TB-Profiler result

Run: ERR10796645
Summary

Run ID: ERR10796645

Sample name:

Date: 31-03-2023 11:13:07

Number of reads: 44752

Percentage reads mapped: 100.0

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8266 p.Ala322Gly missense_variant 0.67
rpoB 761087 c.1281C>T synonymous_variant 1.0
rpoC 763603 p.Cys78* stop_gained 1.0
mmpL5 777091 p.Val464Met missense_variant 0.67
whiB6 4338595 c.-75delG upstream_gene_variant 1.0