Run ID: ERR1950049
Sample name:
Date: 31-03-2023 15:38:25
Number of reads: 891358
Percentage reads mapped: 99.26
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6270 | p.Asn344Thr | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 760686 | p.Phe294Ile | missense_variant | 0.11 |
rpoB | 762930 | p.Pro1042Ser | missense_variant | 0.1 |
rpoC | 764065 | p.Lys232Asn | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
Rv1258c | 1406383 | p.Val320Met | missense_variant | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674383 | p.Leu61Pro | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155453 | p.Leu220Pro | missense_variant | 0.11 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.25 |
PPE35 | 2169071 | c.1542A>T | synonymous_variant | 0.25 |
PPE35 | 2169144 | p.Val490Glu | missense_variant | 0.27 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289369 | c.-128C>A | upstream_gene_variant | 0.12 |
pncA | 2290183 | c.-942T>C | upstream_gene_variant | 0.11 |
kasA | 2519187 | p.Thr358Met | missense_variant | 0.14 |
Rv2752c | 3065421 | c.771G>T | synonymous_variant | 0.22 |
ald | 3086938 | p.Gly40Glu | missense_variant | 0.1 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fprA | 3475190 | p.Cys395Tyr | missense_variant | 0.14 |
fbiB | 3641607 | p.Pro25Thr | missense_variant | 0.13 |
embC | 4241564 | p.Ile568Val | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242655 | c.-578A>G | upstream_gene_variant | 0.22 |
embA | 4244184 | p.Ser318Leu | missense_variant | 0.12 |
embA | 4244257 | p.Phe342Tyr | missense_variant | 0.12 |
aftB | 4267832 | c.1005C>T | synonymous_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-3_*1408del | transcript_ablation | 1.0 |