Run ID: ERR1679655
Sample name:
Date: 31-03-2023 14:55:36
Number of reads: 432794
Percentage reads mapped: 99.67
Strain: lineage4.6.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 1.0 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.27 |
fgd1 | 491199 | p.Met139Ile | missense_variant | 0.29 |
ccsA | 620128 | p.Gly80Trp | missense_variant | 0.4 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.32 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776984 | p.Phe499Leu | missense_variant | 0.17 |
mmpR5 | 778298 | c.-692C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304475 | c.1545G>C | synonymous_variant | 0.15 |
embR | 1416951 | p.Gln133Lys | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834901 | p.Ala454Ser | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102761 | c.282G>A | synonymous_variant | 0.12 |
katG | 2155061 | p.Trp351Arg | missense_variant | 0.13 |
katG | 2155389 | c.723C>G | synonymous_variant | 1.0 |
PPE35 | 2169881 | p.Ser244Arg | missense_variant | 0.2 |
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 0.96 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289379 | c.-138T>G | upstream_gene_variant | 0.12 |
pncA | 2290146 | c.-905G>T | upstream_gene_variant | 0.12 |
folC | 2746850 | p.Val250Glu | missense_variant | 0.15 |
folC | 2747280 | p.Arg107Cys | missense_variant | 0.18 |
Rv2752c | 3064612 | p.Ile527Thr | missense_variant | 0.12 |
Rv2752c | 3064659 | c.1532dupT | frameshift_variant | 0.12 |
Rv2752c | 3064838 | c.1354T>C | synonymous_variant | 0.2 |
thyX | 3067460 | c.486G>A | synonymous_variant | 0.22 |
thyX | 3067474 | p.Pro158Ala | missense_variant | 1.0 |
Rv3083 | 3448567 | p.His22Asp | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612571 | c.546C>T | synonymous_variant | 1.0 |
fbiB | 3642085 | p.Gly184Ala | missense_variant | 0.4 |
rpoA | 3878237 | p.Glu91* | stop_gained | 0.11 |
clpC1 | 4039550 | c.1155G>T | synonymous_variant | 0.13 |
embA | 4242550 | c.-683C>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242655 | c.-578A>G | upstream_gene_variant | 0.12 |
embA | 4244005 | p.Ile258Ser | missense_variant | 0.2 |
embA | 4245535 | p.Ser768Ile | missense_variant | 0.22 |
embB | 4248231 | p.Arg573Leu | missense_variant | 0.14 |
aftB | 4267272 | p.Lys522Arg | missense_variant | 1.0 |
aftB | 4268887 | c.-51C>T | upstream_gene_variant | 0.11 |
ethR | 4326739 | c.-810G>C | upstream_gene_variant | 1.0 |
ethA | 4328004 | c.-531C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |