Run ID: ERR11068849
Sample name:
Date: 07-04-2023 04:24:15
Number of reads: 3176415
Percentage reads mapped: 99.62
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.99 |
mshA | 575894 | p.Val183Met | missense_variant | 0.14 |
mshA | 576106 | c.759C>G | synonymous_variant | 0.25 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.18 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.25 |
ccsA | 620122 | c.236delG | frameshift_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777347 | c.1134C>T | synonymous_variant | 0.5 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714961 | c.372C>T | synonymous_variant | 0.18 |
folC | 2746367 | c.1231delG | frameshift_variant | 0.12 |
pepQ | 2859582 | c.837G>A | synonymous_variant | 0.12 |
fprA | 3475300 | p.Ala432Thr | missense_variant | 0.2 |
whiB7 | 3568424 | p.Pro86Ser | missense_variant | 0.12 |
fbiB | 3642161 | c.627G>A | synonymous_variant | 0.15 |
rpoA | 3877701 | c.807G>T | synonymous_variant | 0.38 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.31 |
clpC1 | 4038177 | p.Pro843Leu | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4248329 | p.Met606Leu | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408362 | c.-160A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |