M.orygis;M.bovis
|
1
|
lineage4.5;lineage4.3.3
|
3
|
lineage5.1.2
|
28
|
lineage4.3.2.1;lineage2.2.2
|
2
|
lineage4.1.1
|
255
|
lineage4.3.3;lineage4.1.1.3
|
2
|
lineage6.2.2
|
12
|
lineage4.3.4.2.1
|
1325
|
lineage4.6.1.2;lineage4.6.1.1
|
1
|
lineage7
|
57
|
lineage4.3.4.1;lineage3.1.2
|
1
|
lineage4.2.2;lineage1.1.2
|
2
|
lineage4.8;lineage4.1.2.1
|
2
|
lineage4.9;lineage4.8
|
11
|
lineage2.2.1.2
|
123
|
lineage1.2.1.2
|
113
|
lineage4.1.2.1;lineage4.1.1
|
5
|
lineage5.1.1;lineage4.8
|
1
|
lineage3.1.3;lineage3.1.1
|
1
|
lineage4.4.1.2;lineage2.2.1
|
2
|
lineage2.1
|
211
|
lineage4.4.2;lineage3;lineage1.1.3.1
|
1
|
lineage4.3.2.1;lineage4.1.2.1
|
1
|
lineage4.1.1.3;lineage1.1.3.2
|
2
|
lineage3.1.2.1
|
302
|
lineage4;La1.2.BCG
|
1
|
lineage4.9;lineage2.2.2
|
1
|
lineage4.6.5;lineage4.6.1.2
|
1
|
lineage4.3.4.2.1;lineage1.1.3.2
|
4
|
lineage4.5
|
960
|
La1.2.BCG
|
57
|
lineage4.1.2.1.1
|
250
|
lineage4.4.1.2;lineage4.3.3
|
1
|
lineage4.3.2;lineage4.1.2.1
|
5
|
lineage4.3.4.2.1;lineage4.1.2
|
1
|
lineage4.6.4
|
36
|
lineage1.2.2.2;lineage1.1.3.2
|
3
|
lineage3.1
|
97
|
lineage4.1.3;lineage4.1.2.1;lineage1.1.2
|
1
|
lineage4.8;lineage4.1
|
1
|
lineage4.4;lineage2.2.1
|
1
|
lineage4.3.4.2;lineage3;lineage1.1.3.2
|
1
|
lineage4.9;lineage4.3.3
|
1
|
lineage2.2.1.1;lineage1.1.1
|
1
|
lineage4.3.4.2.1;lineage4.3.3
|
1
|
lineage4.3.3;lineage2.2.1.1
|
2
|
lineage6.2.2;lineage4.3.3
|
1
|
lineage4.3.4.1;lineage4.1.2.1
|
3
|
lineage4.8.1;lineage3.1.1
|
1
|
lineage4.4.1.1;lineage3;lineage1.2.2.2
|
1
|
lineage4.1.1.3;lineage1.1.2
|
1
|
lineage4;lineage2.2.1.1
|
3
|
lineage4.3.4.2;lineage4.1
|
1
|
lineage4.6.1.1;lineage4.1.1.3
|
1
|
lineage1.2.1.1
|
92
|
lineage4.3.4.2.1;lineage2.2.1.1
|
2
|
lineage1.2.2.1
|
147
|
lineage4.3.4.2;lineage4.1.1
|
1
|
lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3.1.1;lineage2.2.1
|
1
|
lineage4.9;lineage4.1.2.1
|
4
|
lineage5.1.3
|
14
|
lineage4.1.2.1;lineage1.1.2
|
3
|
La1.8.1
|
254
|
M.orygis
|
13
|
lineage4.1.2.1
|
3956
|
lineage4.1.3
|
126
|
lineage4.3.4.2;lineage4.1.2.1
|
3
|
lineage4.8.1;lineage2.2.1
|
1
|
lineage4.9;lineage2.1
|
5
|
lineage4;lineage3.1.1;lineage1.1.3.2
|
1
|
lineage4.5;lineage3.1.2
|
1
|
lineage4.3.2;lineage4.1.1.3.1
|
1
|
lineage4.4.1.2;lineage4.3.4.2.1
|
1
|
lineage4.1;lineage2.2.1
|
2
|
lineage4.6.5;lineage3
|
1
|
lineage4.3.4.2.1;lineage1.1.2
|
2
|
lineage4.3.4.2.1;lineage4.3.2.1
|
1
|
lineage1.1.3.2;lineage1.1.2
|
1
|
lineage4.1.1.1
|
576
|
lineage4.3.4.2;lineage2.2.1
|
2
|
lineage6.3.1;lineage5.1.2
|
1
|
lineage4.9;lineage4.8.1;lineage4.1.1
|
1
|
lineage4.4;lineage1.1.2
|
1
|
lineage4.3.1
|
118
|
lineage2.2.2;lineage2.2.1.1
|
3
|
lineage4.4.1
|
28
|
lineage4.9;lineage2.2.1.2
|
1
|
lineage4;lineage1.1.2
|
7
|
lineage4.4.1.1;lineage2.2.1
|
23
|
lineage4.5;lineage2.2.1
|
10
|
lineage4.1.1.3.1
|
250
|
lineage4.7;lineage4.2.1.1
|
1
|
lineage6.2;lineage4.8.2
|
1
|
lineage4.8.2;lineage3.1.3
|
1
|
lineage3.1;lineage2.2.1
|
1
|
lineage4.5;lineage2.2.1.1
|
1
|
lineage4.9;lineage4.3
|
1
|
lineage4.3.2.1;lineage2.2.1.1
|
7
|
lineage4.4.1.1.1
|
317
|
lineage4.4.1;lineage4.1.2.1
|
1
|
lineage4.9;lineage3
|
2
|
lineage4.9;lineage4.5;lineage2.1
|
3
|
lineage4.8.2
|
133
|
lineage5.2
|
32
|
lineage4.8;lineage4.2.1
|
3
|
lineage4.3.4.2;lineage3.1.1
|
1
|
lineage4.6.1
|
22
|
lineage4.6.4;lineage4.3.3
|
1
|
lineage3.1.2;lineage2.2.1
|
2
|
lineage4.1.2.1;lineage2.2
|
2
|
lineage4.1.1.3;lineage1.2.2.2
|
1
|
lineage5.3
|
15
|
lineage5
|
9
|
lineage4.3.2;lineage2.2.1
|
5
|
lineage6.1.2
|
5
|
lineage4;lineage1.1.3.2
|
4
|
lineage4.3.4.2;lineage1.1
|
1
|
lineage4;lineage2
|
1
|
lineage4.6
|
89
|
lineage1.1.1
|
469
|
lineage1.1.3.3;lineage1.1.2
|
1
|
lineage4.8;lineage3.1.2
|
2
|
lineage5.1.4
|
47
|
lineage4.8;lineage4.4.1.1
|
1
|
lineage4.1.1.3.1;lineage3.1.2
|
1
|
lineage4.6.1.1
|
252
|
lineage2.2.2;lineage2.2.1
|
10
|
lineage4.6;lineage2.2.1
|
1
|
lineage4;lineage3.1.2.1;lineage2.2.1;lineage1.2.2.2
|
1
|
lineage4.8;lineage3.1
|
1
|
lineage4.2.2.2;lineage3
|
1
|
lineage4.4.1.1;lineage4.1.2
|
1
|
lineage4.6.1.2;lineage4.2.2.2
|
1
|
lineage3.1.2.1;lineage2.2.1
|
1
|
lineage4.2.2.2;lineage2.2.1
|
2
|
lineage4.3.2.1;lineage2.2.1
|
5
|
lineage2.2.1;lineage1.1.2
|
9
|
lineage4.4;lineage4.1.1.3
|
1
|
lineage4.1.2;lineage1.1.2
|
2
|
lineage4.5;lineage4.2.2
|
1
|
lineage4.4.2;lineage1.2.1.2.1
|
1
|
lineage4.3.2
|
746
|
lineage4.3.4.1;lineage1.1.2
|
1
|
lineage4.4.1.1;lineage4.3.4.1
|
1
|
lineage4.9;lineage2.2.1
|
5
|
lineage4.9;lineage3.1.2.1
|
1
|
lineage4;lineage3.1.2.1
|
2
|
lineage2.2.1.1
|
1533
|
lineage5.3;lineage4.1.2.1
|
1
|
lineage4.3.2.1;lineage3.1.1
|
1
|
lineage6.2;lineage4.9;lineage4.8.2;lineage4.5;lineage4.3.1;lineage2.1
|
1
|
lineage4.3.4.2.1;lineage1.2.2.1
|
3
|
lineage4.3.3;lineage4.1.2;lineage4.1.1.1
|
1
|
lineage4.4.1.1
|
1182
|
lineage4.6.2
|
18
|
lineage6.3.3;lineage6.2;lineage4.8.1;lineage4.6.2.1
|
1
|
lineage4.1;lineage1.1.1.1
|
1
|
lineage3;lineage2.2.1
|
18
|
lineage2.2.1;lineage1.1
|
1
|
lineage4.7;lineage1.1.3.1
|
1
|
lineage4.6.1.1;lineage4.3.4.2;lineage4.3.3
|
1
|
lineage3.1.3
|
156
|
lineage4.1.2
|
1110
|
lineage3
|
4635
|
lineage4.8.1
|
206
|
lineage4.6.2.2
|
518
|
lineage4.3.4.2.1;lineage2.2
|
1
|
lineage4.8;lineage1.1.2
|
1
|
lineage4.9;lineage4.3.4.2
|
1
|
lineage4;lineage1.2.2.2
|
6
|
lineage4.3.3;lineage2.2.1
|
21
|
lineage4.6.1.2;lineage4.1.2
|
1
|
lineage4.3.3;lineage4.1.2
|
2
|
lineage6.3.2
|
9
|
lineage4.1.1.2;lineage3
|
1
|
lineage4.1.2;lineage1.1.3.2
|
1
|
lineage4.1.1.3
|
958
|
lineage4.8.1;lineage4.6.1.2
|
1
|
lineage3;lineage2.2.1.1
|
4
|
lineage6.1.3;lineage2.2.1
|
1
|
lineage4.9;lineage4.6.2.2
|
1
|
lineage4.3.3;lineage1.2.2.2
|
1
|
lineage4.1.1;lineage2.2.1
|
4
|
lineage4.4.1.1;lineage4.3.2.1
|
2
|
lineage4.9;lineage4.8.1
|
1
|
lineage6.2.3;lineage4.1.3;lineage4.1.2.1
|
1
|
lineage4.8;lineage4.3.4.2
|
1
|
lineage4.3;lineage2.2.1
|
1
|
lineage4.8;lineage4.2.2.2
|
1
|
lineage3;lineage1.1.3.1
|
1
|
lineage4.4.1.1.1;lineage3.1.1
|
1
|
lineage4.9
|
448
|
lineage4.9;lineage4.5
|
1
|
lineage1.1.3.3
|
75
|
lineage4.9;lineage3.1.1
|
1
|
lineage6.3.3
|
12
|
lineage4.7;lineage4.6.1.2
|
2
|
lineage4.9;lineage2.2.1;lineage1
|
1
|
lineage4.4.1.1.1;lineage4.1.2
|
1
|
lineage4.5;lineage4.4
|
1
|
lineage4.3.4.1;lineage4.1
|
1
|
lineage4.7;lineage4.3.4.1
|
1
|
lineage4;lineage1.2.2.1
|
4
|
lineage4.4.1.2
|
190
|
lineage4.3.4.2.1;lineage3
|
3
|
lineage4.8.1;lineage4.3.2.1
|
1
|
lineage4.3.2.1;lineage3
|
1
|
lineage3.1.2;lineage1.2.2.2
|
1
|
lineage2.2.1.2;lineage1.1.1
|
1
|
lineage4.3.4.2.1;lineage4.3.4.1
|
3
|
lineage4.3
|
104
|
lineage4.1.1.3;lineage2.2.1.2
|
1
|
lineage4.7;lineage2.2.1
|
1
|
lineage4.6.1.2;lineage4.3.3
|
2
|
lineage4.5;lineage4.4.2
|
6
|
lineage4;lineage1.2.1.1
|
1
|
lineage6.2;lineage4.9;lineage4.3.2;lineage4.3.1;lineage2.1
|
1
|
La2
|
16
|
lineage4.2.2.1;lineage2
|
1
|
lineage4.2;lineage4.1.2
|
1
|
lineage2.2.2
|
876
|
lineage4.1.2;lineage4.1.1.1
|
1
|
lineage9
|
3
|
lineage4.3.3;lineage1.1.3.1
|
1
|
lineage2.2.1.1;lineage1.1.1.1
|
1
|
lineage4.1.2.1;lineage3
|
1
|
lineage2.2.1;lineage1.2.1.2
|
1
|
lineage3;lineage1.2.1.2.1
|
1
|
lineage6.1.1
|
18
|
lineage4;lineage3.1.3
|
3
|
lineage3.1.2.2
|
56
|
lineage1.1.2
|
1236
|
lineage4.8
|
4071
|
lineage4.3.2.1;lineage3.1.2
|
1
|
lineage4.2.1;lineage2.2.1.1
|
1
|
lineage4.1;lineage1.1.2
|
1
|
lineage4.3.4.2.1;lineage4.1.1.3
|
2
|
lineage4.8;lineage1.2.2.2
|
1
|
lineage1.1
|
26
|
lineage1.1.1.1
|
691
|
lineage4.2;lineage2.2.1
|
1
|
lineage4.1;lineage1.1
|
1
|
lineage4.9;lineage4.3.2.1
|
2
|
lineage4.8.2;lineage4.3.1
|
1
|
lineage4
|
332
|
lineage4;lineage3.1.1
|
6
|
lineage6.2.3
|
11
|
lineage4.3.4.2.1;lineage3.1.2
|
3
|
La3
|
50
|
lineage4.3.3;lineage4.3.2.1
|
2
|
lineage4.3.4.2;lineage4.3.3
|
5
|
lineage5.1.2;lineage5.1.1
|
1
|
lineage6;lineage4.6.2.2
|
1
|
lineage4.3.3;lineage1.2.1.2.1
|
1
|
lineage4.3.2;lineage4.1.1.1
|
1
|
lineage4.2.2.2;lineage3.1.2
|
1
|
lineage4.6;lineage3
|
1
|
lineage4.8;lineage4.3.3
|
5
|
lineage4.6.1.1;lineage4.3.4.2.1
|
2
|
lineage4.2.1
|
434
|
lineage2.2.1;M.orygis
|
1
|
lineage4.1.2.1;lineage2.2.1
|
11
|
La1.7.X-unk4
|
9
|
lineage1.2.1.2.1
|
839
|
lineage4.3.4.1
|
579
|
lineage4.5;lineage3
|
2
|
lineage4;lineage2.2.1
|
36
|
lineage4.7;lineage4.1.2.1
|
1
|
lineage4.4;lineage3
|
1
|
lineage4.3.4.2.1;lineage4.1.1
|
1
|
lineage2.2
|
6
|
lineage4.3.4.1;lineage2.2.1.1
|
1
|
lineage2.2.1.1;lineage2.1
|
1
|
La1.1
|
3
|
lineage4.9;lineage2.2
|
2
|
lineage1.2.1
|
5
|
lineage4.1.2;lineage2.2.1
|
3
|
lineage4.9;lineage4.3.2
|
1
|
lineage4.1.1.3;lineage2.2.1
|
3
|
lineage6.2.2;lineage4
|
1
|
lineage5.1.2;lineage4.1.1.3
|
1
|
lineage4;lineage3.1.2
|
2
|
lineage4.1
|
93
|
La1.7
|
1
|
lineage3;lineage1.1.2
|
5
|
La1.2 BCG
|
2
|
La1.8.2
|
6
|
lineage4.1.2;lineage3
|
2
|
lineage4.1.2.1;lineage1.1.3.2
|
1
|
lineage4.3.4.1;lineage4.3.2.1
|
1
|
lineage4.6.2.1
|
2
|
lineage4;lineage3
|
16
|
lineage4.3.4;lineage3.1.1
|
1
|
lineage4.6.1.2;lineage4.3.4.2.1
|
2
|
lineage4.7;lineage4.6.1.1
|
1
|
|
545
|
lineage4.1.2;lineage3.1.1
|
1
|
lineage4.2.2.1
|
137
|
lineage4.3.4
|
6
|
lineage4.8.2;lineage4.1.1.3.1
|
1
|
lineage6
|
19
|
lineage4.8;lineage4.7
|
1
|
lineage4.8;La3
|
1
|
lineage4.8;lineage4.6.2.2
|
2
|
lineage4.8;lineage4.5
|
1
|
lineage4.2.1.1
|
235
|
lineage3.1.2;lineage2.2.1.1
|
2
|
lineage4.3.3;lineage4.1.1
|
4
|
lineage4.3.2.1
|
1498
|
lineage4.8.2;lineage2.2.1
|
1
|
lineage4.3.4.2.1;lineage2.2.1
|
4
|
lineage4.1.1.2
|
129
|
lineage3.1.1;La1.1
|
4
|
lineage4.9;lineage4.3.4.2.1;lineage4.1;lineage3.1.1;lineage1.1.3.2
|
1
|
lineage4.1.1.3;lineage3
|
2
|
La1.3
|
3
|
lineage4.4.2;lineage1.1.1.1
|
2
|
lineage4.8.3
|
23
|
lineage4.3.3;lineage1.1.2
|
1
|
lineage2.2.1;lineage1.2.1.2.1
|
3
|
lineage4.3.3;lineage4.3.2
|
3
|
lineage4.8;lineage4.6
|
1
|
lineage4.6.2;lineage3
|
1
|
lineage5.1.5
|
13
|
lineage3;M.bovis
|
1
|
lineage5.1.1
|
131
|
lineage4.2.1.1;lineage2.2
|
1
|
lineage1.1.3
|
58
|
lineage2.2.1;lineage1.1.1.1
|
17
|
lineage2.2.1;lineage1.1.3
|
1
|
lineage4.3.3;lineage3.1
|
1
|
lineage4.3.2.1;lineage1.2.2.2
|
1
|
La1.4
|
14
|
lineage4.2.2
|
289
|
lineage3.1.1;lineage1.1.3.2
|
3
|
lineage4.6.5
|
65
|
lineage4.8;lineage1.1.1
|
1
|
lineage1.2.2.2;lineage1.1.2
|
6
|
lineage4.3.4.2.1;lineage1.2.2.2
|
1
|
lineage4.9.1
|
101
|
lineage4.4
|
81
|
lineage1
|
6
|
lineage4.1.1.3;lineage2.2.2
|
1
|
lineage4.4.2;lineage4.2.2
|
1
|
lineage4.8;lineage4.1.3
|
1
|
lineage4;lineage1.2.1.2.1
|
1
|
lineage4.4.1;lineage4.3.4.1
|
1
|
lineage4.9;lineage1.1.2
|
2
|
lineage4.9;lineage3.1.2
|
1
|
lineage1.2.2.2
|
735
|
lineage6.2.2;lineage4.9
|
1
|
lineage4.1.1;lineage2.2.1.1
|
1
|
lineage2.2.1;lineage1.1.1
|
5
|
lineage4.3.4.1;lineage4.3.3
|
2
|
La1
|
5
|
lineage3.1.2
|
458
|
lineage4.8;lineage3
|
4
|
lineage4.6.3
|
41
|
M.bovis
|
191
|
lineage4.8;lineage2.2.1
|
9
|
lineage4.3.1.1
|
45
|
lineage1.1.3.1
|
188
|
lineage1.2.2.2;lineage1.1.3
|
2
|
lineage4.4.1.1;lineage4.3.3
|
1
|
lineage3.1.1
|
802
|
lineage4.2.2.2
|
479
|
lineage4.2.2;lineage2.2.1
|
2
|
lineage4.2.1;lineage4.1.2
|
2
|
lineage6.2.1
|
17
|
lineage4.3.1;lineage2.1
|
1
|
M.caprae;M.bovis
|
1
|
La1.7.X-unk5
|
1
|
lineage4.2.2;lineage1.1.1
|
1
|
lineage4.4.1.1.1;lineage2.2.1
|
1
|
lineage6.3.1
|
82
|
lineage4.4.2
|
443
|
lineage4.7
|
576
|
lineage1.1.3.2
|
211
|
lineage6.3.1;lineage5.1.2;lineage5.1.1
|
1
|
lineage4.7;lineage3
|
2
|
lineage5.1
|
33
|
lineage4.8.1;lineage4.3.3
|
1
|
lineage4.9;lineage3;lineage2.1
|
1
|
lineage6.1.3
|
4
|
lineage4.3;lineage2.1
|
1
|
La1.6
|
8
|
lineage4.2;lineage2.1;lineage1.1.2
|
1
|
lineage4.6.1.2
|
480
|
lineage2.2.1;lineage1.2.2.2
|
4
|
lineage4.3.3
|
2668
|
lineage4.3.3;lineage3
|
6
|
lineage2.1;lineage1
|
1
|
lineage1.2.2
|
1
|
lineage4.3.2;lineage4.1.1.3
|
1
|
lineage4.1.2.1;lineage3.1
|
1
|
lineage4.1;lineage3
|
1
|
lineage4.2
|
10
|
lineage4.3.4.2.1;lineage3.1.1
|
4
|
lineage4.3.4.2.1;lineage3.1
|
1
|
lineage2.2.1
|
12010
|
lineage4.8;lineage2.2.1.1
|
1
|
lineage4.4.2;lineage2.2.1
|
6
|
lineage3.1.2.1;lineage1.1.2
|
1
|
lineage4.7;lineage4.4.1;lineage4.3.4.2.1;lineage4.3.3;lineage2.2.1;lineage1.1.3
|
1
|
lineage4.6.1.1;lineage4.3.4.2
|
1
|
lineage4.4;lineage4.3.4.2.1;lineage1.1.2
|
1
|
lineage4;lineage1.1.3.3
|
1
|
lineage4.3.4.2
|
957
|
lineage4.5;lineage2.2
|
2
|
lineage2.2;lineage1.1.1.1
|
1
|
lineage4.1.4
|
59
|
lineage4.4.1.1;lineage3
|
3
|
lineage4.9;lineage4.3.4.2.1
|
4
|
M.caprae
|
1
|
lineage4.3.3;lineage4.1.2.1
|
9
|
lineage4.9;lineage4.1.1.3;lineage3;lineage2.2.1
|
1
|
La1.7.1
|
45
|
lineage4.1.2;lineage1.2.2.2
|
1
|
lineage3;lineage1.2.2.2
|
4
|
lineage1.1.3.3;lineage1.1.1
|
1
|
lineage4.6.2.2;lineage2.2.1.1
|
1
|
lineage4.2.1;lineage2.2.1
|
6
|
La1.2
|
16
|
lineage4.1.2.1;lineage3;lineage2.2.1.1
|
1
|