Run ID: ERR11049917
Sample name:
Date: 02-04-2023 02:57:41
Number of reads: 4412377
Percentage reads mapped: 99.73
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.24 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.26 |
mshA | 576453 | p.Val369Gly | missense_variant | 0.26 |
mshA | 576606 | p.Ala420Gly | missense_variant | 0.39 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.29 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.18 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.29 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476058 | n.2401T>G | non_coding_transcript_exon_variant | 0.18 |
inhA | 1673346 | c.-856C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.21 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.31 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.13 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.16 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.18 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.43 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.36 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.25 |
rpoA | 3878580 | c.-73A>C | upstream_gene_variant | 0.19 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.79 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.3 |
embC | 4240427 | p.Ser189Cys | missense_variant | 0.17 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.41 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.21 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.27 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.27 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338712 | c.-191T>C | upstream_gene_variant | 1.0 |