Run ID: ERR1750908
Sample name:
Date: 31-03-2023 14:59:31
Number of reads: 724357
Percentage reads mapped: 83.4
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7601 | c.300C>G | synonymous_variant | 0.15 |
gyrA | 7607 | c.306C>G | synonymous_variant | 0.17 |
gyrA | 7619 | c.318C>G | synonymous_variant | 0.2 |
gyrA | 7628 | c.327G>C | synonymous_variant | 0.22 |
gyrA | 7631 | c.330G>C | synonymous_variant | 0.22 |
gyrA | 7637 | c.336C>G | synonymous_variant | 0.22 |
gyrA | 7652 | c.351C>T | synonymous_variant | 0.2 |
gyrA | 7658 | c.357A>G | synonymous_variant | 0.2 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.2 |
gyrA | 7670 | c.369A>G | synonymous_variant | 0.2 |
gyrA | 7688 | c.387C>T | synonymous_variant | 0.2 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.2 |
gyrA | 7697 | c.396C>G | synonymous_variant | 0.22 |
gyrA | 7703 | c.402G>C | synonymous_variant | 0.22 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.22 |
gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 0.29 |
gyrA | 8558 | c.1257C>A | synonymous_variant | 0.33 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490600 | c.-183C>T | upstream_gene_variant | 0.18 |
fgd1 | 490602 | c.-181C>T | upstream_gene_variant | 0.18 |
fgd1 | 491233 | p.Asp151Tyr | missense_variant | 0.25 |
mshA | 576220 | c.873C>A | synonymous_variant | 0.15 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.67 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.67 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.67 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.67 |
rpoB | 761075 | c.1269G>A | synonymous_variant | 0.33 |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.29 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.43 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.43 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.33 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.33 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.29 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.25 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.25 |
rpoB | 761198 | c.1392G>C | synonymous_variant | 0.25 |
rpoB | 761258 | c.1452G>A | synonymous_variant | 0.33 |
rpoB | 761834 | c.2028T>C | synonymous_variant | 0.22 |
rpoB | 761848 | p.Cys681Ser | missense_variant | 0.3 |
rpoB | 761852 | c.2046C>G | synonymous_variant | 0.3 |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.27 |
rpoB | 761873 | c.2067A>C | synonymous_variant | 0.27 |
rpoB | 761885 | c.2079T>C | synonymous_variant | 0.27 |
rpoB | 761891 | c.2085G>C | synonymous_variant | 0.3 |
rpoB | 761906 | c.2100C>G | synonymous_variant | 0.33 |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.33 |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.33 |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.33 |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.33 |
rpoB | 761931 | p.Leu709Met | missense_variant | 0.25 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.43 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.43 |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.5 |
rpoB | 762041 | c.2235C>T | synonymous_variant | 0.67 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.67 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.67 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.67 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.5 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.5 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.5 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.4 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.5 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.67 |
rpoB | 762149 | c.2343G>A | synonymous_variant | 0.67 |
rpoB | 762161 | c.2355C>G | synonymous_variant | 0.67 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.67 |
rpoB | 762176 | c.2370T>G | synonymous_variant | 0.67 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.67 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.5 |
rpoB | 762900 | p.Asp1032Tyr | missense_variant | 0.2 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.29 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.33 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.5 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.4 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.33 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.25 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.2 |
rpoC | 763792 | p.Glu141Asp | missense_variant | 0.15 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765229 | p.Met620Ile | missense_variant | 0.25 |
rpoC | 765240 | p.Arg624His | missense_variant | 0.29 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776407 | p.Pro692Ser | missense_variant | 0.22 |
mmpL5 | 776446 | p.Ala679Ser | missense_variant | 0.2 |
mmpL5 | 776467 | p.Asp672Asn | missense_variant | 0.2 |
mmpL5 | 776544 | p.Lys646Met | missense_variant | 0.4 |
mmpL5 | 778265 | p.Met72Ile | missense_variant | 0.67 |
mmpR5 | 778292 | c.-698C>T | upstream_gene_variant | 0.4 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781435 | c.-125G>C | upstream_gene_variant | 1.0 |
rpsL | 781504 | c.-56G>A | upstream_gene_variant | 0.29 |
fbiC | 1303555 | p.Pro209Thr | missense_variant | 0.25 |
fbiC | 1303592 | p.Arg221Leu | missense_variant | 0.22 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.15 |
fbiC | 1303935 | c.1005G>C | synonymous_variant | 0.17 |
fbiC | 1303944 | c.1014G>C | synonymous_variant | 0.17 |
fbiC | 1303947 | c.1017T>C | synonymous_variant | 0.15 |
fbiC | 1303948 | p.Gly340Arg | missense_variant | 0.15 |
fbiC | 1303953 | p.Asp341Glu | missense_variant | 0.15 |
fbiC | 1303961 | p.Arg344Leu | missense_variant | 0.17 |
fbiC | 1303966 | c.1036C>T | synonymous_variant | 0.17 |
fbiC | 1303969 | p.Val347Ile | missense_variant | 0.17 |
fbiC | 1304617 | p.Arg563Trp | missense_variant | 0.22 |
fbiC | 1305143 | p.Glu738Ala | missense_variant | 0.23 |
fbiC | 1305192 | c.2262C>A | synonymous_variant | 0.2 |
fbiC | 1305357 | c.2427C>A | synonymous_variant | 0.25 |
Rv1258c | 1406636 | c.705C>T | synonymous_variant | 0.4 |
embR | 1416545 | p.Thr268Asn | missense_variant | 0.15 |
embR | 1416796 | p.Cys184* | stop_gained | 0.25 |
embR | 1416861 | p.Ala163Thr | missense_variant | 0.22 |
embR | 1417056 | p.Pro98Thr | missense_variant | 0.2 |
atpE | 1461086 | c.42A>G | synonymous_variant | 0.6 |
atpE | 1461101 | c.57T>G | synonymous_variant | 0.5 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471985 | n.140T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472023 | n.178G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472029 | n.184C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472030 | n.185G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472031 | n.186G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472033 | n.188A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472446 | n.601_602insTCTGCAA | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472449 | n.606_612delCGGCTTA | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472459 | n.614C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472463 | n.618G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472497 | n.652G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472836 | n.991G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472840 | n.995A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472841 | n.996G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472859 | n.1014G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472873 | n.1028C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472874 | n.1029C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472875 | n.1030T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472880 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472960 | n.1115G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472986 | n.1141C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473304 | n.1459C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475649 | n.1992A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475655 | n.1998T>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475756 | n.2101_2108delACCCGCAA | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476032 | n.2375C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476033 | n.2376T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476034 | n.2377C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476045 | n.2388G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476046 | n.2389G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476047 | n.2390G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476076 | n.2419A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476079 | n.2422G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476080 | n.2423T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476081 | n.2424A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476082 | n.2425T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476087 | n.2430C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476104 | n.2448delG | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.6 |
fabG1 | 1673407 | c.-33G>T | upstream_gene_variant | 0.5 |
inhA | 1674451 | p.Ala84Ser | missense_variant | 0.18 |
inhA | 1674606 | c.405G>T | synonymous_variant | 0.33 |
inhA | 1674608 | p.Pro136Gln | missense_variant | 0.33 |
rpsA | 1834022 | p.Leu161Met | missense_variant | 0.25 |
rpsA | 1834087 | p.Asn182Lys | missense_variant | 0.2 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.33 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 0.4 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.4 |
rpsA | 1834298 | p.Gln253Ala | missense_variant | 0.4 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.4 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.4 |
rpsA | 1834327 | c.786G>C | synonymous_variant | 0.4 |
rpsA | 1834339 | c.798C>T | synonymous_variant | 0.25 |
rpsA | 1834340 | p.Met267Leu | missense_variant | 0.25 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.25 |
rpsA | 1834354 | c.813G>T | synonymous_variant | 0.25 |
rpsA | 1834357 | c.816T>G | synonymous_variant | 0.25 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.25 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.25 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.33 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.33 |
rpsA | 1834387 | c.846C>T | synonymous_variant | 0.29 |
rpsA | 1834396 | c.855G>T | synonymous_variant | 0.29 |
rpsA | 1834399 | p.His286Gln | missense_variant | 0.25 |
rpsA | 1834408 | c.867C>T | synonymous_variant | 0.25 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.25 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.25 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.29 |
rpsA | 1834478 | p.Val313Phe | missense_variant | 0.4 |
tlyA | 1917791 | c.-149C>T | upstream_gene_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102077 | c.966T>C | synonymous_variant | 0.67 |
ndh | 2102083 | c.960G>T | synonymous_variant | 0.67 |
ndh | 2102103 | p.Tyr314His | missense_variant | 0.67 |
ndh | 2102110 | c.933T>C | synonymous_variant | 0.5 |
ndh | 2102131 | p.Gln304Lys | missense_variant | 0.29 |
ndh | 2102140 | c.903C>G | synonymous_variant | 0.29 |
ndh | 2102155 | c.888G>A | synonymous_variant | 0.29 |
ndh | 2102158 | c.885T>C | synonymous_variant | 0.29 |
ndh | 2102162 | p.Arg294Pro | missense_variant | 0.29 |
ndh | 2102164 | c.879A>G | synonymous_variant | 0.29 |
ndh | 2102167 | c.876A>G | synonymous_variant | 0.29 |
ndh | 2102176 | c.867T>G | synonymous_variant | 0.4 |
ndh | 2102182 | c.859_861delAGGinsCGC | synonymous_variant | 0.4 |
ndh | 2102190 | c.853T>C | synonymous_variant | 0.4 |
ndh | 2102193 | p.Arg284Gly | missense_variant | 0.4 |
ndh | 2102194 | c.849T>C | synonymous_variant | 0.4 |
ndh | 2102201 | p.Ser281Gln | missense_variant | 0.4 |
ndh | 2102203 | c.840T>G | synonymous_variant | 0.4 |
ndh | 2102212 | c.831G>C | synonymous_variant | 0.4 |
ndh | 2102233 | c.810G>A | synonymous_variant | 0.4 |
katG | 2155428 | c.684C>A | synonymous_variant | 0.15 |
katG | 2155830 | c.282C>T | synonymous_variant | 0.14 |
PPE35 | 2170602 | p.Ser4Leu | missense_variant | 0.29 |
PPE35 | 2170668 | c.-56A>T | upstream_gene_variant | 0.4 |
PPE35 | 2170687 | c.-75C>T | upstream_gene_variant | 0.33 |
Rv1979c | 2221754 | p.Ile471Phe | missense_variant | 0.4 |
Rv1979c | 2221784 | p.Ala461Thr | missense_variant | 1.0 |
Rv1979c | 2223198 | c.-34G>A | upstream_gene_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289161 | c.81G>T | synonymous_variant | 0.17 |
pncA | 2289706 | c.-465C>T | upstream_gene_variant | 0.25 |
pncA | 2290236 | c.-995G>T | upstream_gene_variant | 0.29 |
kasA | 2518507 | c.393G>T | synonymous_variant | 0.5 |
kasA | 2518510 | c.396C>T | synonymous_variant | 0.4 |
kasA | 2518642 | c.528A>G | synonymous_variant | 0.14 |
kasA | 2518645 | c.531G>C | synonymous_variant | 0.15 |
kasA | 2518651 | c.537C>G | synonymous_variant | 0.15 |
kasA | 2518657 | c.543G>A | synonymous_variant | 0.15 |
kasA | 2518663 | c.549T>C | synonymous_variant | 0.17 |
kasA | 2518705 | c.591T>C | synonymous_variant | 0.19 |
kasA | 2518708 | c.594C>G | synonymous_variant | 0.2 |
kasA | 2518711 | c.597A>G | synonymous_variant | 0.21 |
kasA | 2518714 | c.600A>C | synonymous_variant | 0.21 |
kasA | 2518736 | p.Ala208Ser | missense_variant | 0.15 |
kasA | 2518747 | c.633C>G | synonymous_variant | 0.3 |
kasA | 2518756 | c.642G>T | synonymous_variant | 0.25 |
kasA | 2518887 | p.Gly258Val | missense_variant | 0.25 |
kasA | 2518969 | c.856_857delCG | frameshift_variant | 0.2 |
kasA | 2519323 | c.1209G>T | synonymous_variant | 0.33 |
eis | 2714202 | c.1131C>T | synonymous_variant | 0.33 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.5 |
ahpC | 2726648 | c.456T>C | synonymous_variant | 0.2 |
folC | 2746221 | p.Ala460Thr | missense_variant | 0.18 |
folC | 2746276 | p.Asp441Glu | missense_variant | 0.14 |
folC | 2747250 | p.Pro117Thr | missense_variant | 0.22 |
pepQ | 2859440 | p.Gly327Cys | missense_variant | 0.29 |
pepQ | 2859826 | p.Ala198Gly | missense_variant | 0.13 |
pepQ | 2860256 | p.Ala55Ser | missense_variant | 0.17 |
pepQ | 2860577 | c.-159C>G | upstream_gene_variant | 0.4 |
ribD | 2987262 | p.Val142Met | missense_variant | 0.17 |
Rv2752c | 3065523 | p.His223Gln | missense_variant | 0.4 |
thyX | 3067772 | c.174C>A | synonymous_variant | 0.29 |
thyX | 3068016 | c.-71C>T | upstream_gene_variant | 0.18 |
thyA | 3074648 | c.-177T>G | upstream_gene_variant | 0.5 |
fprA | 3473952 | c.-55C>A | upstream_gene_variant | 0.4 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474768 | c.762C>A | synonymous_variant | 0.22 |
whiB7 | 3568489 | p.Gly64Val | missense_variant | 0.33 |
Rv3236c | 3612750 | p.Gly123Trp | missense_variant | 0.2 |
Rv3236c | 3612768 | p.Ala117Ser | missense_variant | 0.2 |
fbiA | 3640855 | p.Gly105Arg | missense_variant | 0.5 |
fbiB | 3641726 | c.192C>A | synonymous_variant | 0.18 |
alr | 3840763 | p.Ala220Ser | missense_variant | 0.25 |
rpoA | 3877897 | p.Pro204Gln | missense_variant | 0.2 |
clpC1 | 4038562 | p.Asp715Asn | missense_variant | 1.0 |
clpC1 | 4038570 | p.Arg712His | missense_variant | 1.0 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.67 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 1.0 |
clpC1 | 4039271 | p.Glu478Asp | missense_variant | 0.5 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.15 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.18 |
embC | 4241089 | c.1227C>A | synonymous_variant | 0.22 |
embC | 4241116 | c.1254C>T | synonymous_variant | 0.18 |
embC | 4241254 | c.1392C>A | synonymous_variant | 0.17 |
embC | 4241473 | c.1611G>A | synonymous_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4246142 | p.Leu970Phe | missense_variant | 0.67 |
embB | 4248499 | c.1986G>A | synonymous_variant | 0.2 |
embB | 4248940 | c.2427C>T | synonymous_variant | 0.4 |
embB | 4249130 | p.Pro873Thr | missense_variant | 0.5 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
aftB | 4267436 | c.1401G>T | synonymous_variant | 0.33 |
aftB | 4268837 | c.-1C>A | upstream_gene_variant | 0.22 |
ubiA | 4269514 | p.Val107Gly | missense_variant | 0.44 |
ethA | 4326963 | p.Leu171Phe | missense_variant | 0.4 |
ethA | 4327538 | c.-65T>A | upstream_gene_variant | 0.4 |
ethA | 4328342 | c.-869G>T | upstream_gene_variant | 0.17 |
whiB6 | 4338267 | c.255C>T | synonymous_variant | 0.17 |
whiB6 | 4338369 | c.153C>A | synonymous_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407798 | c.405G>T | synonymous_variant | 1.0 |
gid | 4408391 | c.-189G>T | upstream_gene_variant | 0.25 |