Run ID: ERR2229164
Sample name:
Date: 31-03-2023 16:46:30
Number of reads: 975358
Percentage reads mapped: 99.11
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6623 | p.Ser462Thr | missense_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576499 | c.1152G>T | synonymous_variant | 0.12 |
rpoB | 759753 | c.-54C>T | upstream_gene_variant | 0.12 |
rpoB | 760919 | c.1113C>A | synonymous_variant | 0.13 |
rpoB | 762745 | p.Gln980Arg | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776218 | p.Ala755Ser | missense_variant | 0.15 |
mmpL5 | 777164 | c.1317C>T | synonymous_variant | 0.14 |
mmpL5 | 778414 | p.Phe23Leu | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801152 | p.Thr115Met | missense_variant | 0.25 |
fbiC | 1303523 | p.Trp198Leu | missense_variant | 0.11 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1303784 | p.Gly285Glu | missense_variant | 0.14 |
fbiC | 1304491 | c.1561_1562insGT | frameshift_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474459 | n.802C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474975 | n.1318G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476004 | n.2347G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476692 | n.3037delG | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167709 | c.2904C>T | synonymous_variant | 0.15 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169049 | p.Ile522Phe | missense_variant | 0.25 |
PPE35 | 2169890 | c.723C>T | synonymous_variant | 0.17 |
PPE35 | 2169893 | c.720C>A | synonymous_variant | 0.17 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.19 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.21 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.35 |
Rv1979c | 2222199 | c.966T>C | synonymous_variant | 0.13 |
Rv1979c | 2223101 | p.Leu22Ile | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.16 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.27 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.27 |
folC | 2746141 | c.1457dupC | frameshift_variant | 0.14 |
thyX | 3067340 | c.606G>A | synonymous_variant | 0.12 |
thyA | 3074418 | c.54A>G | synonymous_variant | 0.1 |
thyA | 3074603 | c.-132G>A | upstream_gene_variant | 0.12 |
whiB7 | 3568557 | c.123A>G | synonymous_variant | 0.1 |
rpoA | 3877699 | p.His270Arg | missense_variant | 0.13 |
rpoA | 3877824 | p.Glu228Asp | missense_variant | 0.12 |
rpoA | 3878483 | c.25C>T | synonymous_variant | 0.15 |
panD | 4044183 | p.Met33Ile | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243704 | p.Gly158Ser | missense_variant | 0.12 |
embA | 4244565 | p.Arg445Cys | missense_variant | 0.13 |
embA | 4244835 | c.1603C>T | synonymous_variant | 0.22 |
embA | 4245048 | p.Tyr606His | missense_variant | 0.11 |
embA | 4245994 | p.Ala921Glu | missense_variant | 0.15 |
embB | 4246203 | c.-311C>A | upstream_gene_variant | 0.15 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.18 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.18 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.2 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.17 |
embB | 4246721 | p.Pro70Thr | missense_variant | 0.12 |
embB | 4248629 | p.Pro706Thr | missense_variant | 0.14 |
aftB | 4268091 | p.Lys249Arg | missense_variant | 0.12 |
ethA | 4327310 | p.Ser55Tyr | missense_variant | 0.15 |
ethA | 4327926 | c.-453G>A | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |