TB-Profiler result

Run: ERR2229059
Summary

Run ID: ERR2229059

Sample name:

Date: 18-08-2022 11:03:09

Number of reads: 407390

Percentage reads mapped: 99.35

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7300 c.-2A>G upstream_gene_variant 0.2
embR 1417256 p.Gly31Asp missense_variant 0.14
katG 2156060 p.Asn18Asp missense_variant 0.2