TB-Profiler result

Run: ERR10465960
Summary

Run ID: ERR10465960

Sample name:

Date: 31-03-2023 10:25:04

Number of reads: 1595881

Percentage reads mapped: 99.47

Strain: lineage4

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 9719 c.2418G>C synonymous_variant 1.0
fgd1 491247 c.465C>T synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1304665 c.1735C>T synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv2752c 3065825 p.Pro123Ser missense_variant 1.0
alr 3840915 p.Pro169Arg missense_variant 0.98
embC 4241761 c.1899G>A synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243310 c.78G>T synonymous_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.19
whiB6 4338229 p.Leu98Arg missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0