Run ID: ERR2229364
Sample name:
Date: 31-03-2023 17:05:57
Number of reads: 1167046
Percentage reads mapped: 98.84
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embC | 4240725 | p.Gly288Val | missense_variant | 0.4 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.3 |
ccsA | 620468 | p.Ser193Asn | missense_variant | 0.12 |
ccsA | 620554 | p.Ala222Ser | missense_variant | 0.17 |
rpoB | 760809 | p.Thr335Ala | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776021 | c.2460G>C | synonymous_variant | 0.11 |
mmpL5 | 777164 | c.1317C>T | synonymous_variant | 0.17 |
mmpL5 | 777173 | c.1308C>T | synonymous_variant | 0.17 |
mmpL5 | 777176 | p.Glu435Asp | missense_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302913 | c.-18C>G | upstream_gene_variant | 0.11 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304319 | c.1389C>A | synonymous_variant | 0.12 |
Rv1258c | 1407055 | c.285delG | frameshift_variant | 0.12 |
embR | 1417372 | c.-25C>A | upstream_gene_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474195 | n.538A>G | non_coding_transcript_exon_variant | 0.11 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.4 |
inhA | 1674811 | p.Gly204Ser | missense_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102323 | c.720C>G | synonymous_variant | 0.12 |
ndh | 2103049 | c.-7G>T | upstream_gene_variant | 0.15 |
ndh | 2103157 | c.-115G>T | upstream_gene_variant | 0.25 |
katG | 2154639 | c.1473C>G | synonymous_variant | 0.12 |
katG | 2155002 | c.1110G>C | synonymous_variant | 0.15 |
katG | 2156446 | c.-335C>T | upstream_gene_variant | 0.14 |
PPE35 | 2168053 | p.Val854Met | missense_variant | 0.12 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.16 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.59 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.62 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223325 | c.-161G>T | upstream_gene_variant | 0.12 |
kasA | 2519262 | p.Asp383Gly | missense_variant | 0.12 |
eis | 2714186 | p.Leu383Ile | missense_variant | 0.18 |
eis | 2714957 | p.Tyr126His | missense_variant | 0.22 |
pepQ | 2859753 | c.666C>T | synonymous_variant | 0.13 |
Rv2752c | 3064910 | p.Ser428Gly | missense_variant | 0.17 |
Rv2752c | 3065469 | p.Asn241Lys | missense_variant | 0.22 |
Rv2752c | 3065942 | p.Glu84* | stop_gained | 0.12 |
thyA | 3074312 | p.Ser54Pro | missense_variant | 0.13 |
Rv3236c | 3612412 | c.705G>T | synonymous_variant | 0.25 |
Rv3236c | 3612891 | p.Glu76Lys | missense_variant | 0.13 |
fbiB | 3642477 | p.Asp315Tyr | missense_variant | 0.13 |
rpoA | 3877888 | p.Ala207Val | missense_variant | 0.15 |
clpC1 | 4039031 | c.1674T>C | synonymous_variant | 0.14 |
clpC1 | 4040001 | p.His235Pro | missense_variant | 0.12 |
embC | 4239983 | p.Ala41Ser | missense_variant | 0.12 |
embC | 4240019 | p.Asn53Asp | missense_variant | 0.11 |
embA | 4242382 | c.-851C>A | upstream_gene_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4245767 | c.-747G>A | upstream_gene_variant | 0.13 |
embA | 4246216 | p.Glu995Gly | missense_variant | 0.29 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.62 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.6 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.5 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.5 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.43 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.62 |
embB | 4247059 | c.546C>G | synonymous_variant | 0.13 |
embB | 4247060 | p.Pro183Ala | missense_variant | 0.13 |
embB | 4247066 | p.Ile185Val | missense_variant | 0.13 |
aftB | 4268722 | p.Arg39Cys | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |