Run ID: ERR040138
Sample name:
Date: 31-03-2023 08:48:11
Number of reads: 14569755
Percentage reads mapped: 99.34
Strain: lineage4.9
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761100 | p.Gln432Lys | missense_variant | 1.0 | rifampicin |
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7493 | c.192C>T | synonymous_variant | 0.2 |
rpoB | 762249 | p.Leu815Val | missense_variant | 0.22 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.45 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.2 |
rpoC | 766710 | p.Gly1114Val | missense_variant | 1.0 |
rplC | 800997 | p.Asn63Lys | missense_variant | 0.19 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.3 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.23 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.28 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.22 |
eis | 2715072 | c.261G>A | synonymous_variant | 1.0 |
folC | 2746186 | c.1413G>C | synonymous_variant | 0.2 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.21 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.17 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.19 |
thyA | 3073817 | p.Gln219Glu | missense_variant | 0.26 |
Rv3083 | 3448388 | c.-116C>T | upstream_gene_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.23 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.16 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.27 |
panD | 4043967 | c.315C>T | synonymous_variant | 1.0 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.18 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.16 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.23 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.38 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.19 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.23 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.28 |
ethR | 4328122 | p.Pro192Ser | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |