TB-Profiler result

Run: ERR2229470
Summary

Run ID: ERR2229470

Sample name:

Date: 31-03-2023 17:13:54

Number of reads: 1206288

Percentage reads mapped: 99.46

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6047 p.Ala270Ser missense_variant 0.12
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoC 765948 p.Leu860* stop_gained 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1303747 p.Thr273Ala missense_variant 1.0
fbiC 1304269 p.Val447Phe missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2167814 c.2799C>T synonymous_variant 0.12
PPE35 2167833 p.Leu927Arg missense_variant 0.11
PPE35 2168728 p.Gly629Arg missense_variant 1.0
PPE35 2170048 p.Leu189Val missense_variant 0.16
PPE35 2170053 p.Thr187Ser missense_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
folC 2746219 c.1380A>T synonymous_variant 0.14
Rv2752c 3066033 p.Asp53Glu missense_variant 0.14
thyX 3067414 p.Ala178Ser missense_variant 0.12
fbiB 3642124 p.Glu197Gly missense_variant 0.13
fbiB 3642217 p.Thr228Ile missense_variant 0.14
ddn 3986984 c.141G>T synonymous_variant 0.12
clpC1 4038231 p.Lys825Thr missense_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242983 p.Arg1041Ser missense_variant 0.13
embB 4245608 c.-906G>A upstream_gene_variant 0.13
embB 4246544 p.Thr11Pro missense_variant 0.28
embB 4246548 p.Pro12Gln missense_variant 0.28
embB 4246555 c.42G>C synonymous_variant 0.36
embB 4246556 p.Ala15Pro missense_variant 0.36
embB 4246563 p.Leu17Trp missense_variant 0.33
embB 4246567 c.54G>T synonymous_variant 0.27
ubiA 4269230 p.Thr202Ala missense_variant 0.12
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0