Run ID: ERR11044811
Sample name:
Date: 31-03-2023 12:00:44
Number of reads: 4099892
Percentage reads mapped: 99.71
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6358 | c.-944C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.16 |
ald | 3087818 | p.Cys333Trp | missense_variant | 0.17 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.51 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.33 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.2 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.14 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.38 |
clpC1 | 4039643 | c.1062C>T | synonymous_variant | 1.0 |
embC | 4239767 | c.-96G>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246529 | p.Ser6Arg | missense_variant | 0.18 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.52 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |