TB-Profiler result

Run: ERR10465923
Summary

Run ID: ERR10465923

Sample name:

Date: 31-03-2023 10:23:45

Number of reads: 7194596

Percentage reads mapped: 99.74

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
eis 2715072 c.261G>A synonymous_variant 1.0
Rv3083 3448388 c.-116C>T upstream_gene_variant 1.0
fprA 3474792 c.786G>A synonymous_variant 1.0
rpoA 3877759 p.Pro250Leu missense_variant 1.0
panD 4043967 c.315C>T synonymous_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.34
ethR 4328122 p.Pro192Ser missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0