TB-Profiler result

Run: ERR10796604
Summary

Run ID: ERR10796604

Sample name:

Date: 31-03-2023 11:12:20

Number of reads: 2245380

Percentage reads mapped: 100.0

Strain: lineage4.7

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.7 Euro-American (mainly T) T1;T5 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 777254 c.1227G>A synonymous_variant 0.11
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1303954 p.Glu342Lys missense_variant 0.18
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474294 n.637C>G non_coding_transcript_exon_variant 1.0
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 1.0
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.1
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.12
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.12
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
fbiA 3641528 p.Val329Glu missense_variant 0.12
clpC1 4040897 c.-193G>A upstream_gene_variant 0.29
embC 4240001 p.Thr47Ala missense_variant 1.0
embC 4240238 p.Ala126Thr missense_variant 0.11
embC 4242084 p.Leu741Gln missense_variant 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244219 c.987C>A synonymous_variant 0.25
embB 4247304 p.Gly264Asp missense_variant 0.1
embB 4247961 c.1450delG frameshift_variant 0.11
embB 4249732 c.3219C>G synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0