Upload your next generation sequencing data in fastQ format. Files will be processed using the tb-profiler pipeline with default parameters. You may select the technology used to generate the data (Illumina or Oxford Nanopore). Samples will be process with a first in first out policy so please be patient as there may be runs waiting to be processed before yours.
Please note: at the moment we can only accomodate uploads of files under 4GB. If you have files which are larger or you require many isolates to be processed and have access to a linux or osX operating system then it might be worthwhile to run the commandline version of tb-profiler. For more information on this please visit the github repository.
Batch upload

You can upload multiple samples together to batch process them. By default, paired files must use _1.fastq.gz and _2.fastq.gz as the file suffix in order for them to be paired correctly. The suffix can be changed in the advanced options.

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File suffix
Read suffix. Use this option to change the default suffix of files. For example if your fastq file is named sample1_R1.fastq.gz then your suffix should be _R1.fastq.gz
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