Run ID: ERR11044555
Sample name:
Date: 31-03-2023 11:55:46
Number of reads: 1335002
Percentage reads mapped: 99.67
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7592 | c.291G>A | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.19 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1417018 | c.330C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.38 |
Rv2752c | 3065915 | c.277C>T | synonymous_variant | 0.1 |
ald | 3087818 | p.Cys333Trp | missense_variant | 0.14 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.5 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.2 |
rpoA | 3878609 | c.-102T>C | upstream_gene_variant | 0.67 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.43 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.21 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338614 | c.-93G>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |