Run ID: ERR11050115
Sample name:
Date: 02-04-2023 12:22:00
Number of reads: 4072853
Percentage reads mapped: 99.82
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
ccsA | 619900 | p.Leu4Met | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.19 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170352 | c.261C>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.21 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.83 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.38 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.43 |
fbiA | 3640901 | p.Gln120Arg | missense_variant | 1.0 |
rpoA | 3878590 | c.-83G>C | upstream_gene_variant | 0.27 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.88 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.15 |
embC | 4240422 | p.Glu187Val | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243682 | c.450T>G | synonymous_variant | 0.2 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.28 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.17 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.33 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.24 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.19 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |