Run ID: ERR11067205
Sample name:
Date: 04-04-2023 09:45:45
Number of reads: 2246940
Percentage reads mapped: 99.67
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.38 |
mshA | 576462 | p.Ala372Gly | missense_variant | 0.18 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.2 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.24 |
rpsA | 1834768 | p.Lys409Asn | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.18 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288834 | p.Asp136Glu | missense_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.37 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.18 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.33 |
whiB7 | 3568433 | p.Arg83Gly | missense_variant | 0.21 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.22 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.53 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.21 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |