Run ID: ERR2229095
Sample name:
Date: 31-03-2023 16:38:14
Number of reads: 535084
Percentage reads mapped: 99.37
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 490892 | p.Val37Ala | missense_variant | 0.12 |
mshA | 575409 | p.Gly21Val | missense_variant | 0.22 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.33 |
rpoB | 762474 | p.Gly890Cys | missense_variant | 0.13 |
rpoB | 762856 | p.Val1017Asp | missense_variant | 0.18 |
rpoC | 763220 | c.-150G>C | upstream_gene_variant | 0.11 |
rpoB | 763222 | p.Ile1139Thr | missense_variant | 0.11 |
rpoC | 765525 | p.Ala719Val | missense_variant | 0.22 |
rpoC | 767002 | c.3633G>T | synonymous_variant | 0.5 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776179 | c.2302T>C | synonymous_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1416506 | p.Thr281Ile | missense_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.14 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.23 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.23 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.23 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.45 |
inhA | 1673791 | c.-411C>A | upstream_gene_variant | 0.25 |
rpsA | 1834641 | p.Glu367Val | missense_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101680 | p.Ser455Pro | missense_variant | 0.11 |
ndh | 2102327 | p.Leu239Pro | missense_variant | 0.29 |
ndh | 2102373 | p.Met224Leu | missense_variant | 0.4 |
ndh | 2102460 | p.His195Asp | missense_variant | 0.2 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.18 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.18 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.22 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.29 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.31 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.11 |
Rv1979c | 2221997 | p.Pro390Ser | missense_variant | 0.15 |
Rv1979c | 2222478 | p.Leu229Phe | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289177 | p.Thr22Asn | missense_variant | 0.25 |
kasA | 2518491 | p.Tyr126Cys | missense_variant | 0.15 |
thyX | 3067340 | c.606G>A | synonymous_variant | 0.27 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612086 | p.Ala344Val | missense_variant | 0.11 |
fbiA | 3640354 | c.-189C>A | upstream_gene_variant | 0.13 |
fbiB | 3642096 | p.Val188Met | missense_variant | 0.22 |
rpoA | 3878049 | c.459G>T | synonymous_variant | 0.33 |
rpoA | 3878599 | c.-92C>G | upstream_gene_variant | 1.0 |
ddn | 3987252 | c.410delA | frameshift_variant | 0.11 |
clpC1 | 4038748 | p.Arg653Gly | missense_variant | 0.12 |
embC | 4241896 | c.2036delT | frameshift_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246567 | c.54_55insT | frameshift_variant | 0.5 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
embB | 4246837 | p.Asp108Glu | missense_variant | 0.22 |
embB | 4247438 | p.Val309Phe | missense_variant | 0.17 |
embB | 4247976 | p.Val488Ala | missense_variant | 0.11 |
embB | 4249361 | p.Ala950Thr | missense_variant | 0.17 |
aftB | 4267895 | p.Phe314Leu | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |