Run ID: ERR1949965
Sample name:
Date: 31-03-2023 15:35:51
Number of reads: 1154099
Percentage reads mapped: 99.34
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6165 | p.Asn309Thr | missense_variant | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8774 | c.1473C>T | synonymous_variant | 0.15 |
fgd1 | 491173 | p.Arg131Gly | missense_variant | 0.14 |
fgd1 | 491315 | p.Gly178Ala | missense_variant | 0.33 |
fgd1 | 491414 | p.Val211Glu | missense_variant | 0.29 |
ccsA | 619738 | c.-153T>G | upstream_gene_variant | 0.19 |
ccsA | 619821 | c.-70T>C | upstream_gene_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776359 | p.Phe708Ile | missense_variant | 0.25 |
mmpS5 | 778577 | p.Thr110Ser | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304033 | p.Glu368Gly | missense_variant | 0.12 |
Rv1258c | 1407066 | p.Val92Gly | missense_variant | 0.2 |
Rv1258c | 1407472 | c.-132T>G | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472898 | n.1053T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473888 | n.231T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474017 | n.360A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169685 | p.Gly310Arg | missense_variant | 0.12 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.23 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.13 |
Rv1979c | 2222923 | p.Tyr81Cys | missense_variant | 0.11 |
Rv1979c | 2223075 | c.90C>T | synonymous_variant | 0.22 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518695 | p.Val194Gly | missense_variant | 0.2 |
ahpC | 2726428 | p.Asp79Ala | missense_variant | 0.17 |
pepQ | 2859904 | p.Val172Gly | missense_variant | 0.13 |
Rv2752c | 3065752 | p.Asn147Ser | missense_variant | 0.22 |
Rv2752c | 3067069 | c.-878T>A | upstream_gene_variant | 0.18 |
thyX | 3068151 | c.-206T>G | upstream_gene_variant | 0.17 |
fprA | 3475134 | c.1128A>G | synonymous_variant | 0.12 |
Rv3236c | 3612568 | c.549G>A | synonymous_variant | 0.33 |
fbiA | 3641444 | p.Val301Gly | missense_variant | 0.19 |
fbiB | 3642505 | p.Asp324Ala | missense_variant | 0.29 |
rpoA | 3878496 | c.12A>C | synonymous_variant | 0.13 |
clpC1 | 4039567 | p.Val380Leu | missense_variant | 0.47 |
embC | 4240581 | p.Leu240Arg | missense_variant | 0.31 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.15 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.18 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.17 |
embB | 4249677 | p.Arg1055Leu | missense_variant | 0.17 |
ethR | 4328104 | p.Ser186Ala | missense_variant | 0.19 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |