TB-Profiler result

Run: ERR027082

Summary

Run ID: ERR027082

Sample name:

Date: 31-03-2023 08:20:39

Number of reads: 7807900

Percentage reads mapped: 94.58

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mmpR5 779263 c.275dupA frameshift_variant&stop_gained 0.98
fbiC 1304071 p.Thr381Pro missense_variant 0.15
rpoA 3878641 c.-135delG upstream_gene_variant 0.12