TB-Profiler result

Run: ERR10370895
Summary

Run ID: ERR10370895

Sample name:

Date: 31-03-2023 10:14:22

Number of reads: 650604

Percentage reads mapped: 99.73

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 9385 p.Arg695His missense_variant 0.11
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471966 n.121G>T non_coding_transcript_exon_variant 0.11
folC 2746986 p.Leu205Ile missense_variant 0.11
Rv3236c 3612186 p.Phe311Ile missense_variant 0.12
gid 4407600 c.603C>G synonymous_variant 0.15