TB-Profiler result

Run: ERR11081894
Summary

Run ID: ERR11081894

Sample name:

Date: 09-04-2023 14:58:37

Number of reads: 4453407

Percentage reads mapped: 99.78

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 8411 c.1110C>G synonymous_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.21
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2170065 p.Ala183Gly missense_variant 0.25
fbiD 3339734 p.Ala206Gly missense_variant 0.42
rpoA 3878637 c.-130G>C upstream_gene_variant 0.11
rpoA 3878641 c.-134C>G upstream_gene_variant 0.16
embB 4246529 p.Ser6Arg missense_variant 0.2
embB 4246584 p.Arg24Pro missense_variant 0.35
embB 4248324 p.Ala604Gly missense_variant 0.19
embB 4249288 c.2775G>A synonymous_variant 0.99
whiB6 4338595 c.-75delG upstream_gene_variant 1.0