Run ID: ERR026639
Sample name:
Date: 2024-04-15T15:49:32.827274
Number of reads: 617208
Percentage reads mapped: 44.84
Median coverage: 8.0
Strain: lineage4.6.2.2
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4.6 | Euro-American | None | 0.37 |
lineage4.6.2 | Euro-American | RD726 | 0.42 |
lineage4.6.2.2 | Euro-American (Cameroon) | RD726 | 0.46 |
lineage4 | Euro-American | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 0.8 | clofazimine | Uncertain significance |
bedaquiline | Uncertain significance |