Run ID: ERR10796607
Sample name:
Date: 31-03-2023 11:12:23
Number of reads: 638219
Percentage reads mapped: 100.0
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620803 | p.Phe305Ile | missense_variant | 0.12 |
rpoC | 764732 | p.Phe455Leu | missense_variant | 0.13 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765809 | p.Thr814Ala | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800981 | p.Ser58Asn | missense_variant | 0.11 |
rplC | 801119 | p.Glu104Val | missense_variant | 0.11 |
embR | 1416971 | p.Ala126Asp | missense_variant | 0.18 |
atpE | 1461077 | c.35delG | frameshift_variant | 0.2 |
atpE | 1461207 | p.Ile55Phe | missense_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673412 | c.-28G>A | upstream_gene_variant | 0.12 |
fabG1 | 1674028 | p.Arg197Trp | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289314 | c.-73T>C | upstream_gene_variant | 0.22 |
kasA | 2518320 | p.Asp69Gly | missense_variant | 0.12 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
ribD | 2987546 | c.708C>T | synonymous_variant | 0.2 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3074160 | c.311delC | frameshift_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449139 | c.636A>T | synonymous_variant | 0.2 |
Rv3083 | 3449179 | p.Ile226Leu | missense_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568791 | c.-112G>A | upstream_gene_variant | 0.22 |
fbiB | 3642428 | c.894G>A | synonymous_variant | 0.18 |
alr | 3840416 | c.1005C>T | synonymous_variant | 0.17 |
ddn | 3986695 | c.-149G>A | upstream_gene_variant | 0.17 |
ddn | 3987283 | p.Val147Ala | missense_variant | 0.17 |
clpC1 | 4039421 | c.1284C>T | synonymous_variant | 0.2 |
clpC1 | 4039519 | p.Pro396Ser | missense_variant | 0.12 |
embC | 4239710 | c.-153C>T | upstream_gene_variant | 0.15 |
embC | 4239897 | p.Val12Ala | missense_variant | 0.22 |
embC | 4242182 | p.Ala774Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4246045 | p.Val938Gly | missense_variant | 0.11 |
embB | 4247341 | c.828C>T | synonymous_variant | 0.33 |
embB | 4249593 | p.Thr1027Met | missense_variant | 0.15 |
aftB | 4268040 | p.Leu266Pro | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407581 | p.Gly208Arg | missense_variant | 0.15 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |