Run ID: DRR184991
Sample name:
Date: 31-03-2023 07:23:03
Number of reads: 1497149
Percentage reads mapped: 91.77
Strain: lineage4.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.26 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417140 | p.Ala70Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.1 |
fabG1 | 1673249 | c.-191C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169202 | p.Ser471Ala | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747022 | p.Val193Ile | missense_variant | 1.0 |
Rv2752c | 3065377 | p.Val272Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449642 | p.Asn380Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641164 | p.Ile208Val | missense_variant | 1.0 |
ddn | 3986755 | c.-89G>C | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
ethA | 4327265 | p.Thr70Ser | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |