Run ID: ERR11049735
Sample name:
Date: 01-04-2023 18:32:02
Number of reads: 4753584
Percentage reads mapped: 99.93
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.2 |
PPE35 | 2170219 | p.Ala132Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.21 |
thyA | 3074139 | c.333G>A | synonymous_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.61 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.28 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.22 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.31 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.15 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.36 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246529 | p.Ser6Arg | missense_variant | 0.32 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |