TB-Profiler result

Run: ERR1750908
Summary

Run ID: ERR1750908

Sample name:

Date: 31-03-2023 14:59:31

Number of reads: 724357

Percentage reads mapped: 83.4

Strain: lineage4

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7601 c.300C>G synonymous_variant 0.15
gyrA 7607 c.306C>G synonymous_variant 0.17
gyrA 7619 c.318C>G synonymous_variant 0.2
gyrA 7628 c.327G>C synonymous_variant 0.22
gyrA 7631 c.330G>C synonymous_variant 0.22
gyrA 7637 c.336C>G synonymous_variant 0.22
gyrA 7652 c.351C>T synonymous_variant 0.2
gyrA 7658 c.357A>G synonymous_variant 0.2
gyrA 7664 c.363T>C synonymous_variant 0.2
gyrA 7670 c.369A>G synonymous_variant 0.2
gyrA 7688 c.387C>T synonymous_variant 0.2
gyrA 7694 c.393A>G synonymous_variant 0.2
gyrA 7697 c.396C>G synonymous_variant 0.22
gyrA 7703 c.402G>C synonymous_variant 0.22
gyrA 7710 c.409T>C synonymous_variant 0.22
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 0.29
gyrA 8558 c.1257C>A synonymous_variant 0.33
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 490600 c.-183C>T upstream_gene_variant 0.18
fgd1 490602 c.-181C>T upstream_gene_variant 0.18
fgd1 491233 p.Asp151Tyr missense_variant 0.25
mshA 576220 c.873C>A synonymous_variant 0.15
rpoB 761036 c.1230G>C synonymous_variant 0.67
rpoB 761037 c.1231T>C synonymous_variant 0.67
rpoB 761054 c.1248G>C synonymous_variant 0.67
rpoB 761057 c.1251G>C synonymous_variant 0.67
rpoB 761075 c.1269G>A synonymous_variant 0.33
rpoB 761084 c.1278C>A synonymous_variant 0.29
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.43
rpoB 761102 c.1296A>G synonymous_variant 0.43
rpoB 761132 c.1326G>T synonymous_variant 0.33
rpoB 761133 c.1327T>C synonymous_variant 0.33
rpoB 761165 c.1359G>C synonymous_variant 0.29
rpoB 761189 c.1383T>C synonymous_variant 0.25
rpoB 761195 c.1389G>C synonymous_variant 0.25
rpoB 761198 c.1392G>C synonymous_variant 0.25
rpoB 761258 c.1452G>A synonymous_variant 0.33
rpoB 761834 c.2028T>C synonymous_variant 0.22
rpoB 761848 p.Cys681Ser missense_variant 0.3
rpoB 761852 c.2046C>G synonymous_variant 0.3
rpoB 761858 c.2052G>C synonymous_variant 0.27
rpoB 761873 c.2067A>C synonymous_variant 0.27
rpoB 761885 c.2079T>C synonymous_variant 0.27
rpoB 761891 c.2085G>C synonymous_variant 0.3
rpoB 761906 c.2100C>G synonymous_variant 0.33
rpoB 761909 c.2103T>C synonymous_variant 0.33
rpoB 761912 c.2106T>C synonymous_variant 0.33
rpoB 761915 p.Asp703Glu missense_variant 0.33
rpoB 761916 p.Asp704Asn missense_variant 0.33
rpoB 761931 p.Leu709Met missense_variant 0.25
rpoB 761948 c.2142G>C synonymous_variant 0.43
rpoB 761954 c.2148C>G synonymous_variant 0.43
rpoB 761999 c.2193G>C synonymous_variant 0.5
rpoB 762041 c.2235C>T synonymous_variant 0.67
rpoB 762053 c.2247T>C synonymous_variant 0.67
rpoB 762062 c.2256T>C synonymous_variant 0.67
rpoB 762065 c.2259T>C synonymous_variant 0.67
rpoB 762083 c.2277T>C synonymous_variant 0.5
rpoB 762086 c.2280G>C synonymous_variant 0.5
rpoB 762101 c.2295C>G synonymous_variant 0.5
rpoB 762114 p.Ile770Val missense_variant 0.4
rpoB 762131 c.2325C>G synonymous_variant 0.5
rpoB 762143 c.2337T>C synonymous_variant 0.67
rpoB 762149 c.2343G>A synonymous_variant 0.67
rpoB 762161 c.2355C>G synonymous_variant 0.67
rpoB 762167 c.2361T>C synonymous_variant 0.67
rpoB 762176 c.2370T>G synonymous_variant 0.67
rpoB 762185 c.2379G>C synonymous_variant 0.67
rpoB 762233 c.2427G>C synonymous_variant 0.5
rpoB 762900 p.Asp1032Tyr missense_variant 0.2
rpoC 763642 c.273G>C synonymous_variant 0.29
rpoC 763666 c.297G>C synonymous_variant 0.33
rpoC 763717 c.348T>C synonymous_variant 0.5
rpoC 763723 c.354G>C synonymous_variant 0.4
rpoC 763732 c.363C>G synonymous_variant 0.33
rpoC 763744 c.375G>C synonymous_variant 0.25
rpoC 763765 c.396T>C synonymous_variant 0.2
rpoC 763792 p.Glu141Asp missense_variant 0.15
rpoC 765150 p.Gly594Glu missense_variant 1.0
rpoC 765229 p.Met620Ile missense_variant 0.25
rpoC 765240 p.Arg624His missense_variant 0.29
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776407 p.Pro692Ser missense_variant 0.22
mmpL5 776446 p.Ala679Ser missense_variant 0.2
mmpL5 776467 p.Asp672Asn missense_variant 0.2
mmpL5 776544 p.Lys646Met missense_variant 0.4
mmpL5 778265 p.Met72Ile missense_variant 0.67
mmpR5 778292 c.-698C>T upstream_gene_variant 0.4
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781435 c.-125G>C upstream_gene_variant 1.0
rpsL 781504 c.-56G>A upstream_gene_variant 0.29
fbiC 1303555 p.Pro209Thr missense_variant 0.25
fbiC 1303592 p.Arg221Leu missense_variant 0.22
fbiC 1303914 c.984C>G synonymous_variant 0.15
fbiC 1303935 c.1005G>C synonymous_variant 0.17
fbiC 1303944 c.1014G>C synonymous_variant 0.17
fbiC 1303947 c.1017T>C synonymous_variant 0.15
fbiC 1303948 p.Gly340Arg missense_variant 0.15
fbiC 1303953 p.Asp341Glu missense_variant 0.15
fbiC 1303961 p.Arg344Leu missense_variant 0.17
fbiC 1303966 c.1036C>T synonymous_variant 0.17
fbiC 1303969 p.Val347Ile missense_variant 0.17
fbiC 1304617 p.Arg563Trp missense_variant 0.22
fbiC 1305143 p.Glu738Ala missense_variant 0.23
fbiC 1305192 c.2262C>A synonymous_variant 0.2
fbiC 1305357 c.2427C>A synonymous_variant 0.25
Rv1258c 1406636 c.705C>T synonymous_variant 0.4
embR 1416545 p.Thr268Asn missense_variant 0.15
embR 1416796 p.Cys184* stop_gained 0.25
embR 1416861 p.Ala163Thr missense_variant 0.22
embR 1417056 p.Pro98Thr missense_variant 0.2
atpE 1461086 c.42A>G synonymous_variant 0.6
atpE 1461101 c.57T>G synonymous_variant 0.5
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.67
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.67
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 1.0
rrs 1472029 n.184C>A non_coding_transcript_exon_variant 1.0
rrs 1472030 n.185G>C non_coding_transcript_exon_variant 1.0
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 1.0
rrs 1472033 n.188A>T non_coding_transcript_exon_variant 1.0
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.67
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.67
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.5
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.5
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.5
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.5
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.5
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.67
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.67
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.8
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.8
rrs 1472446 n.601_602insTCTGCAA non_coding_transcript_exon_variant 0.8
rrs 1472449 n.606_612delCGGCTTA non_coding_transcript_exon_variant 0.8
rrs 1472459 n.614C>T non_coding_transcript_exon_variant 0.8
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.8
rrs 1472463 n.618G>A non_coding_transcript_exon_variant 0.8
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.8
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.8
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.8
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 0.8
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.8
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 1.0
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 1.0
rrs 1472841 n.996G>A non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 1.0
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 1.0
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 1.0
rrs 1472960 n.1115G>A non_coding_transcript_exon_variant 1.0
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 1.0
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 1.0
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 1.0
rrs 1472986 n.1141C>T non_coding_transcript_exon_variant 1.0
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.67
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.67
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.67
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.67
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.67
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.67
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.67
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.5
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.5
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473304 n.1459C>A non_coding_transcript_exon_variant 0.29
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.5
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.67
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.67
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.67
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.43
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.43
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.43
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.38
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.38
rrl 1475756 n.2101_2108delACCCGCAA non_coding_transcript_exon_variant 0.33
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.5
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.5
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.67
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.75
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.75
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.67
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.5
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.5
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.4
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.4
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.4
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.4
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.33
rrl 1476046 n.2389G>C non_coding_transcript_exon_variant 0.33
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.33
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.33
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.29
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 0.29
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 0.25
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 0.25
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 0.25
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.38
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.25
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.29
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.29
rrl 1476104 n.2448delG non_coding_transcript_exon_variant 0.29
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.25
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.25
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.25
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.6
fabG1 1673407 c.-33G>T upstream_gene_variant 0.5
inhA 1674451 p.Ala84Ser missense_variant 0.18
inhA 1674606 c.405G>T synonymous_variant 0.33
inhA 1674608 p.Pro136Gln missense_variant 0.33
rpsA 1834022 p.Leu161Met missense_variant 0.25
rpsA 1834087 p.Asn182Lys missense_variant 0.2
rpsA 1834264 c.723G>C synonymous_variant 0.33
rpsA 1834279 c.738C>T synonymous_variant 0.4
rpsA 1834294 c.753G>C synonymous_variant 0.4
rpsA 1834298 p.Gln253Ala missense_variant 0.4
rpsA 1834303 c.762T>C synonymous_variant 0.4
rpsA 1834306 c.765T>C synonymous_variant 0.4
rpsA 1834327 c.786G>C synonymous_variant 0.4
rpsA 1834339 c.798C>T synonymous_variant 0.25
rpsA 1834340 p.Met267Leu missense_variant 0.25
rpsA 1834348 c.807T>C synonymous_variant 0.25
rpsA 1834354 c.813G>T synonymous_variant 0.25
rpsA 1834357 c.816T>G synonymous_variant 0.25
rpsA 1834361 c.820T>C synonymous_variant 0.25
rpsA 1834366 c.825A>G synonymous_variant 0.25
rpsA 1834375 c.834G>A synonymous_variant 0.33
rpsA 1834378 c.837T>C synonymous_variant 0.33
rpsA 1834387 c.846C>T synonymous_variant 0.29
rpsA 1834396 c.855G>T synonymous_variant 0.29
rpsA 1834399 p.His286Gln missense_variant 0.25
rpsA 1834408 c.867C>T synonymous_variant 0.25
rpsA 1834411 c.870T>C synonymous_variant 0.25
rpsA 1834417 c.876G>C synonymous_variant 0.25
rpsA 1834423 c.882G>C synonymous_variant 0.29
rpsA 1834478 p.Val313Phe missense_variant 0.4
tlyA 1917791 c.-149C>T upstream_gene_variant 0.25
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102077 c.966T>C synonymous_variant 0.67
ndh 2102083 c.960G>T synonymous_variant 0.67
ndh 2102103 p.Tyr314His missense_variant 0.67
ndh 2102110 c.933T>C synonymous_variant 0.5
ndh 2102131 p.Gln304Lys missense_variant 0.29
ndh 2102140 c.903C>G synonymous_variant 0.29
ndh 2102155 c.888G>A synonymous_variant 0.29
ndh 2102158 c.885T>C synonymous_variant 0.29
ndh 2102162 p.Arg294Pro missense_variant 0.29
ndh 2102164 c.879A>G synonymous_variant 0.29
ndh 2102167 c.876A>G synonymous_variant 0.29
ndh 2102176 c.867T>G synonymous_variant 0.4
ndh 2102182 c.859_861delAGGinsCGC synonymous_variant 0.4
ndh 2102190 c.853T>C synonymous_variant 0.4
ndh 2102193 p.Arg284Gly missense_variant 0.4
ndh 2102194 c.849T>C synonymous_variant 0.4
ndh 2102201 p.Ser281Gln missense_variant 0.4
ndh 2102203 c.840T>G synonymous_variant 0.4
ndh 2102212 c.831G>C synonymous_variant 0.4
ndh 2102233 c.810G>A synonymous_variant 0.4
katG 2155428 c.684C>A synonymous_variant 0.15
katG 2155830 c.282C>T synonymous_variant 0.14
PPE35 2170602 p.Ser4Leu missense_variant 0.29
PPE35 2170668 c.-56A>T upstream_gene_variant 0.4
PPE35 2170687 c.-75C>T upstream_gene_variant 0.33
Rv1979c 2221754 p.Ile471Phe missense_variant 0.4
Rv1979c 2221784 p.Ala461Thr missense_variant 1.0
Rv1979c 2223198 c.-34G>A upstream_gene_variant 0.33
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289161 c.81G>T synonymous_variant 0.17
pncA 2289706 c.-465C>T upstream_gene_variant 0.25
pncA 2290236 c.-995G>T upstream_gene_variant 0.29
kasA 2518507 c.393G>T synonymous_variant 0.5
kasA 2518510 c.396C>T synonymous_variant 0.4
kasA 2518642 c.528A>G synonymous_variant 0.14
kasA 2518645 c.531G>C synonymous_variant 0.15
kasA 2518651 c.537C>G synonymous_variant 0.15
kasA 2518657 c.543G>A synonymous_variant 0.15
kasA 2518663 c.549T>C synonymous_variant 0.17
kasA 2518705 c.591T>C synonymous_variant 0.19
kasA 2518708 c.594C>G synonymous_variant 0.2
kasA 2518711 c.597A>G synonymous_variant 0.21
kasA 2518714 c.600A>C synonymous_variant 0.21
kasA 2518736 p.Ala208Ser missense_variant 0.15
kasA 2518747 c.633C>G synonymous_variant 0.3
kasA 2518756 c.642G>T synonymous_variant 0.25
kasA 2518887 p.Gly258Val missense_variant 0.25
kasA 2518969 c.856_857delCG frameshift_variant 0.2
kasA 2519323 c.1209G>T synonymous_variant 0.33
eis 2714202 c.1131C>T synonymous_variant 0.33
ahpC 2726338 p.Val49Gly missense_variant 0.5
ahpC 2726648 c.456T>C synonymous_variant 0.2
folC 2746221 p.Ala460Thr missense_variant 0.18
folC 2746276 p.Asp441Glu missense_variant 0.14
folC 2747250 p.Pro117Thr missense_variant 0.22
pepQ 2859440 p.Gly327Cys missense_variant 0.29
pepQ 2859826 p.Ala198Gly missense_variant 0.13
pepQ 2860256 p.Ala55Ser missense_variant 0.17
pepQ 2860577 c.-159C>G upstream_gene_variant 0.4
ribD 2987262 p.Val142Met missense_variant 0.17
Rv2752c 3065523 p.His223Gln missense_variant 0.4
thyX 3067772 c.174C>A synonymous_variant 0.29
thyX 3068016 c.-71C>T upstream_gene_variant 0.18
thyA 3074648 c.-177T>G upstream_gene_variant 0.5
fprA 3473952 c.-55C>A upstream_gene_variant 0.4
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474768 c.762C>A synonymous_variant 0.22
whiB7 3568489 p.Gly64Val missense_variant 0.33
Rv3236c 3612750 p.Gly123Trp missense_variant 0.2
Rv3236c 3612768 p.Ala117Ser missense_variant 0.2
fbiA 3640855 p.Gly105Arg missense_variant 0.5
fbiB 3641726 c.192C>A synonymous_variant 0.18
alr 3840763 p.Ala220Ser missense_variant 0.25
rpoA 3877897 p.Pro204Gln missense_variant 0.2
clpC1 4038562 p.Asp715Asn missense_variant 1.0
clpC1 4038570 p.Arg712His missense_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 0.67
clpC1 4038923 c.1782A>G synonymous_variant 1.0
clpC1 4039271 p.Glu478Asp missense_variant 0.5
clpC1 4039517 c.1188C>G synonymous_variant 0.15
clpC1 4039553 c.1152C>G synonymous_variant 0.18
embC 4241089 c.1227C>A synonymous_variant 0.22
embC 4241116 c.1254C>T synonymous_variant 0.18
embC 4241254 c.1392C>A synonymous_variant 0.17
embC 4241473 c.1611G>A synonymous_variant 0.17
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embA 4246142 p.Leu970Phe missense_variant 0.67
embB 4248499 c.1986G>A synonymous_variant 0.2
embB 4248940 c.2427C>T synonymous_variant 0.4
embB 4249130 p.Pro873Thr missense_variant 0.5
embB 4249408 c.2895G>A synonymous_variant 1.0
aftB 4267436 c.1401G>T synonymous_variant 0.33
aftB 4268837 c.-1C>A upstream_gene_variant 0.22
ubiA 4269514 p.Val107Gly missense_variant 0.44
ethA 4326963 p.Leu171Phe missense_variant 0.4
ethA 4327538 c.-65T>A upstream_gene_variant 0.4
ethA 4328342 c.-869G>T upstream_gene_variant 0.17
whiB6 4338267 c.255C>T synonymous_variant 0.17
whiB6 4338369 c.153C>A synonymous_variant 0.17
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407798 c.405G>T synonymous_variant 1.0
gid 4408391 c.-189G>T upstream_gene_variant 0.25