0.914
alr3841039p.Val128Ile0.917
alr3841059p.Gly121Ala0.974
alr3841069p.Ile118Phe0.974
alr3841079c.342A>G0.934
alr3841100c.321T>C0.982
alr3841105p.Thr106Arg0.981
alr3841108p.Ile105Val0.981
alr3841112c.309A>G0.981
alr3841115c.306A>G0.981
alr3841127c.294T>C0.981
panD4044057c.225G>T0.971
panD4044072c.210G>C0.977
panD4044075c.207A>G0.977
panD4044081c.201A>G0.980
panD4044084c.198A>G0.980
panD4044105c.177C>G0.982
panD4044117c.165C>G0.982
panD4044120c.162T>G0.982
panD4044123c.159A>G0.982
panD4044126c.156A>G0.982
panD4044138c.144A>G0.982
panD4044150c.132T>C0.982
panD4044165c.117C>G0.981
panD4044174c.108G>C0.979
panD4044177c.105G>C0.978
panD4044188c.94A>G1.000
panD4044189c.93G>A1.000
panD4044195c.87A>G1.000
panD4044213c.69G>C1.000
embC4240078c.216A>G0.812
embC4240081c.219G>C0.812
embC4240087c.225T>C0.833
embC4240090c.228C>T0.850
embC4240105c.243C>T0.880
embC4240123c.261C>G0.846
embC4240126c.264C>T0.846
embC4240141c.279A>G0.846
embC4240145p.Ala95Thr0.917
embC4240154p.Gln98Gly0.917
embC4240160p.Thr100Ala0.917
embC4240178c.316T>C0.917
embC4240183c.321A>G0.880
embC4240204c.342T>C0.846
embC4240216c.354T>C0.636
embC4240630c.768C>A0.885
embC4240632p.Met257Thr0.923
embC4240642c.780G>C0.941
embC4240645c.783G>C0.946
embC4240651c.789G>A0.956
embC4240669c.807G>C0.951
embC4240671p.Thr270Ile0.967
embC4240677p.Gly272Ala0.967
embC4240685p.Thr275Ala0.970
embC4240693c.831T>G0.976
embC4240699c.837C>G0.977
embC4240726c.864G>C0.981
embC4240780c.918T>C0.991
embC4240783c.921G>C0.991
embC4240789c.927T>C0.991
embC4240819c.957A>G0.990
embC4240828c.966G>A0.990
embC4240831c.969T>G0.989
embC4240867c.1005T>C0.953
embC4240870c.1008T>C0.949
embC4240873c.1011C>G0.947
embC4240879c.1017G>C0.943
embC4240880p.Ala340Thr0.943
embC4240885c.1023T>C0.943
embC4240897c.1035C>G0.938
embC4240898c.1036C>T0.938
embC4240903c.1041C>G0.938
embC4240911p.Ala350Val0.938
embC4240921c.1059C>G0.929
embC4240924c.1062C>G0.923
embC4240936c.1074A>G0.875
embC4240945c.1083T>G0.864
embC4240954p.Ile364Met0.812
embC4240960c.1098G>T0.769
embC4240996c.1134G>C0.952
embC4241002c.1140G>C0.958
embC4241013p.Met384Thr0.968
embC4241017c.1155T>C0.968
embC4241023c.1161T>G0.969
embC4241032c.1170G>C0.972
embC4241038c.1176G>C0.949
embC4241047c.1185C>G0.956
embC4241050c.1188T>G0.957
embC4241053c.1191G>C0.957
embC4241089c.1227C>G0.987
embC4241095c.1233C>T0.988
embC4241107c.1245G>C0.988
embC4241140c.1278A>G1.000
embC4241146c.1284C>G1.000
embC4241158c.1296T>C1.000
embC4241161c.1299C>G0.985
embC4241162c.1300T>C0.985
embC4241170c.1308G>C0.973
embC4241173c.1311C>T0.973
embC4241203c.1341T>C0.962
embC4241206c.1344G>C0.962
embC4241218c.1356G>C0.957
embC4241230c.1368A>G0.943
embC4241233c.1371G>C0.943
embC4241344c.1482G>C0.900
embC4241351p.Ile497Val0.974
embC4241361p.Asn500Thr0.977
embC4241363p.Leu501Met0.977
embC4241374c.1512T>C0.978
embC4241380c.1518A>C0.979
embC4241383c.1521G>C0.979
embC4241392c.1530G>C0.979
embC4241394p.Lys511Ser0.979
embC4241449c.1587C>G0.990
embC4241453p.Ile531Val0.989
embC4241479c.1617C>G1.000
embC4241480c.1618T>C1.000
embC4241488c.1626G>C1.000
embC4241496p.Ala545Gly1.000
embC4241500c.1638A>C1.000
embC4241501p.Ser547Thr1.000
embC4241506c.1644G>C1.000
embC4241518c.1656A>G1.000
embC4241521c.1659T>C1.000
embC4241530c.1668C>A1.000
embC4241536c.1674A>G1.000
embC4241539c.1677T>C1.000
embC4241545c.1683T>C1.000
embC4241548c.1686T>C1.000
embC4241551c.1689A>G1.000
embC4241567p.Ile569Val1.000
embC4241572c.1710C>G1.000
embC4241578c.1716G>C0.929
embC4241584c.1722T>C1.000
embC4241587c.1725C>G1.000
embC4241591p.Leu577Val1.000
embC4241611c.1749G>C1.000
embC4241614c.1752A>C1.000
embC4241626c.1764T>C1.000
embC4241635c.1773G>C1.000
embC4241644c.1782G>C1.000
embC4241648c.1786T>C1.000
embC4241657p.Ser599Pro1.000
embC4241665c.1803G>C1.000
embC4241671c.1809T>C1.000
embC4242689p.Val943Ile1.000
embC4242710p.Gln950Glu1.000
embC4242715c.2853T>C1.000
embC4242742c.2880C>G1.000
embC4242748c.2886A>G1.000
embC4242754c.2892G>C1.000
embC4242764p.Val968Leu1.000
embC4242772c.2910G>C1.000
embC4242779p.Asn973Asp1.000
embC4242791p.Ala977Ser1.000
embC4242796c.2934G>C0.986
embC4242799c.2937T>C0.986
embC4242820c.2958G>C0.986
embC4242823c.2961G>C0.986
embC4242832c.2970A>C0.985
embC4242838c.2976C>G0.981
embC4242841c.2979C>T0.981
embC4242844c.2982A>G0.981
embC4242847c.2985C>A0.983
embC4242859c.2997C>T0.984
embC4242862c.3000A>G0.983
embC4242863p.Tyr1001Asn0.983
embC4242883c.3021C>G0.981
embC4242892c.3030G>C0.962
embC4242901c.3039G>C0.961
embC4242919c.3057A>G0.955
embC4242928c.3066A>G0.949
embC4242931c.3069G>C0.949
embC4242940c.3078T>C0.889
embC4242941p.His1027Asn0.880
embC4242946c.3084T>C0.917
embC4242952c.3090T>C0.909
embC4242959c.3097C>T0.905
embC4242965p.Ile1035Val0.905
embA4244447c.1215G>C0.812
embA4244462c.1230A>G0.926
embA4244478p.Thr416Leu0.933
embA4244483c.1251T>G0.903
embA4244485p.Thr418Ser0.939
embA4244498c.1266A>G0.958
embA4244507c.1275G>T0.940
embA4244508c.1276T>C0.940
embA4244516c.1284G>C0.944
embA4244517p.Leu429Val0.944
embA4244523p.Pro431Ala0.951
embA4244534c.1302T>C0.957
embA4244537c.1305T>G0.943
embA4244543c.1311C>G0.945
embA4244547p.Ile439Val0.948
embA4244557p.Arg442Thr0.953
embA4244582c.1350T>C0.951
embA4244611p.Ala460Gly0.951
embA4244616p.Ala462Ser0.949
embA4244619c.1387T>C0.947
embA4244625p.Leu465Val0.947
embA4244631p.Thr467Leu0.947
embA4244645c.1413T>C0.971
embA4244648c.1416G>C0.968
embA4244649p.Asp473Ser0.967
embA4245041c.1809C>G0.968
embA4245044c.1812G>C0.974
embA4245053c.1821G>C0.980
embA4245060c.1828T>C0.982
embA4245083c.1851A>C1.000
embA4245086c.1854C>G1.000
embA4245089c.1857G>C1.000
embA4245098c.1866C>T1.000
embA4245101c.1869G>C1.000
embA4245137c.1905T>C1.000
embA4245146c.1914G>A1.000
embA4245149c.1917C>G1.000
embA4245153p.Ile641Val1.000
embA4245182c.1950T>C1.000
embA4245189c.1957C>T1.000
embA4245198p.Leu656Ile0.990
embA4245207c.1975T>C0.979
embA4245215c.1983A>C0.955
embA4245222p.Tyr664Gln0.965
embA4245248c.2016G>C0.931
embA4245257c.2025A>G0.928
embA4245263c.2031A>G0.922
embA4245282p.Ile684Val0.844
embA4245285c.2053T>C0.864
embA4245290c.2058C>G0.850
embA4245293c.2061T>G0.872
embA4245296c.2064G>C0.872
embA4245299c.2067A>G0.872
embA4245659c.2427C>G0.902
embA4245665c.2433C>A0.907
embA4245674c.2442A>C0.958
embA4245677c.2445G>C0.960
embA4245693p.Ile821Val0.968
embA4245701c.2469G>C0.970
embA4245704c.2472G>C0.971
embA4245725c.2493A>G0.974
embA4245726c.2494T>C0.974
embA4245737c.2505A>C0.965
embA4245740c.2508T>C0.967
embA4245764c.2532G>C0.967
embA4245772p.Asn847Thr0.962
embA4245785c.2553G>C0.973
embA4245807c.2575T>C0.900
embA4245812c.2580G>C0.895
embA4245813p.Pro861Ala0.895
embA4245820p.Ser863Thr0.895
embA4245824c.2592G>C0.895
embA4245826p.Asp865Ala0.895
embA4245833c.2601G>C0.895
embA4245842c.2610G>C0.895
embA4245845c.2613T>C0.895
embA4245851c.2619G>C0.895
embA4245860c.2628C>G0.895
embA4246164c.2932T>C0.958
embA4246184c.2952A>C0.920
embA4246196c.2964C>G0.920
embA4246205c.2973A>G0.920
embA4246211c.2979T>C0.920
embA4246217c.2985G>A0.920
embA4246220c.2988T>C0.920
embA4246223c.2991C>T0.920
embA4246227p.Ile999Val0.920
embA4246235c.3003G>A0.920
embA4246242p.Gln1004Gly0.920
embA4246250c.3018G>C0.963
embA4246256c.3024G>T0.968
embA4246264p.His1011Arg0.969
embA4246274c.3042G>A0.973
embA4246292c.3060A>G0.971
embA4246305p.Ser1025Glu0.944
embA4246308p.Thr1026Ala0.941
embA4246316c.3084T>G0.941
embA4246319c.3087G>C0.889
embA4246329p.Thr1033Leu0.941
embA4246349c.3117C>G0.941
embA4246359p.Ala1043Ser0.941
embA4246367c.3135C>T0.941
embA4246373c.3141T>C0.941
embA4246376c.3144G>C0.941
embA4246379c.3147C>T0.941
embA4246400c.3168G>C0.929
embB4247365c.852A>C0.833
embB4247371c.858C>G0.867
embB4247375p.Leu288Val0.871
embB4247386c.873T>C0.875
embB4247389c.876C>G0.875
embB4247395c.882C>G0.898
embB4247401c.888T>C0.900
embB4247407c.894G>C0.900
embB4247425c.912G>C0.932
embB4247434c.921C>G0.933
embB4247437c.924A>G0.933
embB4247440c.927C>G0.933
embB4247446c.933C>T0.934
embB4247464c.951C>G0.964
embB4247470c.957T>C0.989
embB4247491c.978G>C0.990
embB4247497c.984T>C0.989
embB4247512c.999T>C0.988
embB4247539c.1026T>C0.986
embB4247554c.1041T>C0.985
embB4247566c.1053C>A0.983
embB4247572c.1059A>G0.982
embB4247579p.Ala356Phe0.976
embB4247587c.1074G>A0.975
embB4247603c.1090C>T0.974
embB4247611c.1098G>T0.966
embB4247614c.1101T>C0.962
embB4247629c.1116C>G0.938
embB4247632c.1119C>G0.938
embB4247638c.1125G>C0.923
embB4247683c.1170C>G1.000
embB4247692c.1179C>G1.000
embB4247716c.1203C>T1.000
embB4247722c.1209G>C1.000
embB4247725c.1212G>C1.000
embB4247729p.Gly406Pro1.000
embB4247746c.1233C>T1.000
embB4247761c.1248T>C1.000
embB4247773c.1260G>A1.000
embB4247776c.1263G>T1.000
embB4247797c.1284C>G1.000
embB4247800c.1287A>T1.000
embB4247803c.1290G>C1.000
embB4247815c.1302C>G1.000
embB4247819p.Val436Ile0.988
embB4247830c.1317A>C1.000
embB4247836c.1323A>G1.000
embB4247839c.1326G>C1.000
embB4247866c.1353G>C1.000
embB4247875c.1362G>C1.000
embB4247876c.1363C>T1.000
embB4247881c.1368G>C1.000
embB4247887c.1374C>T1.000
embB4247899p.Met462Ile1.000
embB4247905c.1392G>C1.000
embB4247909c.1396T>C1.000
embB4247914c.1401G>C1.000
embB4247932c.1419C>G0.993
embB4247940p.Leu476Trp0.992
embB4247945c.1432T>C0.992
embB4247951p.Ser480Ala0.992
embB4247956c.1443G>C0.992
embB4247974c.1461C>G0.992
embB4248007c.1494C>G0.990
embB4248011p.Ser500Arg0.980
embB4248014p.Thr501Ala0.980
embB4248035p.Val508Ile0.976
embB4248040c.1527C>G0.976
embB4248041p.Ala510Thr0.975
embB4248044p.Lys511Ala0.975
embB4248070c.1557T>C0.982
embB4248085c.1572T>C0.991
embB4248097c.1584C>G0.991
embB4248130c.1617G>C0.981
embB4248133c.1620C>G0.990
embB4248139c.1626C>G0.990
embB4248142c.1629T>C0.990
embB4248143c.1630T>C0.990
embB4248157c.1644A>G0.991
embB4248172c.1659G>C0.991
embB4248199c.1686A>G0.990
embB4248200p.Ile563Val0.989
embB4248205c.1692C>G0.979
embB4248206p.Ser565Gly0.979
embB4248220c.1707A>C0.982
embB4248304c.1791G>C0.979
embB4248319c.1806A>G0.989
embB4248343c.1830G>C0.988
embB4248350c.1837T>C0.986
embB4248355c.1842A>C1.000
embB4248358c.1845C>G1.000
embB4248361c.1848A>G1.000
embB4248362p.Ser617Ala1.000
embB4248373c.1860C>G0.989
embB4248386c.1873C>A0.990
embB4248407p.Leu632Val0.987
embB4248410p.Phe633Leu0.987
embB4248419p.Leu636Met0.987
embB4248425c.1912T>C0.987
embB4248430c.1917T>C0.986
embB4248432p.Trp640Phe0.986
embB4248457c.1944T>C0.976
embB4248472c.1959T>C0.971
embB4248475c.1962G>C0.971
embB4248504p.Asp664Gly0.885
embB4248508c.1995G>A0.885
embB4248512p.Thr667Ser0.878
embB4248535c.2022C>G0.881
embB4249369c.2856T>C1.000
embB4249375c.2862G>C1.000
embB4249381c.2868A>G1.000
embB4249417c.2904A>G0.988
embB4249423p.Asp970Glu0.983
embB4249424p.Leu971Met0.983
embB4249429c.2916C>T0.982
embB4249432c.2919A>G0.965
embB4249435c.2922G>A0.965
embB4249441c.2928A>G0.965
embB4249444c.2931T>C0.965
embB4249447c.2934G>C0.967
embB4249469p.Leu986Met0.978
embB4249486c.2973T>G0.977
embB4249498c.2985G>C0.977
embB4249521p.Ala1003Val0.972
embB4249525c.3012T>C0.971
embB4249529p.Ile1006Val0.969
embB4249532p.Ala1007Thr0.969
embB4249537c.3024A>G0.984
embB4249543c.3030G>C0.984
embB4249546c.3033G>A0.984
embB4249558c.3045A>C0.984
embB4249568p.Ser1019Thr0.963
embB4249573c.3060T>C0.962
embB4249580p.Leu1023Met0.920
embB4249594c.3081G>C0.930
embB4249606c.3093C>A0.821
embB4249609c.3096T>C0.808
embB4249615c.3102C>G0.762
embB4249618c.3105C>G0.737
embB4249624c.3111C>G0.688
embB4249627c.3114G>C0.688
ethA4327396c.78A>G1.000
ethA4327399p.Asp25Glu1.000
ethA4327423c.51G>C1.000
ethA4327435c.39T>G1.000
ethA4327438c.36A>G1.000
ethA4327452p.Val8Leu1.000
ethA4327453c.21A>G1.000
ethA4327459c.15G>A1.000
ethA4327468c.6G>A1.000

Analysis pipeline specifications

TBProfiler Version: 2.1.1

AnalysisProgram
Mappingbwa
Variant CallingBCFtools


Log

Drug Details
The estimated accuracy of drug resistance predictions is:

Drug1Sensitivity (%)Specificity (%)
Isoniazid 92.8 (89.9-95.7)100 (100-100)
Rifampicin 96.2 (93.9-98.5)98.1 (96.8-99.4)
Ethambutal 88.7 (83.6-93.8)81.7 (77.6-85.8)
Pyrazinamide70.9 (62.4-79.4)93.9 (90.6-97.2)
Streptomycin87.1 (82.7-91.5)89.7 (86.0-93.4)
Ethionamide 73.6 (66.7-80.5)93.3 (89.6-97.0)
Moxifloxacin60.0 (29.6-90.4)68.7 (52.6-84.8)
Ofloxacin 85.5 (79.1-91.9)94.9 (91.8-98.0)
Amikacin 82.9 (74.4-91.4)98.3 (96.0-100)
Capreomycin 60.7 (50.6-70.8)90.7 (87.2-94.2)
Kanamycin 87.3 (81.3-93.3)93.4 (89.9-96.9)
Para-aminosalisylic acidNot determinedNot determined
Linezolid Not determinedNot determined
Clofazimine Not determinedNot determined
Bedaquiline Not determinedNot determined
Multi drug resistance91.2 (87.8-94.6)98.4 (97.2-99.6)
Extremely drug resistance75.9 (64.5-87.3)98.4 (97.3-99.5)

Lineages
Lineage2LocationStrainRD type
lineage1Indo-OceanicEAIRD239
lineage1.1Indo-OceanicEAI3;EAI4;EAI5;EAI6RD239
lineage1.1.1Indo-OceanicEAI4;EAI5RD239
lineage1.1.1.1Indo-OceanicEAI4;ZERORD239
lineage1.1.2Indo-OceanicEAI3;EAI5RD239
lineage1.1.3Indo-OceanicEAI6RD239
lineage1.2Indo-OceanicEAI1;EAI2RD239
lineage1.2.1Indo-OceanicEAI2RD239
lineage1.2.2Indo-OceanicEAI1RD239
lineage2East-AsianBeijingRD105
lineage2.1East-Asian (non-Beijing)NoneNone
lineage2.2East-Asian (Beijing)Beijing-RD207RD105;RD207
lineage2.2.2East-Asian (Beijing)Beijing-RD105/RD207RD105;RD207
lineage2.2.1East-Asian (Beijing)Beijing-RD181RD105;RD207;RD181
lineage2.2.1.2East-Asian (Beijing)Beijing-RD142RD105;RD207;RD181;RD142
lineage2.2.1.1East-Asian (Beijing)Beijing-RD150RD105;RD207;RD181;RD150
lineage3East-African-IndianCASRD750
lineage3.1East-African-IndianNon-CAS1-DelhiRD750
lineage3.1.1East-African-IndianCAS1-KiliRD750
lineage3.1.2East-African-IndianCAS;CAS2RD750
lineage3.1.2.1East-African-IndianCAS2RD750
lineage3.1.2.2East-African-IndianCASRD750
lineage4Euro-AmericanLAM;T;S;X;HNone
lineage4.1Euro-AmericanT;X;HNone
lineage4.1.2Euro-American (X-type)T;HNone
lineage4.1.2.1Euro-American (X-type)T1;H1RD182
lineage4.1.1Euro-American (X-type)X1;X2;X3None
lineage4.1.1.2Euro-American (X-type)X1None
lineage4.1.1.1Euro-American (X-type)X2RD183
lineage4.1.1.3Euro-American (Haarlem)X1;X3RD193
lineage4.2Euro-AmericanH;T;LAMNone
lineage4.2.2Euro-American (Ural)T;LAM7-TURNone
lineage4.2.2.1Euro-AmericanLAM7-TURNone
lineage4.2.1Euro-American (TUR)H3;H4None
lineage4.3Euro-American (LAM)mainly-LAMNone
lineage4.3.1Euro-American (LAM)LAM9None
lineage4.3.3Euro-American (LAM)LAM;TRD115
lineage4.3.4Euro-American (LAM)LAMRD174
lineage4.3.4.1Euro-American (LAM)LAM1;LAM2RD174
lineage4.3.4.2Euro-American (LAM)LAM1;LAM4;LAM11RD174
lineage4.3.4.2.1Euro-American (LAM)LAM11RD174
lineage4.3.2Euro-American (LAM)LAM3None
lineage4.3.2.1Euro-American (LAM)LAM3RD761
lineage4.4Euro-AmericanS;TNone
lineage4.4.2Euro-AmericanT1;T2None
lineage4.4.1Euro-American (S-type)S;TNone
lineage4.4.1.2Euro-AmericanT1None
lineage4.4.1.1Euro-AmericanS;OrphansNone
lineage4.5Euro-AmericanH;TRD122
lineage4.6Euro-AmericanT;LAMNone
lineage4.6.1Euro-American (Uganda)T2RD724
lineage4.6.1.1Euro-American T2-UgandaRD724
lineage4.6.1.2Euro-AmericanT2RD724
lineage4.6.2Euro-AmericanT;LAMRD726
lineage4.6.2.1Euro-AmericanT3RD726
lineage4.6.2.2Euro-American (Cameroon)LAM10-CAMRD726
lineage4.7Euro-American (mainly T)T1;T5None
lineage4.8Euro-American (mainly T)T1;T2;T3;T5RD219
lineage4.9Euro-American (H37Rv-like)T1None
lineage5West-Africa 1AFRI_2;AFRI_3RD711
lineage6West-Africa 2AFRI_1RD702
lineage7Lineage 7NoneNone
lineageBOVM. bovisBOV_1;BOV_2None

Citations
1. Coll F, et al. Rapid determination of anti-tuberculosis drug resistance from whole genome sequences. Genome Medicine (in press)
2. Coll F, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications 2014.

Disclaimer
This tool is for Research Use Only and is offered free for use. The London School of Hygiene and Tropical Medicine shall have no liability for any loss or damages of any kind, however sustained relating to the use of this tool.
© 2019 London School of Hygiene and Tropical Medicine;