Run ID: ERR2229206
Sample name:
Date: 31-03-2023 16:48:31
Number of reads: 1132178
Percentage reads mapped: 99.43
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491229 | c.450delT | frameshift_variant | 0.17 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.22 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.25 |
mshA | 576349 | c.1002G>T | synonymous_variant | 0.14 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.17 |
mshA | 576483 | p.Val379Gly | missense_variant | 0.29 |
rpoB | 761654 | p.Glu616Asp | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775785 | p.Glu899Gly | missense_variant | 0.13 |
mmpL5 | 777191 | c.1290C>A | synonymous_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781899 | p.Arg114Ser | missense_variant | 0.14 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304960 | p.Arg677Leu | missense_variant | 0.12 |
Rv1258c | 1407033 | p.Val103Ala | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475150 | n.1493C>A | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834492 | c.951C>A | synonymous_variant | 0.13 |
rpsA | 1834499 | p.Leu320Met | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167865 | c.2748G>C | synonymous_variant | 0.12 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.12 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.15 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.15 |
PPE35 | 2168215 | p.Thr800Ala | missense_variant | 0.14 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.2 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.33 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.19 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519128 | c.1014G>C | synonymous_variant | 0.17 |
kasA | 2519131 | c.1017G>C | synonymous_variant | 0.15 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.17 |
folC | 2746433 | p.Gly389Asp | missense_variant | 0.18 |
folC | 2746636 | c.963C>A | synonymous_variant | 0.25 |
pepQ | 2859651 | c.768G>T | synonymous_variant | 0.13 |
pepQ | 2859969 | c.450C>A | synonymous_variant | 0.12 |
thyA | 3074150 | p.His108Asn | missense_variant | 0.12 |
ald | 3087895 | c.1080_1081delGG | frameshift_variant | 0.17 |
fbiD | 3339208 | p.Ser31Pro | missense_variant | 0.12 |
fbiD | 3339745 | p.Ala210Ser | missense_variant | 0.18 |
fbiB | 3641892 | p.Leu120Met | missense_variant | 0.15 |
fbiB | 3642548 | c.1014C>A | synonymous_variant | 0.18 |
fbiB | 3642597 | p.Asp355Tyr | missense_variant | 0.15 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 0.15 |
embC | 4240484 | p.Ala208Ser | missense_variant | 0.12 |
embC | 4240496 | p.Leu212Met | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244184 | p.Ser318Leu | missense_variant | 0.13 |
embA | 4244280 | p.Gly350Cys | missense_variant | 0.2 |
embA | 4244313 | p.Val361Leu | missense_variant | 0.2 |
embA | 4244799 | p.Val523Leu | missense_variant | 0.17 |
embA | 4245523 | c.2294delG | frameshift_variant | 0.12 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.45 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.45 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.56 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.56 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.29 |
embB | 4246567 | c.54_55insT | frameshift_variant | 0.43 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.38 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408445 | c.-243G>A | upstream_gene_variant | 0.2 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |