Run ID: ERR2228948
Sample name:
Date: 31-03-2023 16:27:38
Number of reads: 1012551
Percentage reads mapped: 99.42
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
ccsA | 619805 | c.-86C>A | upstream_gene_variant | 0.15 |
ccsA | 620625 | c.735A>T | synonymous_variant | 0.22 |
rpoB | 761197 | p.Leu464Arg | missense_variant | 0.23 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777119 | p.His454Gln | missense_variant | 0.14 |
mmpL5 | 777128 | c.1353A>G | synonymous_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1303985 | p.Asp352Gly | missense_variant | 0.14 |
Rv1258c | 1406178 | p.Val388Glu | missense_variant | 0.18 |
atpE | 1460955 | c.-90T>A | upstream_gene_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155191 | c.921A>C | synonymous_variant | 0.11 |
katG | 2155321 | p.Ala264Val | missense_variant | 0.11 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 0.97 |
PPE35 | 2169029 | p.Asp528Glu | missense_variant | 0.17 |
PPE35 | 2169269 | c.1344A>G | synonymous_variant | 0.12 |
PPE35 | 2169272 | c.1341C>G | synonymous_variant | 0.12 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.1 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.1 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.32 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.36 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290163 | c.-922T>A | upstream_gene_variant | 0.2 |
pepQ | 2859956 | p.Thr155Pro | missense_variant | 0.27 |
Rv2752c | 3064528 | p.Val555Gly | missense_variant | 0.17 |
thyX | 3067540 | p.Ala136Thr | missense_variant | 0.22 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fbiB | 3642121 | p.Asp196Ala | missense_variant | 0.22 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.14 |
rpoA | 3878490 | c.18C>G | synonymous_variant | 0.3 |
embC | 4241597 | p.Met579Leu | missense_variant | 0.2 |
embC | 4241854 | c.1992A>G | synonymous_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244197 | p.Val322Gly | missense_variant | 0.17 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.21 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.15 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.15 |
embB | 4247039 | p.Phe176Val | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |