Run ID: ERR11043652
Sample name:
Date: 31-03-2023 11:38:28
Number of reads: 4784810
Percentage reads mapped: 99.7
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6358 | c.-944C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.25 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.23 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473630 | n.-28G>C | upstream_gene_variant | 0.97 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.29 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.21 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.25 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.61 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.36 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.18 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.22 |
rpoA | 3878590 | c.-83G>T | upstream_gene_variant | 0.27 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.3 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.22 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.57 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.32 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.36 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.1 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.19 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |