| lineage | Count |
|---|---|
| lineage2.2.1 | 6826 |
| lineage4.5 | 613 |
| lineage2.2.2 | 468 |
| lineage4.4.2 | 277 |
| lineage4.1.2.1 | 2021 |
| lineage2.2.1.1 | 752 |
| lineage4.2.2 | 179 |
| lineage2.1 | 132 |
| lineage4.3.2.1 | 1051 |
| lineage4.1.1.3 | 555 |
| lineage3.1.3 | 109 |
| lineage4.8 | 2310 |
| lineage4 | 175 |
| lineage3 | 2608 |
| lineage4.2.1.1 | 194 |
| lineage4.3.3 | 1292 |
| lineage4.1.1.2 | 83 |
| lineage4.4 | 40 |
| lineage1.2.1.2 | 84 |
| lineage4.4.1.2 | 141 |
| lineage1.1.1.1 | 464 |
| lineage4.2 | 4 |
| lineage4.1.1.3.1 | 205 |
| lineage3.1.1 | 645 |
| lineage4.1.1.1 | 350 |
| M.bovis | 330 |
| lineage4.8.2 | 114 |
| lineage1.2.2.2 | 329 |
| lineage4.6.2.2 | 219 |
| lineage1.2.2.1 | 103 |
| lineage4.3.4.2.1 | 1084 |
| lineage1.1.2 | 646 |
| lineage5.1.3 | 11 |
| lineage3.1.2.2 | 42 |
| lineage1.1.3.1 | 111 |
| lineage4.1 | 52 |
| lineage5.1.2 | 21 |
| lineage4.2.2.2 | 238 |
| lineage4.8.1 | 125 |
| lineage4.6.1 | 11 |
| lineage3.1 | 46 |
| lineage4.9 | 273 |
| lineage4.1.1 | 73 |
| lineage3.1.2 | 179 |
| lineage3.1.2.1 | 116 |
| lineage4.4.1.1 | 789 |
| lineage6 | 8 |
| lineage4.2.2.1 | 114 |
| M.orygis | 32 |
| lineage1.2.1.2.1 | 680 |
| lineage4.6.1.1 | 130 |
| lineage5.1 | 32 |
| lineage4.3.4.2 | 636 |
| lineage4.6.3 | 33 |
| lineage4.3.1.1 | 32 |
| lineage4.2.1 | 227 |
| lineage4.3.4.1 | 354 |
| lineage4.6.5 | 40 |
| lineage1.1.3.2 | 174 |
| lineage4.1.2 | 786 |
| lineage4.1.4 | 34 |
| lineage6.3.1 | 66 |
| lineage1.1.3 | 35 |
| lineage1.2.1.1 | 71 |
| lineage4.6.1.2 | 185 |
| lineage4.6 | 51 |
| lineage4.7 | 341 |
| lineage1.1.3.3 | 37 |
| lineage4.6.2.1 | 2 |
| lineage4.3 | 70 |
| lineage1.1.1 | 388 |
| lineage4.3.2 | 392 |
| lineage4.6.4 | 26 |
| lineage4.9.1 | 79 |
| lineage1.2.1 | 5 |
| lineage5.1.4 | 35 |
| lineage4.6.2 | 13 |
| lineage7 | 52 |
| lineage5.1.1 | 93 |
| lineage6.1.3 | 2 |
| lineage6.2.2 | 11 |
| lineage6.3.3 | 10 |
| lineage6.2.3 | 11 |
| lineage4.1.3 | 68 |
| lineage5.1.5 | 12 |
| lineage4.8.3 | 23 |
| lineage4.3.1 | 85 |
| lineage6.1.1 | 13 |
| lineage6.3.2 | 8 |
| lineage4.4.1.1.1 | 239 |
| lineage2.2.1.2 | 48 |
| lineage5.2 | 30 |
| lineage5.3 | 11 |
| lineage5 | 8 |
| M.caprae | 10 |
| lineage6.1.2 | 4 |
| lineage4.1.2.1.1 | 237 |
| lineage6.2.1 | 15 |
| lineage1 | 1 |
| lineage4.3.4 | 4 |
| lineage1.1 | 25 |
| lineage9 | 3 |
| lineage4.4.1 | 2 |
| Gene | Locus tag | Type | Variant | Count |
|---|---|---|---|---|
| katG | Rv1908c | missense | p.Ser315Thr | 7180 |
| rrs | rrs | non_coding | r.1401a>g | 5304 |
| rpoB | Rv0667 | *missense | p.Ser450Leu | 5023 |
| fabG1 | Rv1483 | non_coding | c.-15C>T | 4038 |
| gyrA | Rv0006 | missense | p.Asp94Gly | 3885 |
| gyrA | Rv0006 | missense | p.Ala90Val | 3390 |
| rpsL | Rv0682 | missense | p.Lys43Arg | 3360 |
| embB | Rv3795 | missense | p.Met306Val | 1936 |
| embB | Rv3795 | missense | p.Met306Ile | 1677 |
| gyrA | Rv0006 | missense | p.Asp94Ala | 1435 |