TB-Profiler result

Run: ERR072018
Summary

Run ID: ERR072018

Sample name:

Date: 31-03-2023 09:09:09

Number of reads: 4978519

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
PPE35 2169320 p.Leu431Phe missense_variant 0.28
PPE35 2169866 c.747G>C synonymous_variant 0.25
ribD 2987307 p.Ala157Pro missense_variant 0.22
thyA 3073806 c.666C>G synonymous_variant 0.31
clpC1 4038857 c.1848C>A synonymous_variant 0.21
embC 4239842 c.-21C>A upstream_gene_variant 0.25
embC 4242425 p.Arg855Gly missense_variant 0.21